Wall clock time and date at job start Tue Mar 31 2020 08:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48501 * 109.47415 * 274.66389 * 3 2 1 5 5 H 1.48498 * 109.47260 * 34.66441 * 3 2 1 6 6 H 1.48506 * 109.46893 * 154.66293 * 3 2 1 7 7 C 1.39940 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00137 * 162.23097 * 7 2 1 9 9 C 1.41397 * 120.00174 * 342.23325 * 7 2 1 10 10 C 1.40708 * 120.24724 * 155.28926 * 9 7 2 11 11 C 1.37628 * 119.74833 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24366 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.74880 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.46973 * 89.99851 * 13 12 11 15 15 C 1.47443 * 110.99693 * 69.87709 * 14 13 12 16 16 C 1.54320 * 107.37079 * 236.65970 * 15 14 13 17 17 C 1.55397 * 102.89967 * 337.89643 * 16 15 14 18 18 C 1.47844 * 111.00421 * 309.03781 * 14 13 12 19 19 H 1.09006 * 110.37448 * 27.41677 * 18 14 13 20 20 C 1.53001 * 110.36989 * 265.19150 * 18 14 13 21 21 O 1.43752 * 109.63233 * 299.35836 * 20 18 14 22 22 C 1.44780 * 104.81543 * 215.80973 * 21 20 18 23 23 C 1.54908 * 101.72332 * 36.10752 * 22 21 20 24 24 O 1.43371 * 109.62971 * 179.97438 * 20 18 14 25 25 C 1.38630 * 120.50122 * 0.29770 * 12 11 10 26 26 C 1.37620 * 120.24809 * 359.44723 * 25 12 11 27 27 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.13026 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.87587 * 179.97438 * 11 10 9 30 30 H 1.09005 * 109.47057 * 330.00717 * 13 12 11 31 31 H 1.08993 * 109.47205 * 210.00232 * 13 12 11 32 32 H 1.08998 * 109.89056 * 356.14758 * 15 14 13 33 33 H 1.08994 * 109.89339 * 117.17296 * 15 14 13 34 34 H 1.09000 * 110.70400 * 96.18048 * 16 15 14 35 35 H 1.09001 * 110.70542 * 219.41368 * 16 15 14 36 36 H 1.09000 * 110.87064 * 277.39203 * 17 16 15 37 37 H 1.08998 * 111.05823 * 153.65224 * 17 16 15 38 38 H 1.08997 * 109.63128 * 59.60685 * 20 18 14 39 39 H 1.09004 * 110.98233 * 277.99195 * 22 21 20 40 40 H 1.09010 * 110.97625 * 154.21612 * 22 21 20 41 41 H 1.08999 * 110.69405 * 206.04339 * 23 22 21 42 42 H 1.08997 * 110.70102 * 82.83608 * 23 22 21 43 43 H 1.07997 * 119.87399 * 179.70183 * 25 12 11 44 44 H 1.08004 * 120.12567 * 180.27657 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1034 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5857 1.4136 0.5992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2860 9 6 1.3515 -2.4074 0.3726 10 6 1.8217 -3.6492 -0.0931 11 6 1.1746 -4.8064 0.2761 12 6 0.0638 -4.7517 1.1039 13 6 -0.6358 -6.0258 1.5017 14 7 -0.0412 -6.5447 2.7406 15 6 -0.3761 -5.6826 3.8889 16 6 0.9534 -5.2331 4.5308 17 6 1.9546 -6.3212 4.0529 18 6 1.4306 -6.6277 2.6278 19 1 1.7993 -5.8865 1.9186 20 6 1.8533 -8.0332 2.1957 21 8 1.4181 -8.9910 3.1754 22 6 2.4695 -9.9856 3.2132 23 6 3.7339 -9.1151 3.0056 24 8 3.2818 -8.0957 2.0908 25 6 -0.4115 -3.5335 1.5641 26 6 0.2230 -2.3641 1.2120 27 1 -0.4849 0.8401 0.0004 28 1 2.6865 -3.6941 -0.7384 29 1 1.5334 -5.7606 -0.0804 30 1 -0.5242 -6.7646 0.7080 31 1 -1.6945 -5.8236 1.6636 32 1 -0.9362 -4.8119 3.5479 33 1 -0.9669 -6.2428 4.6135 34 1 1.2471 -4.2507 4.1611 35 1 0.8745 -5.2292 5.6179 36 1 1.8994 -7.2055 4.6878 37 1 2.9715 -5.9301 4.0194 38 1 1.4049 -8.2701 1.2309 39 1 2.3545 -10.7062 2.4034 40 1 2.4964 -10.4886 4.1800 41 1 4.5372 -9.7025 2.5609 42 1 4.0556 -8.6720 3.9480 43 1 -1.2804 -3.5023 2.2046 44 1 -0.1464 -1.4164 1.5752 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933902941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:50 Heat of formation + Delta-G solvation = -60.519849 kcal Electronic energy + Delta-G solvation = -25741.090351 eV Core-core repulsion = 22237.083912 eV Total energy + Delta-G solvation = -3504.006439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49848 -38.88097 -36.91985 -34.85518 -33.88529 -31.98963 -30.99757 -29.52817 -29.29111 -28.17434 -26.20851 -24.26328 -23.40845 -23.03432 -21.36361 -20.44193 -20.31634 -19.25621 -17.34810 -17.13866 -16.56569 -16.23232 -15.38073 -15.27759 -15.04739 -14.35874 -14.20040 -13.85536 -13.68061 -13.54231 -13.17334 -12.85292 -12.68676 -12.55135 -12.37308 -11.99758 -11.70023 -11.59703 -11.46462 -11.15985 -11.09115 -10.91097 -10.84470 -10.71102 -10.57186 -10.36844 -10.25064 -10.08452 -9.78375 -9.44093 -9.37326 -9.14372 -7.80907 -7.45179 -7.31971 -6.79299 -4.38395 2.71231 3.00585 3.04890 3.08252 3.15913 3.46467 3.90338 4.01557 4.49339 4.55317 4.70975 4.80787 4.92960 5.04058 5.09783 5.34933 5.41443 5.47217 5.54998 5.63772 5.65833 5.82526 5.88508 5.90927 6.00641 6.07031 6.20283 6.26843 6.27025 6.31201 6.37686 6.42599 6.55269 6.68257 6.91644 7.03310 7.12895 7.21441 7.31062 7.46365 7.57498 7.60623 7.82661 8.01799 8.07536 8.26444 8.60461 8.86206 8.93789 10.14665 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.003866 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.729426 B = 7240.864231 C = 7601.250427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.225 4.225 11 C -0.080 4.080 12 C -0.248 4.248 13 C 0.105 3.895 14 N -0.511 5.511 15 C 0.047 3.953 16 C -0.137 4.137 17 C -0.114 4.114 18 C 0.045 3.955 19 H 0.106 0.894 20 C 0.251 3.749 21 O -0.356 6.356 22 C 0.011 3.989 23 C 0.021 3.979 24 O -0.382 6.382 25 C -0.088 4.088 26 C -0.165 4.165 27 H 0.280 0.720 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -13.029 7.192 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.099 4.099 12 C -0.250 4.250 13 C -0.022 4.022 14 N -0.234 5.234 15 C -0.081 4.081 16 C -0.176 4.176 17 C -0.152 4.152 18 C -0.063 4.063 19 H 0.124 0.876 20 C 0.155 3.845 21 O -0.276 6.276 22 C -0.066 4.066 23 C -0.056 4.056 24 O -0.302 6.302 25 C -0.107 4.107 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.485 -13.244 7.242 15.298 hybrid contribution 0.683 1.507 -0.305 1.683 sum 3.168 -11.737 6.937 13.997 Atomic orbital electron populations 1.69829 1.07593 1.29205 1.35080 1.25904 0.94702 1.01303 0.92201 0.86340 0.80810 0.80756 0.79089 1.19547 1.20016 1.18412 1.19607 0.98109 0.91320 1.40183 0.90490 1.17609 0.90995 0.91958 0.88328 1.20976 1.03865 0.92924 1.06742 1.20353 0.95740 0.96265 0.97549 1.19619 1.01988 0.94312 1.09119 1.21031 0.97275 0.93059 0.90855 1.63705 1.07992 1.47874 1.03861 1.22708 0.97017 0.95640 0.92717 1.22754 0.95603 0.99325 0.99893 1.22579 0.98481 0.98584 0.95577 1.23222 0.89346 0.94801 0.98966 0.87624 1.23914 0.78796 0.89963 0.91813 1.89364 1.41898 1.35145 1.61192 1.24351 0.86147 0.92844 1.03295 1.24150 0.97575 0.89229 0.94604 1.88922 1.21118 1.58305 1.61886 1.20528 0.98222 0.92705 0.99286 1.21296 0.99399 0.96683 1.01077 0.90881 0.89102 0.89629 0.91874 0.91541 0.91879 0.91632 0.91002 0.91674 0.91078 0.91514 0.90329 0.91100 0.87858 0.88665 0.90891 0.89689 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 10.97 55.55 0.61 -19.76 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 11 C -0.08 -1.77 7.37 -39.66 -0.29 -2.06 16 12 C -0.25 -5.21 4.24 -104.33 -0.44 -5.65 16 13 C 0.10 1.88 5.51 -4.98 -0.03 1.86 16 14 N -0.51 -8.68 4.98 -224.82 -1.12 -9.80 16 15 C 0.05 0.76 6.39 -2.83 -0.02 0.74 16 16 C -0.14 -2.13 6.97 -24.77 -0.17 -2.30 16 17 C -0.11 -1.77 6.26 -24.46 -0.15 -1.92 16 18 C 0.05 0.76 2.29 -66.19 -0.15 0.61 16 19 H 0.11 2.07 4.13 -51.93 -0.21 1.86 16 20 C 0.25 3.85 3.94 37.16 0.15 3.99 16 21 O -0.36 -5.11 10.24 -59.03 -0.60 -5.71 16 22 C 0.01 0.10 7.95 38.16 0.30 0.41 16 23 C 0.02 0.22 8.08 38.16 0.31 0.53 16 24 O -0.38 -5.65 11.02 -59.03 -0.65 -6.30 16 25 C -0.09 -2.00 8.59 -39.66 -0.34 -2.34 16 26 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.73 7.85 -52.49 -0.41 1.31 16 30 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 32 H 0.06 1.07 5.18 -51.93 -0.27 0.80 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.05 7.21 -51.93 -0.37 0.68 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.77 6.89 -52.49 -0.36 1.40 16 44 H 0.12 3.07 6.18 -52.48 -0.32 2.75 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -28.00 344.98 -10.75 -38.75 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.57 Total: 9.00 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -2.58 Total: -24.94 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: -0.51 Total: -29.56 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.25 Total: -12.01 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.00 -10.75 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933902941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.772 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds