Wall clock time and date at job start Tue Mar 31 2020 08:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46665 * 269.99275 * 3 2 1 5 5 H 1.48494 * 109.47527 * 29.99745 * 3 2 1 6 6 H 1.48506 * 109.46835 * 149.99924 * 3 2 1 7 7 C 1.38657 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99393 * 180.02562 * 7 2 1 9 9 O 1.34824 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99743 * 185.05393 * 9 7 2 11 11 C 1.38878 * 120.06932 * 354.46353 * 10 9 7 12 12 C 1.38099 * 119.93230 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.06790 * 0.02686 * 12 11 10 14 14 C 1.50695 * 119.93079 * 179.97438 * 13 12 11 15 15 N 1.46896 * 109.47198 * 90.00106 * 14 13 12 16 16 C 1.47525 * 111.00519 * 69.87215 * 15 14 13 17 17 C 1.54506 * 107.26997 * 123.21805 * 16 15 14 18 18 C 1.54065 * 102.92512 * 21.32516 * 17 16 15 19 19 C 1.53379 * 110.76180 * 207.00663 * 18 17 16 20 20 C 1.55555 * 101.88893 * 216.16484 * 19 18 17 21 21 C 1.55037 * 101.06605 * 33.27360 * 20 19 18 22 22 O 1.42063 * 111.65009 * 85.53698 * 18 17 16 23 23 C 1.48043 * 111.00063 * 190.78173 * 15 14 13 24 24 C 1.38304 * 120.13455 * 0.22897 * 13 12 11 25 25 C 1.38094 * 120.07249 * 359.49037 * 24 13 12 26 26 H 0.97005 * 120.00271 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.03417 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.96741 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.47560 * 329.99589 * 14 13 12 30 30 H 1.09006 * 109.46910 * 209.99595 * 14 13 12 31 31 H 1.08998 * 109.88092 * 242.63666 * 16 15 14 32 32 H 1.08997 * 109.87703 * 3.64688 * 16 15 14 33 33 H 1.09002 * 110.71836 * 139.68400 * 17 16 15 34 34 H 1.09001 * 110.72310 * 262.96146 * 17 16 15 35 35 H 1.08997 * 110.94750 * 334.31422 * 19 18 17 36 36 H 1.09000 * 110.94448 * 98.01791 * 19 18 17 37 37 H 1.09005 * 111.10406 * 275.32438 * 20 19 18 38 38 H 1.09001 * 111.10126 * 151.22916 * 20 19 18 39 39 H 1.09000 * 110.30522 * 205.21413 * 21 20 19 40 40 H 1.09006 * 110.30058 * 83.06625 * 21 20 19 41 41 H 1.09008 * 110.38967 * 333.50249 * 23 15 14 42 42 H 1.09000 * 110.39266 * 95.87679 * 23 15 14 43 43 H 1.08006 * 119.96371 * 179.72561 * 24 13 12 44 44 H 1.08003 * 120.03738 * 180.25859 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0462 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4401 0.7001 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1076 11 6 3.4570 -3.4395 0.0951 12 6 4.2022 -4.5970 0.2048 13 6 3.5684 -5.8202 0.3264 14 6 4.3845 -7.0814 0.4453 15 7 4.6559 -7.3574 1.8624 16 6 3.4252 -7.7641 2.5670 17 6 3.6944 -9.1482 3.1986 18 6 5.2324 -9.2001 3.2724 19 6 5.7303 -10.6501 3.2266 20 6 6.9506 -10.6004 4.1900 21 6 6.4735 -9.5449 5.2205 22 8 5.7214 -8.5842 4.4555 23 6 5.6625 -8.4328 2.0102 24 6 2.1871 -5.8888 0.3339 25 6 1.4363 -4.7344 0.2304 26 1 -0.4851 0.8401 -0.0004 27 1 3.9525 -2.4847 -0.0003 28 1 5.2810 -4.5471 0.1947 29 1 5.3272 -6.9559 -0.0874 30 1 3.8308 -7.9147 0.0125 31 1 3.1883 -7.0405 3.3469 32 1 2.5983 -7.8311 1.8600 33 1 3.2581 -9.2086 4.1956 34 1 3.3118 -9.9445 2.5601 35 1 4.9685 -11.3356 3.5978 36 1 6.0409 -10.9238 2.2183 37 1 7.8477 -10.2638 3.6702 38 1 7.1146 -11.5673 4.6658 39 1 7.3297 -9.0645 5.6939 40 1 5.8369 -10.0113 5.9725 41 1 5.6454 -9.0910 1.1415 42 1 6.6566 -8.0066 2.1452 43 1 1.6950 -6.8460 0.4246 44 1 0.3577 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:19 Heat of formation + Delta-G solvation = -37.500122 kcal Electronic energy + Delta-G solvation = -24358.235123 eV Core-core repulsion = 20855.226895 eV Total energy + Delta-G solvation = -3503.008228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60391 -39.02924 -37.63718 -36.13653 -32.68967 -32.35027 -31.78224 -30.14749 -29.25728 -28.97068 -25.87897 -25.09235 -24.11498 -22.13504 -21.99552 -21.15536 -20.48910 -19.88799 -17.93437 -16.89772 -16.73276 -16.44494 -15.42979 -15.15614 -14.78793 -14.61068 -14.50657 -14.22802 -13.64809 -13.55968 -13.48993 -13.24465 -13.01164 -12.68363 -12.59815 -12.42974 -12.13607 -12.04943 -11.76935 -11.64263 -11.37656 -11.20335 -11.03112 -10.93666 -10.88607 -10.66583 -10.54954 -10.47278 -10.36219 -9.63990 -9.26512 -8.78236 -8.12079 -8.09500 -7.10979 -6.40259 -3.98745 2.28977 2.36363 3.16060 3.17484 3.22338 3.51313 4.01059 4.05989 4.16768 4.31529 4.55466 4.63564 4.68487 4.76376 4.90711 5.11842 5.14495 5.24505 5.29868 5.32687 5.35859 5.41401 5.42200 5.48592 5.56443 5.58438 5.66811 5.71239 5.77752 5.81060 5.86311 5.91415 6.03448 6.25151 6.28093 6.49059 6.76992 6.90852 6.97267 7.09057 7.12575 7.24329 7.33400 7.48825 7.51367 7.89885 8.05302 9.05723 9.76609 10.77982 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.002653 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.018158 B =10550.861779 C =10853.434039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.234 4.234 12 C -0.050 4.050 13 C -0.176 4.176 14 C 0.108 3.892 15 N -0.517 5.517 16 C 0.049 3.951 17 C -0.148 4.148 18 C 0.100 3.900 19 C -0.142 4.142 20 C -0.157 4.157 21 C 0.046 3.954 22 O -0.350 6.350 23 C 0.041 3.959 24 C -0.068 4.068 25 C -0.193 4.193 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.987 -21.398 5.921 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.253 4.253 12 C -0.068 4.068 13 C -0.177 4.177 14 C -0.019 4.019 15 N -0.241 5.241 16 C -0.079 4.079 17 C -0.187 4.187 18 C 0.060 3.940 19 C -0.180 4.180 20 C -0.194 4.194 21 C -0.031 4.031 22 O -0.268 6.268 23 C -0.087 4.087 24 C -0.087 4.087 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.702 -20.488 6.161 24.386 hybrid contribution 0.207 -0.094 -0.362 0.428 sum 11.909 -20.582 5.799 24.476 Atomic orbital electron populations 1.70042 1.05951 1.27578 1.46398 1.25281 0.95833 0.98806 0.96638 0.85719 0.78969 0.80136 0.78659 1.19930 1.20288 1.19166 1.21328 0.91805 0.80857 1.52668 0.89083 1.83974 1.34358 1.11456 1.78509 1.19384 0.90317 0.88006 0.92151 1.21155 0.93776 0.98899 1.11514 1.20551 0.98278 0.91560 0.96461 1.19053 0.93065 0.93893 1.11736 1.20976 0.98428 0.94662 0.87836 1.63696 1.08601 1.39462 1.12387 1.22841 0.92186 0.94553 0.98317 1.23049 0.94872 0.98559 1.02218 1.22313 0.93706 0.91370 0.86655 1.23021 0.97871 0.95979 1.01128 1.23312 0.98621 1.00085 0.97405 1.23500 0.95384 0.90015 0.94176 1.88451 1.70322 1.35005 1.33046 1.23238 0.97818 0.92510 0.95085 1.20470 0.92973 0.96452 0.98812 1.20151 0.99397 0.90354 1.11368 0.92093 0.85645 0.87573 0.91043 0.94945 0.90356 0.92188 0.90161 0.90707 0.90248 0.89818 0.90256 0.90048 0.89722 0.92272 0.92912 0.89845 0.87609 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.78 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 8 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 9 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 10 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 11 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 12 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 13 C -0.18 -3.12 5.11 -104.58 -0.53 -3.66 16 14 C 0.11 1.54 4.75 -4.98 -0.02 1.52 16 15 N -0.52 -7.35 5.15 -233.03 -1.20 -8.55 16 16 C 0.05 0.65 6.29 -2.69 -0.02 0.64 16 17 C -0.15 -1.57 6.02 -25.38 -0.15 -1.72 16 18 C 0.10 1.04 1.09 -89.43 -0.10 0.94 16 19 C -0.14 -1.03 6.09 -25.18 -0.15 -1.18 16 20 C -0.16 -1.01 7.16 -24.30 -0.17 -1.19 16 21 C 0.05 0.38 7.79 38.23 0.30 0.68 16 22 O -0.35 -4.31 10.85 -35.23 -0.38 -4.69 16 23 C 0.04 0.47 5.88 -2.76 -0.02 0.46 16 24 C -0.07 -1.25 8.73 -39.61 -0.35 -1.59 16 25 C -0.19 -4.20 9.99 -39.40 -0.39 -4.59 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 28 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 30 H 0.03 0.42 7.90 -51.93 -0.41 0.01 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.79 5.50 -51.93 -0.29 0.51 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 35 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.08 0.53 7.53 -51.93 -0.39 0.14 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.51 7.34 -51.92 -0.38 0.13 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.11 1.63 6.93 -52.48 -0.36 1.27 16 44 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -32.16 351.09 -9.56 -41.72 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.58 Total: 3.54 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.42 Total: -22.97 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: -0.44 Total: -33.57 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.38 Total: -9.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.16 -9.56 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.222 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds