Wall clock time and date at job start Tue Mar 31 2020 08:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46839 * 299.99891 * 3 2 1 6 6 H 1.48497 * 109.47275 * 59.99920 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47565 * 300.00172 * 9 7 2 11 11 O 1.42904 * 109.47211 * 59.99733 * 9 7 2 12 12 C 1.53000 * 109.47835 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47597 * 179.97438 * 12 9 7 14 14 C 1.46847 * 110.99982 * 189.99795 * 13 12 9 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 12 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.50695 * 109.52378 * 177.57008 * 16 15 14 18 18 O 1.21253 * 120.00177 * 270.33035 * 17 16 15 19 19 C 1.47174 * 120.00037 * 90.33088 * 17 16 15 20 20 C 1.39850 * 120.16976 * 359.72519 * 19 17 16 21 21 C 1.37891 * 119.82562 * 179.69806 * 20 19 17 22 22 C 1.38405 * 120.16947 * 0.57720 * 21 20 19 23 23 C 1.38402 * 120.34822 * 359.72080 * 22 21 20 24 24 C 1.37888 * 120.17420 * 359.97438 * 23 22 21 25 25 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 26 26 C 1.46843 * 110.99970 * 314.21160 * 13 12 9 27 27 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99859 * 60.00295 * 11 9 7 29 29 H 1.08997 * 109.46731 * 59.99532 * 12 9 7 30 30 H 1.09001 * 109.46741 * 300.00746 * 12 9 7 31 31 H 1.09002 * 109.46481 * 305.85957 * 14 13 12 32 32 H 1.08994 * 109.46283 * 65.83811 * 14 13 12 33 33 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 34 34 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 35 35 H 1.09002 * 109.58642 * 297.73897 * 16 15 14 36 36 H 1.08008 * 120.08738 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.91416 * 180.31923 * 21 20 19 38 38 H 1.07991 * 119.82655 * 179.69718 * 22 21 20 39 39 H 1.07996 * 119.91540 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.08854 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.49981 * 182.39822 * 25 16 15 42 42 H 1.08998 * 109.53089 * 62.30397 * 25 16 15 43 43 H 1.08993 * 109.46313 * 294.17341 * 26 13 12 44 44 H 1.09000 * 109.46480 * 54.15451 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0015 13 7 1.5108 -4.9342 0.0032 14 6 2.4172 -6.0649 0.2410 15 6 1.6461 -7.3783 0.0917 16 6 0.4925 -7.4046 1.0982 17 6 -0.3065 -8.6692 0.9156 18 8 -1.2411 -8.6897 0.1434 19 6 0.0476 -9.8794 1.6745 20 6 1.1285 -9.8615 2.5618 21 6 1.4501 -10.9977 3.2739 22 6 0.7138 -12.1572 3.1034 23 6 -0.3533 -12.1847 2.2225 24 6 -0.6914 -11.0550 1.5079 25 6 -0.4096 -6.1905 0.8601 26 6 0.4209 -4.9113 0.9870 27 1 -0.4850 0.8401 0.0004 28 1 0.9208 -2.5308 -1.9961 29 1 2.8726 -3.6039 0.8909 30 1 2.8713 -3.6047 -0.8890 31 1 3.2308 -6.0369 -0.4838 32 1 2.8263 -5.9965 1.2490 33 1 1.2482 -7.4538 -0.9202 34 1 2.3154 -8.2170 0.2836 35 1 0.8913 -7.3689 2.1121 36 1 1.7069 -8.9588 2.6923 37 1 2.2813 -10.9839 3.9633 38 1 0.9737 -13.0452 3.6603 39 1 -0.9233 -13.0931 2.0952 40 1 -1.5247 -11.0779 0.8212 41 1 -1.2091 -6.1803 1.6010 42 1 -0.8405 -6.2471 -0.1395 43 1 0.8395 -4.8482 1.9914 44 1 -0.2156 -4.0456 0.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929161791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:00 Heat of formation + Delta-G solvation = -61.778425 kcal Electronic energy + Delta-G solvation = -24493.679150 eV Core-core repulsion = 20989.618135 eV Total energy + Delta-G solvation = -3504.061015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50615 -38.82532 -37.94280 -35.59170 -33.13910 -32.06456 -31.51537 -31.25416 -30.59945 -28.30006 -25.99472 -24.25749 -23.32698 -22.98727 -22.36963 -20.65777 -19.74302 -19.15863 -17.58461 -17.10196 -16.08142 -15.85106 -15.15043 -14.87960 -14.75183 -14.60234 -14.55475 -14.32450 -14.06239 -13.84087 -13.74839 -13.39960 -13.04901 -12.85800 -12.57602 -12.40009 -12.02571 -11.83225 -11.48540 -11.24521 -11.08750 -10.93401 -10.91167 -10.80005 -10.68352 -10.46585 -10.17745 -10.05374 -9.49982 -9.33262 -9.27644 -8.87099 -8.53976 -8.04114 -7.66080 -6.00229 -4.18197 0.41701 1.03921 2.26254 3.26780 3.35192 3.38156 3.51970 3.81948 4.33196 4.47022 4.51666 4.59783 4.68342 4.80730 4.89726 4.97958 5.08101 5.14732 5.27596 5.39688 5.44430 5.54576 5.60071 5.64967 5.76036 5.79470 5.86778 5.99395 6.00415 6.02533 6.09332 6.13707 6.21279 6.26474 6.31071 6.48333 6.54827 6.60096 6.66764 6.85678 7.44792 7.60512 7.69412 7.79782 7.86455 8.21088 8.85466 9.46465 9.62400 11.03940 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.002680 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.941685 B =10446.417505 C =10742.187880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.055 0.945 9 C 0.229 3.771 10 H 0.058 0.942 11 O -0.555 6.555 12 C 0.031 3.969 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.099 4.099 16 C -0.131 4.131 17 C 0.401 3.599 18 O -0.445 6.445 19 C -0.165 4.165 20 C -0.072 4.072 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.064 4.064 25 C -0.102 4.102 26 C 0.054 3.946 27 H 0.260 0.740 28 H 0.345 0.655 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -23.022 6.323 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.171 3.829 10 H 0.076 0.924 11 O -0.357 6.357 12 C -0.097 4.097 13 N -0.253 5.253 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.150 4.150 17 C 0.278 3.722 18 O -0.319 6.319 19 C -0.166 4.166 20 C -0.091 4.091 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.152 4.152 24 C -0.083 4.083 25 C -0.140 4.140 26 C -0.074 4.074 27 H 0.070 0.930 28 H 0.189 0.811 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.041 0.959 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.830 -23.025 5.911 23.842 hybrid contribution 1.516 1.021 0.646 1.939 sum 3.346 -22.004 6.557 23.202 Atomic orbital electron populations 1.70087 1.05891 1.26305 1.47134 1.25025 0.94689 0.99089 0.93883 0.86624 0.80187 0.83917 0.77683 1.19769 1.20857 1.20940 1.21684 0.93183 0.91595 1.54705 0.92685 1.19451 0.87859 0.88895 0.86693 0.92447 1.86542 1.37806 1.96294 1.15096 1.23047 0.97537 0.89567 0.99516 1.61932 1.11105 1.02902 1.49365 1.22040 0.95063 0.90888 0.99226 1.21488 0.95387 0.97511 0.99344 1.21742 0.97727 0.94059 1.01474 1.22594 0.82549 0.88452 0.78634 1.90511 1.25581 1.85537 1.30307 1.20672 0.98822 0.95972 1.01107 1.21572 0.95022 0.98769 0.93690 1.21178 1.00567 0.93051 1.00380 1.21425 0.94643 0.98104 0.96925 1.21166 0.98129 0.98505 0.97435 1.21477 0.98062 0.91623 0.97096 1.21527 0.96787 0.92143 1.03497 1.22182 0.94134 0.98575 0.92504 0.93043 0.81148 0.95627 0.91707 0.90868 0.95484 0.90470 0.91637 0.89222 0.84824 0.85373 0.85669 0.85473 0.84926 0.91860 0.89873 0.95888 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 12.84 55.43 0.71 -24.60 16 2 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.57 -15.61 8.76 -34.45 -0.30 -15.91 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.23 5.71 2.12 -27.89 -0.06 5.65 16 10 H 0.06 1.56 6.21 -51.93 -0.32 1.24 16 11 O -0.56 -14.36 12.40 -35.23 -0.44 -14.80 16 12 C 0.03 0.63 4.87 -3.83 -0.02 0.61 16 13 N -0.53 -9.51 4.67 -234.68 -1.10 -10.60 16 14 C 0.06 0.80 5.42 -3.84 -0.02 0.78 16 15 C -0.10 -1.23 5.36 -26.65 -0.14 -1.38 16 16 C -0.13 -1.65 2.03 -91.65 -0.19 -1.84 16 17 C 0.40 5.21 6.18 -30.68 -0.19 5.02 16 18 O -0.45 -7.12 16.13 5.58 0.09 -7.03 16 19 C -0.16 -1.79 5.87 -105.06 -0.62 -2.41 16 20 C -0.07 -0.64 9.36 -39.11 -0.37 -1.00 16 21 C -0.13 -0.99 10.03 -39.65 -0.40 -1.38 16 22 C -0.09 -0.65 10.04 -39.46 -0.40 -1.05 16 23 C -0.13 -1.05 10.03 -39.65 -0.40 -1.45 16 24 C -0.06 -0.65 9.60 -39.11 -0.38 -1.02 16 25 C -0.10 -1.57 5.02 -26.64 -0.13 -1.70 16 26 C 0.05 0.96 4.85 -3.83 -0.02 0.94 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.35 8.11 9.04 45.56 0.41 8.53 16 29 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.97 6.48 -51.93 -0.34 0.64 16 36 H 0.13 1.00 6.36 -52.48 -0.33 0.67 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 1.33 7.65 -52.49 -0.40 0.93 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.45 7.78 -51.93 -0.40 1.05 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 2.14 5.66 -51.93 -0.29 1.85 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -31.79 356.28 -9.97 -41.76 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.87 Total: 7.86 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.72 Total: -14.04 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.38 Total: -35.20 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.35 Total: -21.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.79 -9.97 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929161791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.017 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds