Wall clock time and date at job start Tue Mar 31 2020 08:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 120.00624 * 2 1 4 4 H 1.48499 * 109.47308 * 240.00481 * 3 2 1 5 5 H 1.48507 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47421 * 119.99681 * 3 2 1 7 7 C 1.39936 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00360 * 175.87173 * 7 2 1 9 9 C 1.41437 * 120.00121 * 355.87524 * 7 2 1 10 10 C 1.40788 * 120.17839 * 214.57190 * 9 7 2 11 11 C 1.37714 * 120.04346 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.40862 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35900 * 359.97347 * 12 11 10 14 14 C 1.47889 * 120.02564 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00026 * 146.38011 * 14 13 12 16 16 N 1.34781 * 119.99539 * 326.65204 * 14 13 12 17 17 C 1.47603 * 118.64594 * 2.96608 * 16 14 13 18 18 C 1.53607 * 112.33621 * 222.04083 * 17 16 14 19 19 C 1.50880 * 109.95604 * 40.83163 * 18 17 16 20 20 C 1.52568 * 109.35946 * 268.02264 * 19 18 17 21 21 C 1.47094 * 114.32396 * 85.01496 * 20 19 18 22 22 C 1.44577 * 118.63910 * 183.23793 * 16 14 13 23 23 H 1.09008 * 109.44706 * 209.29027 * 22 16 14 24 24 C 1.52996 * 109.44986 * 329.23178 * 22 16 14 25 25 O 1.42902 * 109.47383 * 307.13469 * 24 22 16 26 26 C 1.39032 * 119.94870 * 0.27823 * 13 12 11 27 27 H 0.97008 * 119.99852 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98240 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.79535 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.81745 * 179.97438 * 12 11 10 31 31 H 1.09000 * 108.94752 * 342.83762 * 17 16 14 32 32 H 1.08995 * 108.94699 * 101.46734 * 17 16 14 33 33 H 1.09002 * 109.50674 * 280.63302 * 18 17 16 34 34 H 1.09003 * 109.25981 * 160.86856 * 18 17 16 35 35 H 1.09002 * 109.48814 * 148.05923 * 19 18 17 36 36 H 1.09000 * 109.50889 * 28.00134 * 19 18 17 37 37 H 1.08996 * 108.51050 * 323.76148 * 20 19 18 38 38 H 1.08992 * 108.51344 * 206.26495 * 20 19 18 39 39 H 1.08995 * 109.32711 * 176.94268 * 21 20 19 40 40 H 1.08993 * 109.33391 * 57.45670 * 21 20 19 41 41 H 1.08999 * 109.47103 * 67.13718 * 24 22 16 42 42 H 1.09003 * 109.47325 * 187.13793 * 24 22 16 43 43 H 0.96697 * 114.00041 * 179.97438 * 25 24 22 44 44 H 1.08001 * 120.20122 * 179.72642 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0078 -1.2119 0.0005 8 1 3.0858 -1.2133 -0.0668 9 6 1.3034 -2.4352 0.0892 10 6 1.8606 -3.5239 0.7865 11 6 1.1725 -4.7138 0.8707 12 6 -0.0678 -4.8494 0.2723 13 6 -0.6374 -3.7788 -0.4247 14 6 -1.9636 -3.9317 -1.0609 15 8 -2.7229 -2.9843 -1.1185 16 7 -2.3325 -5.1231 -1.5720 17 6 -1.4174 -6.2714 -1.4217 18 6 -1.3244 -7.1152 -2.7018 19 6 -1.2798 -6.2137 -3.9108 20 6 -2.6981 -5.9878 -4.4258 21 6 -3.4205 -4.8974 -3.7529 22 6 -3.6056 -5.2220 -2.2500 23 1 -3.9962 -6.2340 -2.1426 24 6 -4.5905 -4.2276 -1.6321 25 8 -4.6383 -4.4212 -0.2170 26 6 0.0466 -2.5724 -0.5235 27 1 -0.4850 0.8401 0.0004 28 1 2.8287 -3.4261 1.2551 29 1 1.6039 -5.5465 1.4062 30 1 -0.5990 -5.7871 0.3439 31 1 -0.4237 -5.9013 -1.1690 32 1 -1.7745 -6.9046 -0.6096 33 1 -2.1937 -7.7694 -2.7704 34 1 -0.4184 -7.7204 -2.6686 35 1 -0.6797 -6.6815 -4.6913 36 1 -0.8363 -5.2569 -3.6352 37 1 -3.2644 -6.9100 -4.2960 38 1 -2.6478 -5.7637 -5.4913 39 1 -4.3983 -4.7717 -4.2178 40 1 -2.8537 -3.9721 -3.8549 41 1 -4.2640 -3.2105 -1.8488 42 1 -5.5824 -4.3885 -2.0544 43 1 -5.2439 -3.8229 0.2416 44 1 -0.3874 -1.7445 -1.0644 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911955390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:10 Heat of formation + Delta-G solvation = -37.982116 kcal Electronic energy + Delta-G solvation = -26128.779019 eV Core-core repulsion = 22625.749890 eV Total energy + Delta-G solvation = -3503.029129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40165 -37.64189 -36.86073 -35.88767 -34.05101 -33.24644 -32.67378 -30.09231 -29.45752 -27.72853 -26.08744 -25.24774 -23.09762 -22.73002 -20.93118 -20.69602 -20.24809 -18.58586 -17.29103 -16.92224 -16.26951 -15.70703 -15.27540 -15.18675 -14.74580 -14.53042 -14.09191 -13.91760 -13.72232 -13.31234 -13.09945 -12.85671 -12.62226 -12.39986 -12.13658 -12.01764 -11.94195 -11.62311 -11.13931 -11.12334 -10.88030 -10.78231 -10.71602 -10.59990 -10.55829 -10.35635 -10.12988 -10.03308 -9.69183 -9.50797 -9.19830 -8.19082 -8.05054 -7.54614 -7.30815 -6.60067 -4.41646 2.34152 2.85382 3.10087 3.11995 3.16723 3.54012 3.84133 3.98467 4.41674 4.68976 4.75081 4.97558 5.09985 5.12011 5.29486 5.36976 5.53903 5.55135 5.59641 5.71208 5.78043 5.87579 5.92394 6.00299 6.04044 6.12168 6.16994 6.23150 6.25184 6.31607 6.39167 6.42820 6.48891 6.71608 7.04555 7.06082 7.25076 7.29898 7.45638 7.70081 7.82880 7.94431 8.04380 8.11366 8.23574 8.56453 8.88459 8.89114 9.09711 10.30194 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.004804 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.905221 B = 5826.934296 C = 6305.251260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.077 0.923 9 C 0.096 3.904 10 C -0.199 4.199 11 C -0.109 4.109 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.573 3.427 15 O -0.534 6.534 16 N -0.595 5.595 17 C 0.083 3.917 18 C -0.132 4.132 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.130 4.130 22 C 0.158 3.842 23 H 0.073 0.927 24 C 0.054 3.946 25 O -0.564 6.564 26 C -0.088 4.088 27 H 0.281 0.719 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.372 0.628 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -10.142 -6.344 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.219 4.219 11 C -0.127 4.127 12 C -0.237 4.237 13 C -0.130 4.130 14 C 0.365 3.635 15 O -0.413 6.413 16 N -0.328 5.328 17 C -0.039 4.039 18 C -0.170 4.170 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.168 4.168 22 C 0.053 3.947 23 H 0.091 0.909 24 C -0.024 4.024 25 O -0.368 6.368 26 C -0.109 4.109 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.041 0.959 43 H 0.218 0.782 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.758 -9.960 -6.531 13.229 hybrid contribution -0.188 0.966 0.247 1.015 sum -5.947 -8.994 -6.283 12.479 Atomic orbital electron populations 1.69740 1.07117 1.29165 1.36692 1.25908 0.94961 1.01209 0.92668 0.86254 0.79778 0.80233 0.79712 1.19054 1.20378 1.19101 1.19472 0.94623 0.89970 1.45643 0.90500 1.17629 0.91990 0.92227 0.88792 1.21256 1.01069 0.94983 1.04616 1.20500 0.95389 0.96811 1.00000 1.20924 0.97786 0.97796 1.07237 1.19597 0.93789 0.96331 1.03311 1.18821 0.86820 0.81388 0.76439 1.90496 1.52233 1.39969 1.58592 1.47385 1.18028 1.10203 1.57209 1.22906 0.97101 0.87641 0.96274 1.21764 1.01980 0.98040 0.95257 1.21068 0.96543 1.00848 0.97080 1.20404 0.96228 0.98744 0.99632 1.21184 1.00821 0.99934 0.94905 1.20934 0.83930 0.99066 0.90765 0.90898 1.22984 0.95283 1.02555 0.81539 1.86420 1.68728 1.62200 1.19458 1.21794 0.95791 0.94176 0.99104 0.90769 0.88622 0.88843 0.87321 0.85727 0.92636 0.92305 0.90873 0.92171 0.91052 0.92607 0.92520 0.91284 0.91116 0.87861 0.95900 0.78172 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.54 10.62 55.55 0.59 -20.95 16 2 C 0.07 1.76 5.42 -17.35 -0.09 1.67 16 3 Si 0.92 19.11 29.56 -169.99 -5.03 14.08 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.31 9.04 -37.73 -0.34 -12.65 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.10 2.53 5.55 -106.87 -0.59 1.94 16 10 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 11 C -0.11 -2.30 10.01 -39.72 -0.40 -2.70 16 12 C -0.22 -4.60 7.32 -38.92 -0.28 -4.89 16 13 C -0.13 -3.00 5.41 -105.04 -0.57 -3.56 16 14 C 0.57 12.55 6.68 -12.31 -0.08 12.47 16 15 O -0.53 -12.83 12.39 -15.62 -0.19 -13.02 16 16 N -0.60 -10.39 2.05 -166.21 -0.34 -10.73 16 17 C 0.08 1.24 4.42 -3.12 -0.01 1.22 16 18 C -0.13 -1.56 5.71 -27.48 -0.16 -1.72 16 19 C -0.12 -1.45 5.50 -28.02 -0.15 -1.61 16 20 C -0.11 -1.28 5.15 -29.79 -0.15 -1.44 16 21 C -0.13 -1.71 5.06 -28.58 -0.14 -1.85 16 22 C 0.16 2.40 2.34 -67.98 -0.16 2.24 16 23 H 0.07 1.03 8.07 -51.92 -0.42 0.61 16 24 C 0.05 0.87 5.62 37.16 0.21 1.08 16 25 O -0.56 -9.88 12.17 -56.17 -0.68 -10.56 16 26 C -0.09 -2.34 8.22 -38.44 -0.32 -2.65 16 27 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 28 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 2.00 5.03 -52.49 -0.26 1.74 16 31 H 0.13 2.07 4.04 -51.94 -0.21 1.86 16 32 H 0.06 0.79 7.65 -51.93 -0.40 0.40 16 33 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 37 H 0.06 0.57 7.36 -51.93 -0.38 0.19 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.10 1.93 5.43 -53.45 -0.29 1.64 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.37 5.15 9.12 45.56 0.42 5.57 16 44 H 0.14 3.94 6.08 -52.49 -0.32 3.62 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -29.97 337.99 -9.75 -39.72 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.56 Total: 13.91 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -3.63 Total: -17.55 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.25 Total: -31.68 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.88 Total: -23.58 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.97 -9.75 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911955390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.736 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds