Wall clock time and date at job start Tue Mar 31 2020 08:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47421 * 270.00361 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00240 * 3 2 1 6 6 H 1.48498 * 109.47443 * 150.00509 * 3 2 1 7 7 C 1.38650 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.47151 * 89.99796 * 14 13 12 16 16 C 1.47576 * 110.99782 * 266.09083 * 15 14 13 17 17 C 1.52983 * 87.80936 * 221.67810 * 16 15 14 18 18 C 1.47570 * 110.99778 * 170.00234 * 15 14 13 19 19 C 1.52635 * 113.99821 * 139.33230 * 17 16 15 20 20 C 1.53351 * 108.93205 * 186.39277 * 19 17 16 21 21 C 1.53167 * 108.94747 * 305.38218 * 20 19 17 22 22 C 1.53042 * 109.42432 * 58.74734 * 21 20 19 23 23 O 1.42375 * 114.20054 * 271.84149 * 17 16 15 24 24 C 1.38300 * 120.13466 * 359.97438 * 13 12 11 25 25 C 1.38104 * 120.06821 * 0.02846 * 24 13 12 26 26 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.96229 * 180.29772 * 12 11 10 29 29 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 30 30 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 31 31 H 1.09000 * 113.50222 * 336.41816 * 16 15 14 32 32 H 1.09004 * 113.49335 * 106.94842 * 16 15 14 33 33 H 1.08997 * 113.49803 * 253.05031 * 18 15 14 34 34 H 1.09002 * 113.49769 * 23.58535 * 18 15 14 35 35 H 1.09000 * 109.56402 * 306.22947 * 19 17 16 36 36 H 1.09005 * 109.56325 * 66.56355 * 19 17 16 37 37 H 1.09001 * 109.55869 * 185.54308 * 20 19 17 38 38 H 1.08998 * 109.64457 * 65.27168 * 20 19 17 39 39 H 1.09003 * 109.47646 * 298.76772 * 21 20 19 40 40 H 1.08992 * 109.48583 * 178.74086 * 21 20 19 41 41 H 1.08995 * 109.48076 * 180.56741 * 22 21 20 42 42 H 1.09005 * 109.48600 * 60.54669 * 22 21 20 43 43 H 1.07996 * 119.96723 * 179.97438 * 24 13 12 44 44 H 1.08003 * 120.03296 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5965 0.2059 13 6 3.5689 -5.8198 0.3275 14 6 4.3852 -7.0803 0.4521 15 7 4.6512 -7.3533 1.8709 16 6 5.9504 -6.7878 2.2836 17 6 6.1940 -8.0759 3.0722 18 6 5.2386 -8.6951 2.0502 19 6 7.6249 -8.5992 2.9796 20 6 7.7008 -9.9654 3.6718 21 6 7.1691 -9.8287 5.1017 22 6 5.7263 -9.3196 5.0618 23 8 5.6876 -8.0504 4.4026 24 6 2.1877 -5.8884 0.3361 25 6 1.4368 -4.7349 0.2226 26 1 -0.4850 0.8401 0.0004 27 1 3.9527 -2.4845 -0.0033 28 1 5.2814 -4.5459 0.2003 29 1 3.8338 -7.9146 0.0188 30 1 5.3299 -6.9552 -0.0771 31 1 6.6456 -6.6467 1.4561 32 1 5.8587 -5.9032 2.9139 33 1 4.5473 -9.4177 2.4837 34 1 5.7404 -9.0724 1.1591 35 1 7.9079 -8.7045 1.9323 36 1 8.3013 -7.9017 3.4737 37 1 8.7365 -10.3040 3.6985 38 1 7.0947 -10.6876 3.1247 39 1 7.7887 -9.1220 5.6538 40 1 7.1982 -10.8002 5.5949 41 1 5.3504 -9.2124 6.0792 42 1 5.1047 -10.0308 4.5177 43 1 1.6957 -6.8452 0.4308 44 1 0.3581 -4.7893 0.2290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:54 Heat of formation + Delta-G solvation = -11.266405 kcal Electronic energy + Delta-G solvation = -24277.973496 eV Core-core repulsion = 20776.102847 eV Total energy + Delta-G solvation = -3501.870649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14863 -38.97534 -37.76684 -36.32401 -33.97944 -32.44733 -31.70693 -30.11286 -29.66196 -26.77158 -26.19850 -25.30831 -24.57705 -23.01654 -21.89139 -21.22113 -20.24800 -19.33408 -17.92221 -16.91642 -16.54816 -16.40956 -15.57065 -15.20802 -14.99067 -14.59800 -14.46735 -14.29239 -14.05630 -13.85470 -13.50707 -13.31363 -13.09962 -12.93037 -12.67943 -12.62866 -12.26982 -11.87964 -11.71036 -11.48888 -11.39965 -11.23762 -11.09248 -10.93638 -10.70434 -10.57025 -10.51405 -10.38401 -10.18433 -9.57536 -9.27763 -8.81473 -8.73287 -8.10279 -7.11233 -6.40714 -3.99395 2.29518 2.35403 3.15052 3.16350 3.21182 3.39840 3.99355 4.01092 4.20584 4.39127 4.51439 4.62365 4.67883 4.74016 4.95109 5.07309 5.12803 5.14289 5.17415 5.26982 5.34008 5.35328 5.41024 5.46249 5.51495 5.61606 5.62882 5.66805 5.74551 5.76218 5.81657 5.86551 5.90033 5.96723 6.25095 6.32701 6.51471 6.76824 6.95370 7.05936 7.12108 7.14955 7.32576 7.45556 7.49854 7.89506 8.04597 9.05068 9.76247 10.77536 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.002669 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.218025 B =10488.819932 C =10863.793905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.234 4.234 12 C -0.063 4.063 13 C -0.173 4.173 14 C 0.076 3.924 15 N -0.449 5.449 16 C 0.015 3.985 17 C 0.090 3.910 18 C -0.027 4.027 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.157 4.157 22 C 0.059 3.941 23 O -0.340 6.340 24 C -0.055 4.055 25 C -0.193 4.193 26 H 0.269 0.731 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.478 -19.349 5.710 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.253 4.253 12 C -0.082 4.082 13 C -0.174 4.174 14 C -0.051 4.051 15 N -0.171 5.171 16 C -0.113 4.113 17 C 0.049 3.951 18 C -0.157 4.157 19 C -0.173 4.173 20 C -0.158 4.158 21 C -0.195 4.195 22 C -0.018 4.018 23 O -0.258 6.258 24 C -0.074 4.074 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.319 -18.759 6.085 24.371 hybrid contribution 1.276 0.396 -0.618 1.472 sum 15.595 -18.363 5.467 24.704 Atomic orbital electron populations 1.70043 1.05943 1.27582 1.46332 1.25280 0.95834 0.98798 0.96644 0.85721 0.78940 0.80167 0.78647 1.19933 1.20267 1.19212 1.21314 0.91767 0.80879 1.52749 0.89139 1.83978 1.34322 1.11438 1.78527 1.19386 0.90279 0.88032 0.92141 1.21105 0.93826 0.98753 1.11625 1.20531 0.97899 0.91899 0.97842 1.18968 0.93483 0.93276 1.11704 1.21415 0.98290 0.96580 0.88851 1.69145 1.25281 1.03670 1.19032 1.23938 0.91476 0.97981 0.97946 1.22123 0.91794 0.97599 0.83616 1.24395 0.97574 0.95051 0.98644 1.21987 0.96323 0.97435 1.01514 1.21581 1.01451 0.97014 0.95760 1.22177 0.97828 1.01966 0.97486 1.22589 0.95405 0.85996 0.97783 1.87980 1.83229 1.30051 1.24558 1.20433 0.92845 0.96652 0.97468 1.20200 0.99514 0.90346 1.11201 0.92076 0.85683 0.88090 0.90971 0.93835 0.90209 0.88782 0.89703 0.90993 0.90674 0.90688 0.91503 0.91720 0.91034 0.90962 0.88743 0.93082 0.87270 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.16 9.49 30.88 0.29 -10.87 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 12 C -0.06 -1.19 9.69 -39.61 -0.38 -1.58 16 13 C -0.17 -3.08 5.47 -104.58 -0.57 -3.66 16 14 C 0.08 1.06 4.94 -4.98 -0.02 1.04 16 15 N -0.45 -6.26 6.32 -246.07 -1.55 -7.82 16 16 C 0.02 0.19 7.14 -7.31 -0.05 0.14 16 17 C 0.09 0.96 1.17 -90.82 -0.11 0.85 16 18 C -0.03 -0.29 6.87 -7.30 -0.05 -0.34 16 19 C -0.13 -1.08 5.31 -26.74 -0.14 -1.22 16 20 C -0.12 -0.81 6.00 -26.46 -0.16 -0.97 16 21 C -0.16 -1.10 6.08 -26.62 -0.16 -1.26 16 22 C 0.06 0.52 6.76 37.18 0.25 0.77 16 23 O -0.34 -4.25 10.55 -35.23 -0.37 -4.62 16 24 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 25 C -0.19 -4.27 9.99 -39.39 -0.39 -4.67 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 27 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 28 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 30 H 0.04 0.54 7.25 -51.93 -0.38 0.17 16 31 H 0.08 0.83 7.37 -51.93 -0.38 0.45 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 0.91 7.43 -51.93 -0.39 0.53 16 34 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 35 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.43 7.39 -51.93 -0.38 0.04 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.24 354.62 -10.14 -42.38 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.70 Total: 3.32 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.60 Total: -24.18 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: -0.80 Total: -32.85 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.37 Total: -9.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.24 -10.14 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.117 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds