Wall clock time and date at job start Tue Mar 31 2020 08:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48502 * 109.47140 * 240.00834 * 3 2 1 5 5 H 1.48507 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47166 * 119.99978 * 3 2 1 7 7 C 1.39890 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 197.92949 * 7 2 1 9 9 C 1.41214 * 119.99935 * 17.93312 * 7 2 1 10 10 C 1.40832 * 120.18233 * 24.54383 * 9 7 2 11 11 C 1.36442 * 119.81268 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18640 * 0.02562 * 11 10 9 13 13 O 1.35667 * 119.82130 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00481 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47203 * 180.02562 * 14 13 12 16 16 H 1.08994 * 109.47337 * 305.00016 * 15 14 13 17 17 O 1.42898 * 109.46898 * 65.00130 * 15 14 13 18 18 C 1.52994 * 109.47027 * 184.99753 * 15 14 13 19 19 N 1.46895 * 109.47481 * 180.02562 * 18 15 14 20 20 C 1.46901 * 111.00206 * 180.02562 * 19 18 15 21 21 C 1.54633 * 111.03370 * 267.02010 * 20 19 18 22 22 C 1.51106 * 104.72485 * 217.33689 * 21 20 19 23 23 C 1.30520 * 111.10544 * 16.43983 * 22 21 20 24 24 C 1.51104 * 111.10611 * 359.97438 * 23 22 21 25 25 C 1.39316 * 120.35987 * 0.25261 * 12 11 10 26 26 C 1.36428 * 120.18903 * 359.48409 * 25 12 11 27 27 H 0.96995 * 119.99844 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.09298 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.90647 * 179.97438 * 11 10 9 30 30 H 1.08992 * 109.47182 * 59.99835 * 14 13 12 31 31 H 1.09001 * 109.46714 * 300.00233 * 14 13 12 32 32 H 0.96699 * 114.00312 * 59.99941 * 17 15 14 33 33 H 1.09005 * 109.47285 * 59.99639 * 18 15 14 34 34 H 1.09003 * 109.47621 * 300.00746 * 18 15 14 35 35 H 1.00901 * 110.99965 * 56.04695 * 19 18 15 36 36 H 1.08994 * 110.91660 * 31.03115 * 20 19 18 37 37 H 1.09004 * 110.38568 * 336.14662 * 21 20 19 38 38 H 1.09001 * 110.38513 * 98.52157 * 21 20 19 39 39 H 1.08004 * 124.44700 * 196.45877 * 22 21 20 40 40 H 1.08001 * 124.44928 * 180.02562 * 23 22 21 41 41 H 1.08998 * 110.39066 * 224.75732 * 24 23 22 42 42 H 1.09000 * 110.38372 * 102.37753 * 24 23 22 43 43 H 1.08007 * 119.90120 * 179.72493 * 25 12 11 44 44 H 1.08003 * 120.09885 * 180.25782 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2343 0.2874 9 6 1.3537 -2.4045 -0.3776 10 6 0.2246 -2.3575 -1.2180 11 6 -0.4024 -3.5148 -1.5772 12 6 0.0710 -4.7406 -1.1147 13 8 -0.5585 -5.8868 -1.4761 14 6 -0.0225 -7.1097 -0.9668 15 6 -0.8578 -8.2850 -1.4788 16 1 -1.9044 -8.1275 -1.2187 17 8 -0.7287 -8.3781 -2.8989 18 6 -0.3619 -9.5815 -0.8356 19 7 -1.1633 -10.7100 -1.3276 20 6 -0.7148 -11.9746 -0.7295 21 6 0.3300 -12.6744 -1.6293 22 6 0.0169 -14.1476 -1.5071 23 6 -1.1751 -14.3351 -1.0097 24 6 -1.8557 -13.0183 -0.7166 25 6 1.1838 -4.7955 -0.2783 26 6 1.8255 -3.6480 0.0859 27 1 -0.4850 0.8400 0.0004 28 1 -0.1439 -1.4079 -1.5771 29 1 -1.2687 -3.4804 -2.2213 30 1 -0.0489 -7.0921 0.1227 31 1 1.0080 -7.2228 -1.3035 32 1 0.1784 -8.5187 -3.2031 33 1 -0.4602 -9.5105 0.2477 34 1 0.6849 -9.7390 -1.0957 35 1 -1.1400 -10.7580 -2.3352 36 1 -0.3219 -11.8126 0.2742 37 1 0.2204 -12.3474 -2.6634 38 1 1.3385 -12.4694 -1.2702 39 1 0.6912 -14.9413 -1.7935 40 1 -1.6167 -15.3042 -0.8303 41 1 -2.3333 -13.0473 0.2627 42 1 -2.5881 -12.7889 -1.4906 43 1 1.5419 -5.7496 0.0795 44 1 2.6906 -3.6925 0.7310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120466228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:13 Heat of formation + Delta-G solvation = -72.568305 kcal Electronic energy + Delta-G solvation = -23361.119988 eV Core-core repulsion = 19856.591089 eV Total energy + Delta-G solvation = -3504.528899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69563 -39.99629 -38.81281 -37.66442 -35.20095 -35.08727 -32.05555 -31.26382 -30.78824 -29.08039 -28.44765 -26.73158 -25.38094 -23.21348 -22.45375 -22.27480 -21.45526 -19.64184 -19.25557 -18.76778 -17.73970 -17.46273 -17.15030 -16.98178 -16.44549 -15.99766 -15.82993 -15.71998 -15.16088 -14.81565 -14.48784 -14.08070 -13.97258 -13.74845 -13.56901 -13.52838 -13.20375 -13.02310 -12.95592 -12.78663 -12.63170 -12.42433 -12.36645 -12.33092 -12.04876 -11.93340 -11.70175 -11.59012 -11.22075 -10.98108 -10.87182 -9.79952 -9.56575 -9.35877 -8.92691 -8.59511 -6.22759 0.95282 1.02444 1.37044 1.39799 1.50760 1.54977 2.22739 2.38118 2.72672 3.20326 3.46965 3.69931 3.73492 3.76375 3.97803 4.03146 4.05072 4.16102 4.28762 4.35778 4.36138 4.41096 4.46549 4.58512 4.76803 4.78109 4.82133 4.86789 4.98500 5.04707 5.07663 5.09946 5.12157 5.21673 5.28275 5.58569 5.63481 5.64261 5.88197 5.98887 6.05269 6.05849 6.26198 6.40727 6.56437 6.77494 6.82545 6.94907 7.10268 8.36958 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.049509 B = 0.002033 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.415315 B =13768.549349 C =13992.781736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.000 4.000 13 O -0.332 6.332 14 C 0.030 3.970 15 C 0.123 3.877 16 H 0.097 0.903 17 O -0.565 6.565 18 C 0.042 3.958 19 N -0.681 5.681 20 C 0.082 3.918 21 C -0.129 4.129 22 C -0.176 4.176 23 C -0.169 4.169 24 C -0.094 4.094 25 C -0.165 4.165 26 C -0.208 4.208 27 H 0.287 0.713 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.384 0.616 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.350 0.650 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.130 0.870 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -22.840 -1.585 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.044 4.044 13 O -0.248 6.248 14 C -0.046 4.046 15 C 0.064 3.936 16 H 0.115 0.885 17 O -0.372 6.372 18 C -0.087 4.087 19 N -0.313 5.313 20 C -0.028 4.028 21 C -0.168 4.168 22 C -0.194 4.194 23 C -0.187 4.187 24 C -0.132 4.132 25 C -0.183 4.183 26 C -0.227 4.227 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.148 0.852 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.887 -22.499 -1.202 22.549 hybrid contribution 1.730 0.618 -0.230 1.851 sum 0.843 -21.881 -1.433 21.944 Atomic orbital electron populations 1.69888 1.08996 1.30540 1.36398 1.26758 0.95491 1.04546 0.91365 0.85246 0.78723 0.75668 0.80014 1.18553 1.19381 1.18329 1.19686 0.98391 0.92393 1.42420 0.90484 1.17965 0.92657 0.93423 0.90801 1.20902 0.99376 0.96374 1.00627 1.20015 1.01227 0.90749 1.03389 1.18686 0.96648 0.85491 1.03545 1.85879 1.54931 1.12797 1.71146 1.23489 0.98256 0.83561 0.99325 1.21823 1.00387 0.90655 0.80784 0.88532 1.86619 1.34170 1.95317 1.21091 1.22424 0.95733 0.89597 1.00963 1.60317 1.55682 1.02006 1.13298 1.22485 0.93881 0.88365 0.98075 1.22128 1.00260 0.94085 1.00311 1.23344 0.97977 0.97129 1.00927 1.23476 0.96375 0.98842 1.00033 1.21375 0.97875 0.91611 1.02348 1.20700 0.97276 0.98715 1.01622 1.20809 1.03677 0.92556 1.05695 0.90206 0.87274 0.87622 0.91387 0.91484 0.76705 0.89207 0.92999 0.82918 0.89351 0.90514 0.90859 0.84891 0.84605 0.90786 0.90544 0.85239 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.32 10.96 21.82 0.24 -44.09 16 2 C 0.03 1.65 5.13 85.23 0.44 2.09 16 3 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 8 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.15 -8.35 8.64 22.49 0.19 -8.15 16 11 C -0.13 -6.74 9.92 22.11 0.22 -6.52 16 12 C 0.00 0.01 6.71 22.79 0.15 0.16 16 13 O -0.33 -13.19 10.09 -85.20 -0.86 -14.05 16 14 C 0.03 0.83 4.37 71.98 0.31 1.15 16 15 C 0.12 2.80 3.52 30.59 0.11 2.91 16 16 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 17 O -0.57 -13.39 12.64 -144.34 -1.82 -15.21 16 18 C 0.04 0.69 5.25 86.30 0.45 1.15 16 19 N -0.68 -11.26 6.37 -485.87 -3.09 -14.35 16 20 C 0.08 1.18 3.49 46.02 0.16 1.34 16 21 C -0.13 -1.64 6.51 30.53 0.20 -1.44 16 22 C -0.18 -2.18 10.77 26.27 0.28 -1.89 16 23 C -0.17 -2.13 10.77 26.27 0.28 -1.85 16 24 C -0.09 -1.34 6.55 30.53 0.20 -1.14 16 25 C -0.16 -7.17 8.96 22.11 0.20 -6.97 16 26 C -0.21 -10.16 9.74 22.48 0.22 -9.94 16 27 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 28 H 0.11 6.17 6.16 -2.91 -0.02 6.15 16 29 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.07 1.79 7.63 -2.39 -0.02 1.77 16 31 H 0.07 1.67 7.66 -2.39 -0.02 1.65 16 32 H 0.38 6.26 9.05 -74.06 -0.67 5.59 16 33 H 0.09 1.41 8.09 -2.38 -0.02 1.39 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.35 5.81 7.47 -89.69 -0.67 5.14 16 36 H 0.09 1.26 7.83 -2.39 -0.02 1.24 16 37 H 0.08 0.98 7.56 -2.38 -0.02 0.96 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 43 H 0.13 4.57 6.27 -2.91 -0.02 4.55 16 44 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -63.64 362.72 -0.32 -63.96 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.33 Total: 36.36 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 3.52 Total: -53.21 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -2.86 Total: -58.44 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -2.68 Total: -29.26 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -63.64 -0.32 -63.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120466228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.607 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds