Wall clock time and date at job start Tue Mar 31 2020 08:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48502 * 109.47140 * 240.00834 * 3 2 1 5 5 H 1.48507 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47166 * 119.99978 * 3 2 1 7 7 C 1.39890 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 197.92949 * 7 2 1 9 9 C 1.41214 * 119.99935 * 17.93312 * 7 2 1 10 10 C 1.40832 * 120.18233 * 24.54383 * 9 7 2 11 11 C 1.36442 * 119.81268 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18640 * 0.02562 * 11 10 9 13 13 O 1.35667 * 119.82130 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00481 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47203 * 180.02562 * 14 13 12 16 16 H 1.08994 * 109.47337 * 305.00016 * 15 14 13 17 17 O 1.42898 * 109.46898 * 65.00130 * 15 14 13 18 18 C 1.52994 * 109.47027 * 184.99753 * 15 14 13 19 19 N 1.46895 * 109.47481 * 180.02562 * 18 15 14 20 20 C 1.46901 * 111.00206 * 180.02562 * 19 18 15 21 21 C 1.54633 * 111.03370 * 267.02010 * 20 19 18 22 22 C 1.51106 * 104.72485 * 217.33689 * 21 20 19 23 23 C 1.30520 * 111.10544 * 16.43983 * 22 21 20 24 24 C 1.51104 * 111.10611 * 359.97438 * 23 22 21 25 25 C 1.39316 * 120.35987 * 0.25261 * 12 11 10 26 26 C 1.36428 * 120.18903 * 359.48409 * 25 12 11 27 27 H 0.96995 * 119.99844 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.09298 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.90647 * 179.97438 * 11 10 9 30 30 H 1.08992 * 109.47182 * 59.99835 * 14 13 12 31 31 H 1.09001 * 109.46714 * 300.00233 * 14 13 12 32 32 H 0.96699 * 114.00312 * 59.99941 * 17 15 14 33 33 H 1.09005 * 109.47285 * 59.99639 * 18 15 14 34 34 H 1.09003 * 109.47621 * 300.00746 * 18 15 14 35 35 H 1.00901 * 110.99965 * 56.04695 * 19 18 15 36 36 H 1.08994 * 110.91660 * 31.03115 * 20 19 18 37 37 H 1.09004 * 110.38568 * 336.14662 * 21 20 19 38 38 H 1.09001 * 110.38513 * 98.52157 * 21 20 19 39 39 H 1.08004 * 124.44700 * 196.45877 * 22 21 20 40 40 H 1.08001 * 124.44928 * 180.02562 * 23 22 21 41 41 H 1.08998 * 110.39066 * 224.75732 * 24 23 22 42 42 H 1.09000 * 110.38372 * 102.37753 * 24 23 22 43 43 H 1.08007 * 119.90120 * 179.72493 * 25 12 11 44 44 H 1.08003 * 120.09885 * 180.25782 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2343 0.2874 9 6 1.3537 -2.4045 -0.3776 10 6 0.2246 -2.3575 -1.2180 11 6 -0.4024 -3.5148 -1.5772 12 6 0.0710 -4.7406 -1.1147 13 8 -0.5585 -5.8868 -1.4761 14 6 -0.0225 -7.1097 -0.9668 15 6 -0.8578 -8.2850 -1.4788 16 1 -1.9044 -8.1275 -1.2187 17 8 -0.7287 -8.3781 -2.8989 18 6 -0.3619 -9.5815 -0.8356 19 7 -1.1633 -10.7100 -1.3276 20 6 -0.7148 -11.9746 -0.7295 21 6 0.3300 -12.6744 -1.6293 22 6 0.0169 -14.1476 -1.5071 23 6 -1.1751 -14.3351 -1.0097 24 6 -1.8557 -13.0183 -0.7166 25 6 1.1838 -4.7955 -0.2783 26 6 1.8255 -3.6480 0.0859 27 1 -0.4850 0.8400 0.0004 28 1 -0.1439 -1.4079 -1.5771 29 1 -1.2687 -3.4804 -2.2213 30 1 -0.0489 -7.0921 0.1227 31 1 1.0080 -7.2228 -1.3035 32 1 0.1784 -8.5187 -3.2031 33 1 -0.4602 -9.5105 0.2477 34 1 0.6849 -9.7390 -1.0957 35 1 -1.1400 -10.7580 -2.3352 36 1 -0.3219 -11.8126 0.2742 37 1 0.2204 -12.3474 -2.6634 38 1 1.3385 -12.4694 -1.2702 39 1 0.6912 -14.9413 -1.7935 40 1 -1.6167 -15.3042 -0.8303 41 1 -2.3333 -13.0473 0.2627 42 1 -2.5881 -12.7889 -1.4906 43 1 1.5419 -5.7496 0.0795 44 1 2.6906 -3.6925 0.7310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120466228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:14 Heat of formation + Delta-G solvation = -54.076140 kcal Electronic energy + Delta-G solvation = -23360.318107 eV Core-core repulsion = 19856.591089 eV Total energy + Delta-G solvation = -3503.727018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.52754 -38.91799 -37.57266 -36.10521 -34.35271 -33.31828 -30.73130 -29.63731 -29.00467 -28.50553 -27.58896 -25.06807 -24.18497 -21.99222 -21.01195 -20.63001 -20.52496 -19.10624 -17.38425 -17.31137 -16.62945 -16.43800 -16.26198 -15.74004 -15.23551 -14.94444 -14.39374 -13.97093 -13.91838 -13.58516 -13.13547 -13.01879 -12.80896 -12.49303 -12.35345 -12.25436 -12.13924 -11.85354 -11.76137 -11.67777 -11.50026 -11.39826 -11.12656 -10.97101 -10.80675 -10.62348 -10.05393 -9.94253 -9.83804 -9.33470 -9.25251 -9.01717 -8.68277 -7.64504 -7.03231 -6.72233 -4.25563 1.90445 2.78973 2.94956 3.07949 3.10244 3.22337 3.49495 3.95008 4.13279 4.31001 4.37984 4.42680 4.62034 4.73288 4.90670 4.93320 4.99391 5.14224 5.21609 5.30740 5.34241 5.40939 5.47358 5.56369 5.61861 5.66576 5.67117 5.70868 6.04799 6.06579 6.16910 6.22990 6.51819 6.70530 6.74515 6.97587 7.10297 7.11208 7.18524 7.45968 7.55294 7.60432 7.78962 8.00284 8.20446 8.45209 8.65206 8.89760 8.98699 10.22230 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.049509 B = 0.002033 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.415315 B =13768.549349 C =13992.781736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.112 3.888 16 H 0.115 0.885 17 O -0.550 6.550 18 C 0.031 3.969 19 N -0.674 5.674 20 C 0.082 3.918 21 C -0.131 4.131 22 C -0.170 4.170 23 C -0.164 4.164 24 C -0.093 4.093 25 C -0.168 4.168 26 C -0.199 4.199 27 H 0.281 0.719 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.369 0.631 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.351 0.649 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -21.374 -1.866 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.132 0.868 17 O -0.354 6.354 18 C -0.098 4.098 19 N -0.305 5.305 20 C -0.028 4.028 21 C -0.170 4.170 22 C -0.188 4.188 23 C -0.182 4.182 24 C -0.130 4.130 25 C -0.187 4.187 26 C -0.219 4.219 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.215 0.785 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.925 -20.997 -1.482 21.137 hybrid contribution 2.116 0.365 -0.114 2.150 sum 0.191 -20.632 -1.596 20.694 Atomic orbital electron populations 1.69826 1.07497 1.29259 1.35854 1.25881 0.94727 1.01217 0.92389 0.86379 0.80124 0.80368 0.79884 1.18889 1.20377 1.19123 1.19421 0.98067 0.91266 1.40646 0.90607 1.17597 0.91872 0.92102 0.89877 1.20985 0.98488 0.96320 0.99501 1.19848 1.00820 0.90222 1.02873 1.18619 0.97029 0.84845 1.04751 1.85886 1.54533 1.12012 1.70837 1.23085 0.96928 0.85189 0.98615 1.21971 1.01736 0.90359 0.80698 0.86762 1.86652 1.32565 1.95296 1.20896 1.22567 0.95048 0.91137 1.01081 1.60339 1.55350 1.01609 1.13210 1.22477 0.93518 0.88829 0.97985 1.22154 1.00351 0.93973 1.00503 1.23166 0.97705 0.96905 1.01019 1.23344 0.96306 0.98609 0.99935 1.21373 0.97992 0.91145 1.02529 1.20389 0.98056 0.97712 1.02548 1.20550 1.03144 0.92546 1.05629 0.90843 0.85652 0.88410 0.92329 0.93107 0.78490 0.89697 0.94623 0.82899 0.89433 0.90520 0.91301 0.86096 0.85867 0.90885 0.89761 0.88995 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.96 55.54 0.61 -20.16 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 11 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 13 O -0.32 -6.53 10.09 -23.55 -0.24 -6.76 16 14 C 0.04 0.59 4.37 37.16 0.16 0.75 16 15 C 0.11 1.38 3.52 -26.73 -0.09 1.28 16 16 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 17 O -0.55 -7.00 12.64 -40.08 -0.51 -7.51 16 18 C 0.03 0.30 5.25 -3.83 -0.02 0.28 16 19 N -0.67 -6.17 6.37 -104.92 -0.67 -6.84 16 20 C 0.08 0.67 3.49 -66.00 -0.23 0.44 16 21 C -0.13 -0.96 6.51 -26.83 -0.17 -1.14 16 22 C -0.17 -1.22 10.77 -35.69 -0.38 -1.60 16 23 C -0.16 -1.17 10.77 -35.69 -0.38 -1.55 16 24 C -0.09 -0.72 6.55 -26.83 -0.18 -0.90 16 25 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 26 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 27 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 28 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.06 0.86 7.63 -51.93 -0.40 0.46 16 31 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 32 H 0.37 3.43 9.05 45.56 0.41 3.84 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.35 3.20 7.47 -39.29 -0.29 2.90 16 36 H 0.09 0.72 7.83 -51.93 -0.41 0.31 16 37 H 0.08 0.56 7.56 -51.93 -0.39 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.09 1.78 6.27 -52.48 -0.33 1.45 16 44 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -29.33 362.72 -10.33 -39.66 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.90 Total: 11.10 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -4.06 Total: -28.66 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: -0.06 Total: -26.99 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.74 Total: -14.27 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.33 -10.33 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120466228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.414 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds