Wall clock time and date at job start Tue Mar 31 2020 08:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48503 * 109.47411 * 270.00124 * 3 2 1 5 5 H 1.48504 * 109.47255 * 30.00219 * 3 2 1 6 6 H 1.48499 * 109.47106 * 150.00077 * 3 2 1 7 7 C 1.38650 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00326 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00178 * 180.27491 * 7 2 1 10 10 C 1.35746 * 117.00531 * 174.66237 * 9 7 2 11 11 C 1.38870 * 120.07171 * 185.25575 * 10 9 7 12 12 C 1.38107 * 119.92949 * 179.74696 * 11 10 9 13 13 C 1.38302 * 120.06984 * 0.53903 * 12 11 10 14 14 C 1.50698 * 119.93303 * 179.72161 * 13 12 11 15 15 N 1.46900 * 109.47097 * 270.01945 * 14 13 12 16 16 C 1.46349 * 111.00139 * 66.04409 * 15 14 13 17 17 C 1.53795 * 111.82051 * 181.52206 * 16 15 14 18 18 C 1.51882 * 106.99353 * 303.18881 * 17 16 15 19 19 H 1.08998 * 110.81407 * 301.18745 * 18 17 16 20 20 C 1.53134 * 116.04935 * 173.58053 * 18 17 16 21 21 C 1.55136 * 103.00802 * 218.72742 * 20 18 17 22 22 O 1.45129 * 107.06736 * 1.95552 * 21 20 18 23 23 C 1.42130 * 105.09699 * 27.05528 * 22 21 20 24 24 H 1.08997 * 109.60265 * 71.60686 * 23 22 21 25 25 C 1.47708 * 111.00128 * 193.32556 * 15 14 13 26 26 C 1.38303 * 120.13384 * 359.73683 * 13 12 11 27 27 C 1.38093 * 120.07308 * 359.97438 * 26 13 12 28 28 H 0.96999 * 119.99818 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03617 * 0.03027 * 11 10 9 30 30 H 1.07998 * 119.96549 * 180.27491 * 12 11 10 31 31 H 1.09003 * 109.47048 * 30.01362 * 14 13 12 32 32 H 1.08998 * 109.47032 * 150.01578 * 14 13 12 33 33 H 1.09008 * 109.01124 * 302.12585 * 16 15 14 34 34 H 1.09002 * 109.01078 * 60.99165 * 16 15 14 35 35 H 1.09002 * 109.95008 * 62.55624 * 17 16 15 36 36 H 1.08992 * 109.95089 * 183.81624 * 17 16 15 37 37 H 1.08998 * 110.70457 * 337.10390 * 20 18 17 38 38 H 1.09000 * 110.70730 * 100.34937 * 20 18 17 39 39 H 1.08999 * 109.92125 * 121.31837 * 21 20 18 40 40 H 1.09003 * 109.91617 * 242.60545 * 21 20 18 41 41 H 1.09007 * 109.91098 * 294.89655 * 25 15 14 42 42 H 1.08997 * 109.91538 * 56.05547 * 25 15 14 43 43 H 1.08001 * 119.95922 * 180.02562 * 26 13 12 44 44 H 1.08005 * 120.03536 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3571 -1.2008 0.0051 10 6 3.9730 -2.4054 0.1167 11 6 5.3547 -2.4718 0.2390 12 6 5.9778 -3.6986 0.3576 13 6 5.2282 -4.8608 0.3436 14 6 5.9118 -6.1981 0.4670 15 7 6.2588 -6.6959 -0.8709 16 6 7.2690 -5.8453 -1.5014 17 6 7.6191 -6.3282 -2.9190 18 6 8.0800 -7.7701 -2.7955 19 1 8.9417 -7.8459 -2.1324 20 6 8.3378 -8.5088 -4.1120 21 6 7.7975 -9.9342 -3.8241 22 8 7.2553 -9.9205 -2.4780 23 6 6.8644 -8.5732 -2.2501 24 1 5.9794 -8.3438 -2.8434 25 6 6.6356 -8.1234 -0.8232 26 6 3.8525 -4.7982 0.2162 27 6 3.2230 -3.5743 0.1031 28 1 -0.4850 0.8401 -0.0004 29 1 5.9410 -1.5648 0.2459 30 1 7.0519 -3.7507 0.4572 31 1 6.8195 -6.0887 1.0605 32 1 5.2413 -6.9052 0.9552 33 1 6.8893 -4.8250 -1.5574 34 1 8.1721 -5.8546 -0.8911 35 1 6.7383 -6.2728 -3.5588 36 1 8.4200 -5.7160 -3.3332 37 1 7.7850 -8.0448 -4.9288 38 1 9.4043 -8.5385 -4.3347 39 1 7.0129 -10.1852 -4.5379 40 1 8.6089 -10.6592 -3.8902 41 1 7.5507 -8.2466 -0.2438 42 1 5.8303 -8.7052 -0.3750 43 1 3.2698 -5.7075 0.2059 44 1 2.1486 -3.5260 0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:15 Heat of formation + Delta-G solvation = -36.827764 kcal Electronic energy + Delta-G solvation = -24473.766156 eV Core-core repulsion = 20970.787083 eV Total energy + Delta-G solvation = -3502.979073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66394 -39.26157 -37.80811 -36.32118 -33.70386 -32.41838 -31.26042 -30.37691 -29.94880 -28.99530 -26.03372 -24.73188 -23.43195 -22.66595 -21.96433 -21.50406 -20.40935 -20.16964 -17.88671 -17.26823 -16.38844 -16.21053 -15.75725 -15.44107 -15.31556 -14.86054 -14.44191 -14.20437 -13.89214 -13.72230 -13.66584 -13.48415 -13.06432 -12.80359 -12.67376 -12.51295 -12.44046 -12.19434 -11.80594 -11.49122 -11.33958 -11.29063 -11.00977 -10.86912 -10.76043 -10.69764 -10.61447 -10.36596 -10.14972 -9.79308 -9.38536 -8.87621 -8.30916 -8.21930 -7.32042 -6.42255 -4.08916 2.11360 2.16566 3.21433 3.24482 3.32587 3.39202 3.96613 4.22820 4.30867 4.42992 4.50855 4.57679 4.79813 4.83956 4.92116 5.06820 5.08179 5.11010 5.13429 5.28683 5.31958 5.33937 5.44340 5.51259 5.54400 5.64069 5.66003 5.71349 5.73432 5.79080 5.79765 5.84274 6.00097 6.11333 6.13919 6.33565 6.55862 6.59374 6.78983 6.98028 7.03161 7.15728 7.27121 7.33777 7.61066 7.80065 8.03355 8.92991 9.55456 10.65404 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002735 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.206873 B =10234.840182 C =10334.678275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.194 4.194 12 C -0.071 4.071 13 C -0.171 4.171 14 C 0.119 3.881 15 N -0.540 5.540 16 C 0.058 3.942 17 C -0.106 4.106 18 C -0.130 4.130 19 H 0.081 0.919 20 C -0.149 4.149 21 C 0.048 3.952 22 O -0.370 6.370 23 C 0.074 3.926 24 H 0.074 0.926 25 C 0.073 3.927 26 C -0.050 4.050 27 C -0.222 4.222 28 H 0.279 0.721 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.545 -15.656 -4.954 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.213 4.213 12 C -0.089 4.089 13 C -0.173 4.173 14 C -0.007 4.007 15 N -0.267 5.267 16 C -0.070 4.070 17 C -0.143 4.143 18 C -0.149 4.149 19 H 0.099 0.901 20 C -0.186 4.186 21 C -0.029 4.029 22 O -0.289 6.289 23 C 0.016 3.984 24 H 0.092 0.908 25 C -0.055 4.055 26 C -0.069 4.069 27 C -0.241 4.241 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.006 -15.450 -5.107 22.825 hybrid contribution 0.839 0.766 0.236 1.160 sum 16.845 -14.684 -4.871 22.871 Atomic orbital electron populations 1.69648 1.05571 1.28487 1.48044 1.24471 0.95024 0.98824 0.95694 0.86180 0.80316 0.81455 0.78946 1.19889 1.20825 1.18366 1.20777 0.76892 0.96645 1.52137 0.87589 1.83566 1.22635 1.25866 1.80217 1.19135 0.91689 0.85511 0.92731 1.20156 0.92008 0.97738 1.11382 1.20479 0.98019 0.91513 0.98937 1.19124 0.93704 0.93121 1.11328 1.20731 0.98065 0.94325 0.87564 1.61056 1.43180 1.00455 1.22008 1.22095 0.92657 0.98331 0.93905 1.21498 1.01327 0.94215 0.97308 1.22597 0.98713 0.96362 0.97186 0.90066 1.22719 1.02097 0.95558 0.98254 1.23591 0.97929 0.97262 0.84109 1.88723 1.81442 1.26936 1.31756 1.22497 0.96927 0.81356 0.97661 0.90812 1.21638 1.00227 0.89189 0.94398 1.20618 0.93445 0.96600 0.96210 1.21282 1.01138 0.91870 1.09824 0.91048 0.86665 0.87359 0.94739 0.90508 0.89191 0.95534 0.90584 0.90999 0.90368 0.90521 0.91963 0.89845 0.94262 0.89867 0.87201 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.48 0.77 -24.59 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.58 28.62 -169.99 -4.86 16.72 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.91 9.95 30.88 0.31 -10.60 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 9 O -0.22 -5.71 8.59 0.05 0.00 -5.71 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.19 -3.74 9.99 -39.40 -0.39 -4.13 16 12 C -0.07 -1.15 7.91 -39.61 -0.31 -1.46 16 13 C -0.17 -2.73 4.88 -104.58 -0.51 -3.24 16 14 C 0.12 1.53 5.15 -4.98 -0.03 1.51 16 15 N -0.54 -6.66 4.54 -236.36 -1.07 -7.73 16 16 C 0.06 0.66 5.04 -3.71 -0.02 0.65 16 17 C -0.11 -1.04 5.73 -26.89 -0.15 -1.19 16 18 C -0.13 -1.21 2.72 -89.76 -0.24 -1.45 16 19 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 20 C -0.15 -1.13 6.70 -25.53 -0.17 -1.30 16 21 C 0.05 0.40 7.72 38.29 0.30 0.69 16 22 O -0.37 -4.25 11.52 -35.23 -0.41 -4.65 16 23 C 0.07 0.80 2.85 -26.20 -0.07 0.73 16 24 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 25 C 0.07 0.81 5.53 -4.21 -0.02 0.79 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 C -0.22 -4.73 9.17 -39.39 -0.36 -5.09 16 28 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.11 1.47 8.01 -52.49 -0.42 1.04 16 31 H 0.03 0.41 8.06 -51.93 -0.42 0.00 16 32 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 33 H 0.09 1.18 5.97 -51.92 -0.31 0.87 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 42 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.13 2.98 5.64 -52.48 -0.30 2.68 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -29.34 348.26 -9.49 -38.83 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.75 Total: 2.19 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.43 Total: -20.30 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: -0.30 Total: -32.32 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.41 Total: -10.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.34 -9.49 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.001 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds