Wall clock time and date at job start Tue Mar 31 2020 08:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 120.00624 * 2 1 4 4 H 1.48499 * 109.47308 * 240.00481 * 3 2 1 5 5 H 1.48507 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47421 * 119.99681 * 3 2 1 7 7 C 1.39936 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00360 * 175.87173 * 7 2 1 9 9 C 1.41437 * 120.00121 * 355.87524 * 7 2 1 10 10 C 1.40788 * 120.17839 * 214.57190 * 9 7 2 11 11 C 1.37714 * 120.04346 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.40862 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35900 * 359.97347 * 12 11 10 14 14 C 1.47889 * 120.02564 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00026 * 146.38011 * 14 13 12 16 16 N 1.34781 * 119.99539 * 326.65204 * 14 13 12 17 17 C 1.47603 * 118.64594 * 2.96608 * 16 14 13 18 18 C 1.53607 * 112.33621 * 222.04083 * 17 16 14 19 19 C 1.50880 * 109.95604 * 40.83163 * 18 17 16 20 20 C 1.52568 * 109.35946 * 268.02264 * 19 18 17 21 21 C 1.47094 * 114.32396 * 85.01496 * 20 19 18 22 22 C 1.44577 * 118.63910 * 183.23793 * 16 14 13 23 23 H 1.09008 * 109.44706 * 209.29027 * 22 16 14 24 24 C 1.52996 * 109.44986 * 329.23178 * 22 16 14 25 25 O 1.42902 * 109.47383 * 307.13469 * 24 22 16 26 26 C 1.39032 * 119.94870 * 0.27823 * 13 12 11 27 27 H 0.97008 * 119.99852 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98240 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.79535 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.81745 * 179.97438 * 12 11 10 31 31 H 1.09000 * 108.94752 * 342.83762 * 17 16 14 32 32 H 1.08995 * 108.94699 * 101.46734 * 17 16 14 33 33 H 1.09002 * 109.50674 * 280.63302 * 18 17 16 34 34 H 1.09003 * 109.25981 * 160.86856 * 18 17 16 35 35 H 1.09002 * 109.48814 * 148.05923 * 19 18 17 36 36 H 1.09000 * 109.50889 * 28.00134 * 19 18 17 37 37 H 1.08996 * 108.51050 * 323.76148 * 20 19 18 38 38 H 1.08992 * 108.51344 * 206.26495 * 20 19 18 39 39 H 1.08995 * 109.32711 * 176.94268 * 21 20 19 40 40 H 1.08993 * 109.33391 * 57.45670 * 21 20 19 41 41 H 1.08999 * 109.47103 * 67.13718 * 24 22 16 42 42 H 1.09003 * 109.47325 * 187.13793 * 24 22 16 43 43 H 0.96697 * 114.00041 * 179.97438 * 25 24 22 44 44 H 1.08001 * 120.20122 * 179.72642 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0078 -1.2119 0.0005 8 1 3.0858 -1.2133 -0.0668 9 6 1.3034 -2.4352 0.0892 10 6 1.8606 -3.5239 0.7865 11 6 1.1725 -4.7138 0.8707 12 6 -0.0678 -4.8494 0.2723 13 6 -0.6374 -3.7788 -0.4247 14 6 -1.9636 -3.9317 -1.0609 15 8 -2.7229 -2.9843 -1.1185 16 7 -2.3325 -5.1231 -1.5720 17 6 -1.4174 -6.2714 -1.4217 18 6 -1.3244 -7.1152 -2.7018 19 6 -1.2798 -6.2137 -3.9108 20 6 -2.6981 -5.9878 -4.4258 21 6 -3.4205 -4.8974 -3.7529 22 6 -3.6056 -5.2220 -2.2500 23 1 -3.9962 -6.2340 -2.1426 24 6 -4.5905 -4.2276 -1.6321 25 8 -4.6383 -4.4212 -0.2170 26 6 0.0466 -2.5724 -0.5235 27 1 -0.4850 0.8401 0.0004 28 1 2.8287 -3.4261 1.2551 29 1 1.6039 -5.5465 1.4062 30 1 -0.5990 -5.7871 0.3439 31 1 -0.4237 -5.9013 -1.1690 32 1 -1.7745 -6.9046 -0.6096 33 1 -2.1937 -7.7694 -2.7704 34 1 -0.4184 -7.7204 -2.6686 35 1 -0.6797 -6.6815 -4.6913 36 1 -0.8363 -5.2569 -3.6352 37 1 -3.2644 -6.9100 -4.2960 38 1 -2.6478 -5.7637 -5.4913 39 1 -4.3983 -4.7717 -4.2178 40 1 -2.8537 -3.9721 -3.8549 41 1 -4.2640 -3.2105 -1.8488 42 1 -5.5824 -4.3885 -2.0544 43 1 -5.2439 -3.8229 0.2416 44 1 -0.3874 -1.7445 -1.0644 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911955390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:09 Heat of formation + Delta-G solvation = -55.709946 kcal Electronic energy + Delta-G solvation = -26129.547756 eV Core-core repulsion = 22625.749890 eV Total energy + Delta-G solvation = -3503.797866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.84140 -39.30144 -38.28430 -37.28079 -35.72413 -34.75472 -33.86338 -31.81961 -31.29720 -29.02049 -27.56121 -26.83945 -24.61791 -24.05969 -22.63590 -22.17564 -21.33504 -20.22265 -18.99410 -18.23689 -17.74980 -17.22064 -16.95928 -16.47740 -16.40530 -15.79682 -15.61849 -15.28971 -14.96669 -14.64717 -14.62946 -14.49059 -14.23335 -13.82773 -13.60898 -13.38929 -13.22911 -13.16793 -12.82897 -12.66218 -12.50056 -12.23182 -12.16439 -11.84704 -11.78453 -11.60722 -11.53340 -11.43902 -11.20008 -11.06729 -11.01750 -9.74329 -9.50155 -9.32915 -9.17795 -8.49322 -6.41446 0.52108 1.03277 1.36597 1.47543 1.50161 2.09700 2.18921 2.22858 2.81645 3.26062 3.63197 3.70938 3.82040 4.02936 4.08102 4.14455 4.24698 4.29293 4.44455 4.46957 4.56980 4.62310 4.69499 4.75110 4.85572 4.88295 4.97785 5.01315 5.03711 5.13411 5.21714 5.24690 5.27823 5.30308 5.35957 5.38397 5.49164 5.57083 5.86376 5.92384 5.98873 6.10037 6.31901 6.48698 6.67190 6.87046 6.93412 6.98131 7.47858 8.41849 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.004804 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.905221 B = 5826.934296 C = 6305.251260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.022 3.978 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.081 0.919 9 C 0.062 3.938 10 C -0.205 4.205 11 C -0.105 4.105 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.563 3.437 15 O -0.569 6.569 16 N -0.583 5.583 17 C 0.074 3.926 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.122 4.122 22 C 0.150 3.850 23 H 0.100 0.900 24 C 0.054 3.946 25 O -0.584 6.584 26 C -0.121 4.121 27 H 0.281 0.719 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.384 0.616 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -13.411 -6.702 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.099 0.901 9 C 0.060 3.940 10 C -0.225 4.225 11 C -0.123 4.123 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.354 3.646 15 O -0.450 6.450 16 N -0.314 5.314 17 C -0.047 4.047 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.161 4.161 22 C 0.046 3.954 23 H 0.118 0.882 24 C -0.024 4.024 25 O -0.390 6.390 26 C -0.141 4.141 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.232 0.768 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.964 -13.285 -6.901 16.114 hybrid contribution -0.200 1.778 0.345 1.822 sum -6.163 -11.507 -6.556 14.608 Atomic orbital electron populations 1.69907 1.08858 1.29827 1.38514 1.26849 0.95642 1.04763 0.91716 0.85153 0.78364 0.75423 0.80121 1.18162 1.19961 1.18154 1.19769 0.94937 0.90988 1.47533 0.90135 1.17979 0.92525 0.93514 0.89980 1.21525 1.01730 0.95143 1.04067 1.20961 0.94987 0.97125 0.99213 1.21369 0.97661 0.98053 1.04574 1.19933 0.94713 0.96090 1.03471 1.18744 0.86137 0.82617 0.77085 1.90519 1.52911 1.41520 1.60092 1.47394 1.19009 1.09261 1.55763 1.23038 0.95473 0.87116 0.99079 1.21744 1.04107 0.97516 0.92739 1.21093 0.97330 0.99199 0.98158 1.20412 0.95588 0.98973 0.99992 1.21159 1.01930 0.99052 0.93968 1.21260 0.82519 1.00076 0.91506 0.88241 1.22937 0.97221 1.01018 0.81206 1.86358 1.69566 1.62719 1.20372 1.21544 0.96958 0.94716 1.00926 0.90879 0.87271 0.84336 0.83845 0.87722 0.90887 0.89958 0.88841 0.90265 0.95013 0.90013 0.91294 0.88834 0.94811 0.91417 0.92447 0.76826 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.66 10.62 21.82 0.23 -48.43 16 2 C 0.02 1.18 5.42 85.25 0.46 1.64 16 3 Si 0.99 40.74 29.56 68.60 2.03 42.77 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.50 -27.85 9.04 23.47 0.21 -27.64 16 8 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 9 C 0.06 3.43 5.55 -21.32 -0.12 3.31 16 10 C -0.21 -9.71 9.78 22.77 0.22 -9.49 16 11 C -0.10 -4.23 10.01 22.18 0.22 -4.01 16 12 C -0.20 -8.09 7.32 22.70 0.17 -7.93 16 13 C -0.14 -6.77 5.41 -20.13 -0.11 -6.88 16 14 C 0.56 25.50 6.68 86.80 0.58 26.08 16 15 O -0.57 -29.09 12.39 16.16 0.20 -28.89 16 16 N -0.58 -19.84 2.05 -798.04 -1.64 -21.48 16 17 C 0.07 2.01 4.42 86.37 0.38 2.39 16 18 C -0.12 -2.42 5.71 30.11 0.17 -2.25 16 19 C -0.12 -2.68 5.50 29.76 0.16 -2.51 16 20 C -0.11 -2.21 5.15 28.61 0.15 -2.07 16 21 C -0.12 -3.05 5.06 29.40 0.15 -2.90 16 22 C 0.15 4.30 2.34 45.99 0.11 4.40 16 23 H 0.10 2.38 8.07 -2.38 -0.02 2.36 16 24 C 0.05 1.70 5.62 71.98 0.40 2.10 16 25 O -0.58 -20.18 12.17 -128.96 -1.57 -21.75 16 26 C -0.12 -6.82 8.22 23.01 0.19 -6.64 16 27 H 0.28 15.08 8.30 -92.70 -0.77 14.32 16 28 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 29 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.14 4.84 5.03 -2.91 -0.01 4.83 16 31 H 0.11 3.27 4.04 -2.40 -0.01 3.26 16 32 H 0.07 1.78 7.65 -2.39 -0.02 1.76 16 33 H 0.08 1.30 7.32 -2.39 -0.02 1.28 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.03 0.96 7.48 -2.39 -0.02 0.94 16 37 H 0.08 1.25 7.36 -2.39 -0.02 1.23 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 2.66 5.43 -26.52 -0.14 2.52 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.38 10.70 9.12 -74.06 -0.68 10.02 16 44 H 0.10 6.38 6.08 -2.91 -0.02 6.36 16 Total: -1.00 -71.57 337.99 2.82 -68.75 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: 0.21 Total: 41.42 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 3.35 Total: -32.38 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.41 Total: -69.91 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -1.37 Total: -50.64 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -71.57 2.82 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911955390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.038 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds