Wall clock time and date at job start Tue Mar 31 2020 08:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46839 * 299.99891 * 3 2 1 6 6 H 1.48497 * 109.47275 * 59.99920 * 3 2 1 7 7 C 1.37875 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50689 * 120.00459 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47565 * 300.00172 * 9 7 2 11 11 O 1.42904 * 109.47211 * 59.99733 * 9 7 2 12 12 C 1.53000 * 109.47835 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47597 * 179.97438 * 12 9 7 14 14 C 1.46847 * 110.99982 * 189.99795 * 13 12 9 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 12 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.50695 * 109.52378 * 177.57008 * 16 15 14 18 18 O 1.21253 * 120.00177 * 270.33035 * 17 16 15 19 19 C 1.47174 * 120.00037 * 90.33088 * 17 16 15 20 20 C 1.39850 * 120.16976 * 359.72519 * 19 17 16 21 21 C 1.37891 * 119.82562 * 179.69806 * 20 19 17 22 22 C 1.38405 * 120.16947 * 0.57720 * 21 20 19 23 23 C 1.38402 * 120.34822 * 359.72080 * 22 21 20 24 24 C 1.37888 * 120.17420 * 359.97438 * 23 22 21 25 25 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 26 26 C 1.46843 * 110.99970 * 314.21160 * 13 12 9 27 27 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99859 * 60.00295 * 11 9 7 29 29 H 1.08997 * 109.46731 * 59.99532 * 12 9 7 30 30 H 1.09001 * 109.46741 * 300.00746 * 12 9 7 31 31 H 1.09002 * 109.46481 * 305.85957 * 14 13 12 32 32 H 1.08994 * 109.46283 * 65.83811 * 14 13 12 33 33 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 34 34 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 35 35 H 1.09002 * 109.58642 * 297.73897 * 16 15 14 36 36 H 1.08008 * 120.08738 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.91416 * 180.31923 * 21 20 19 38 38 H 1.07991 * 119.82655 * 179.69718 * 22 21 20 39 39 H 1.07996 * 119.91540 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.08854 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.49981 * 182.39822 * 25 16 15 42 42 H 1.08998 * 109.53089 * 62.30397 * 25 16 15 43 43 H 1.08993 * 109.46313 * 294.17341 * 26 13 12 44 44 H 1.09000 * 109.46480 * 54.15451 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0015 13 7 1.5108 -4.9342 0.0032 14 6 2.4172 -6.0649 0.2410 15 6 1.6461 -7.3783 0.0917 16 6 0.4925 -7.4046 1.0982 17 6 -0.3065 -8.6692 0.9156 18 8 -1.2411 -8.6897 0.1434 19 6 0.0476 -9.8794 1.6745 20 6 1.1285 -9.8615 2.5618 21 6 1.4501 -10.9977 3.2739 22 6 0.7138 -12.1572 3.1034 23 6 -0.3533 -12.1847 2.2225 24 6 -0.6914 -11.0550 1.5079 25 6 -0.4096 -6.1905 0.8601 26 6 0.4209 -4.9113 0.9870 27 1 -0.4850 0.8401 0.0004 28 1 0.9208 -2.5308 -1.9961 29 1 2.8726 -3.6039 0.8909 30 1 2.8713 -3.6047 -0.8890 31 1 3.2308 -6.0369 -0.4838 32 1 2.8263 -5.9965 1.2490 33 1 1.2482 -7.4538 -0.9202 34 1 2.3154 -8.2170 0.2836 35 1 0.8913 -7.3689 2.1121 36 1 1.7069 -8.9588 2.6923 37 1 2.2813 -10.9839 3.9633 38 1 0.9737 -13.0452 3.6603 39 1 -0.9233 -13.0931 2.0952 40 1 -1.5247 -11.0779 0.8212 41 1 -1.2091 -6.1803 1.6010 42 1 -0.8405 -6.2471 -0.1395 43 1 0.8395 -4.8482 1.9914 44 1 -0.2156 -4.0456 0.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929161791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:59 Heat of formation + Delta-G solvation = -83.176106 kcal Electronic energy + Delta-G solvation = -24494.607023 eV Core-core repulsion = 20989.618135 eV Total energy + Delta-G solvation = -3504.988888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48079 -39.87457 -39.02803 -37.37985 -34.53506 -34.17102 -32.34715 -31.87625 -31.82403 -30.04169 -27.48738 -25.63695 -24.65089 -23.90874 -23.24734 -22.08223 -21.03650 -20.26248 -19.12308 -18.35183 -17.14471 -16.67588 -16.64295 -16.44784 -16.23860 -16.01979 -15.64823 -15.50548 -15.37816 -15.04739 -14.84552 -14.54557 -14.38449 -13.98524 -13.95108 -13.45602 -13.20867 -13.01028 -12.93068 -12.70758 -12.65793 -12.58465 -12.21086 -12.17548 -12.04332 -11.93514 -11.61074 -11.53941 -10.88706 -10.66495 -10.49957 -10.04217 -9.94122 -9.93541 -9.08655 -8.12696 -6.38270 -0.32983 0.43655 1.39750 1.41057 1.41238 1.53200 2.38848 2.86188 2.88440 3.07469 3.14283 3.66002 3.79695 3.84708 4.02380 4.11809 4.18197 4.19978 4.32513 4.33620 4.36849 4.47592 4.51343 4.53702 4.58404 4.61286 4.73420 4.75937 4.88043 4.90635 4.98838 5.03061 5.08364 5.14630 5.18429 5.32712 5.40173 5.48903 5.51647 5.62255 5.78091 5.96951 6.02523 6.24154 6.37620 6.49570 6.75501 7.35701 7.61561 8.91886 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.002680 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.941685 B =10446.417505 C =10742.187880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.586 4.586 8 H 0.060 0.940 9 C 0.228 3.772 10 H 0.027 0.973 11 O -0.572 6.572 12 C 0.048 3.952 13 N -0.542 5.542 14 C 0.055 3.945 15 C -0.091 4.091 16 C -0.125 4.125 17 C 0.406 3.594 18 O -0.490 6.490 19 C -0.189 4.189 20 C -0.073 4.073 21 C -0.134 4.134 22 C -0.086 4.086 23 C -0.138 4.138 24 C -0.083 4.083 25 C -0.095 4.095 26 C 0.062 3.938 27 H 0.260 0.740 28 H 0.353 0.647 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -24.951 7.943 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.624 4.624 8 H 0.078 0.922 9 C 0.171 3.829 10 H 0.045 0.955 11 O -0.375 6.375 12 C -0.080 4.080 13 N -0.267 5.267 14 C -0.072 4.072 15 C -0.129 4.129 16 C -0.144 4.144 17 C 0.286 3.714 18 O -0.367 6.367 19 C -0.189 4.189 20 C -0.091 4.091 21 C -0.152 4.152 22 C -0.103 4.103 23 C -0.155 4.155 24 C -0.101 4.101 25 C -0.133 4.133 26 C -0.066 4.066 27 H 0.069 0.931 28 H 0.197 0.803 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.611 -24.973 7.538 26.490 hybrid contribution 0.647 1.515 0.184 1.658 sum 5.258 -23.458 7.723 25.250 Atomic orbital electron populations 1.70235 1.07695 1.27224 1.48612 1.25911 0.95467 1.02961 0.93477 0.85497 0.79192 0.79171 0.77613 1.18577 1.20653 1.20545 1.22090 0.93571 0.92769 1.53959 0.92174 1.19340 0.87916 0.90382 0.85304 0.95511 1.86502 1.38773 1.96455 1.15811 1.22667 0.96169 0.89228 0.99889 1.61873 1.11820 1.03056 1.49961 1.22164 0.94757 0.89745 1.00556 1.21448 0.95539 0.97806 0.98135 1.21725 0.97164 0.92457 1.03071 1.22842 0.81507 0.89283 0.77792 1.90500 1.27569 1.86216 1.32451 1.20539 1.00671 0.95136 1.02603 1.21775 0.94207 1.00089 0.93033 1.21564 1.01089 0.92419 1.00094 1.21857 0.93423 0.99166 0.95887 1.21440 0.98672 0.98390 0.97041 1.21549 0.98170 0.92562 0.97847 1.21388 0.97194 0.92727 1.02015 1.21986 0.93830 0.97912 0.92904 0.93080 0.80280 0.95191 0.91191 0.89733 0.93743 0.92485 0.88059 0.86468 0.83343 0.82548 0.82609 0.83462 0.86281 0.91461 0.92711 0.94895 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.52 12.84 21.45 0.28 -54.25 16 2 C 0.02 1.35 5.40 84.65 0.46 1.81 16 3 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.59 -32.18 8.76 25.60 0.22 -31.96 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.23 11.73 2.12 29.84 0.06 11.79 16 10 H 0.03 1.55 6.21 -2.39 -0.01 1.53 16 11 O -0.57 -30.81 12.40 -148.98 -1.85 -32.66 16 12 C 0.05 1.97 4.87 86.30 0.42 2.39 16 13 N -0.54 -19.48 4.67 -896.40 -4.19 -23.67 16 14 C 0.06 1.46 5.42 86.32 0.47 1.92 16 15 C -0.09 -2.11 5.36 30.65 0.16 -1.94 16 16 C -0.13 -3.04 2.03 -11.46 -0.02 -3.06 16 17 C 0.41 10.54 6.18 28.03 0.17 10.71 16 18 O -0.49 -16.50 16.13 -2.94 -0.05 -16.55 16 19 C -0.19 -3.87 5.87 -20.15 -0.12 -3.99 16 20 C -0.07 -1.06 9.36 22.58 0.21 -0.85 16 21 C -0.13 -1.42 10.03 22.23 0.22 -1.20 16 22 C -0.09 -0.86 10.04 22.35 0.22 -0.64 16 23 C -0.14 -1.84 10.03 22.23 0.22 -1.62 16 24 C -0.08 -1.62 9.60 22.58 0.22 -1.40 16 25 C -0.10 -3.05 5.02 30.65 0.15 -2.89 16 26 C 0.06 2.26 4.85 86.33 0.42 2.68 16 27 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.35 17.17 9.04 -74.05 -0.67 16.50 16 29 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.12 2.22 6.48 -2.39 -0.02 2.20 16 36 H 0.15 1.62 6.36 -2.91 -0.02 1.60 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.16 0.62 8.06 -2.92 -0.02 0.60 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.12 2.53 7.65 -2.91 -0.02 2.51 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 2.05 7.78 -2.39 -0.02 2.03 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 2.58 5.66 -2.39 -0.01 2.57 16 Total: -1.00 -71.87 356.28 0.05 -71.82 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.33 Total: 28.00 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.50 Total: -18.25 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.91 Total: -77.92 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -1.89 Total: -49.21 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.87 0.05 -71.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929161791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.357 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds