Wall clock time and date at job start Tue Mar 31 2020 08:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46665 * 269.99275 * 3 2 1 5 5 H 1.48494 * 109.47527 * 29.99745 * 3 2 1 6 6 H 1.48506 * 109.46835 * 149.99924 * 3 2 1 7 7 C 1.38657 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99393 * 180.02562 * 7 2 1 9 9 O 1.34824 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99743 * 185.05393 * 9 7 2 11 11 C 1.38878 * 120.06932 * 354.46353 * 10 9 7 12 12 C 1.38099 * 119.93230 * 179.97438 * 11 10 9 13 13 C 1.38304 * 120.06790 * 0.02686 * 12 11 10 14 14 C 1.50695 * 119.93079 * 179.97438 * 13 12 11 15 15 N 1.46896 * 109.47198 * 90.00106 * 14 13 12 16 16 C 1.47525 * 111.00519 * 69.87215 * 15 14 13 17 17 C 1.54506 * 107.26997 * 123.21805 * 16 15 14 18 18 C 1.54065 * 102.92512 * 21.32516 * 17 16 15 19 19 C 1.53379 * 110.76180 * 207.00663 * 18 17 16 20 20 C 1.55555 * 101.88893 * 216.16484 * 19 18 17 21 21 C 1.55037 * 101.06605 * 33.27360 * 20 19 18 22 22 O 1.42063 * 111.65009 * 85.53698 * 18 17 16 23 23 C 1.48043 * 111.00063 * 190.78173 * 15 14 13 24 24 C 1.38304 * 120.13455 * 0.22897 * 13 12 11 25 25 C 1.38094 * 120.07249 * 359.49037 * 24 13 12 26 26 H 0.97005 * 120.00271 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.03417 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.96741 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.47560 * 329.99589 * 14 13 12 30 30 H 1.09006 * 109.46910 * 209.99595 * 14 13 12 31 31 H 1.08998 * 109.88092 * 242.63666 * 16 15 14 32 32 H 1.08997 * 109.87703 * 3.64688 * 16 15 14 33 33 H 1.09002 * 110.71836 * 139.68400 * 17 16 15 34 34 H 1.09001 * 110.72310 * 262.96146 * 17 16 15 35 35 H 1.08997 * 110.94750 * 334.31422 * 19 18 17 36 36 H 1.09000 * 110.94448 * 98.01791 * 19 18 17 37 37 H 1.09005 * 111.10406 * 275.32438 * 20 19 18 38 38 H 1.09001 * 111.10126 * 151.22916 * 20 19 18 39 39 H 1.09000 * 110.30522 * 205.21413 * 21 20 19 40 40 H 1.09006 * 110.30058 * 83.06625 * 21 20 19 41 41 H 1.09008 * 110.38967 * 333.50249 * 23 15 14 42 42 H 1.09000 * 110.39266 * 95.87679 * 23 15 14 43 43 H 1.08006 * 119.96371 * 179.72561 * 24 13 12 44 44 H 1.08003 * 120.03738 * 180.25859 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0462 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4401 0.7001 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1076 11 6 3.4570 -3.4395 0.0951 12 6 4.2022 -4.5970 0.2048 13 6 3.5684 -5.8202 0.3264 14 6 4.3845 -7.0814 0.4453 15 7 4.6559 -7.3574 1.8624 16 6 3.4252 -7.7641 2.5670 17 6 3.6944 -9.1482 3.1986 18 6 5.2324 -9.2001 3.2724 19 6 5.7303 -10.6501 3.2266 20 6 6.9506 -10.6004 4.1900 21 6 6.4735 -9.5449 5.2205 22 8 5.7214 -8.5842 4.4555 23 6 5.6625 -8.4328 2.0102 24 6 2.1871 -5.8888 0.3339 25 6 1.4363 -4.7344 0.2304 26 1 -0.4851 0.8401 -0.0004 27 1 3.9525 -2.4847 -0.0003 28 1 5.2810 -4.5471 0.1947 29 1 5.3272 -6.9559 -0.0874 30 1 3.8308 -7.9147 0.0125 31 1 3.1883 -7.0405 3.3469 32 1 2.5983 -7.8311 1.8600 33 1 3.2581 -9.2086 4.1956 34 1 3.3118 -9.9445 2.5601 35 1 4.9685 -11.3356 3.5978 36 1 6.0409 -10.9238 2.2183 37 1 7.8477 -10.2638 3.6702 38 1 7.1146 -11.5673 4.6658 39 1 7.3297 -9.0645 5.6939 40 1 5.8369 -10.0113 5.9725 41 1 5.6454 -9.0910 1.1415 42 1 6.6566 -8.0066 2.1452 43 1 1.6950 -6.8460 0.4246 44 1 0.3577 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:19 Heat of formation + Delta-G solvation = -58.851812 kcal Electronic energy + Delta-G solvation = -24359.161002 eV Core-core repulsion = 20855.226895 eV Total energy + Delta-G solvation = -3503.934107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42895 -40.72476 -38.94137 -37.59841 -34.37771 -33.41658 -32.84511 -31.80618 -30.49946 -29.93844 -27.60843 -26.39077 -25.17419 -23.64901 -22.86405 -22.37663 -21.55657 -20.92398 -19.84618 -18.81453 -17.50957 -17.21358 -16.56697 -16.34480 -16.25818 -16.07413 -15.84388 -15.46190 -15.26493 -15.10442 -14.58102 -14.29117 -14.17910 -14.13719 -13.72623 -13.55489 -13.48224 -13.07988 -12.87235 -12.80674 -12.61780 -12.42648 -12.41638 -12.14793 -12.06381 -11.92220 -11.73727 -11.61652 -11.52504 -11.15560 -10.78898 -10.41683 -9.75818 -9.17335 -8.87950 -8.47149 -6.15131 0.61198 0.69294 1.34375 1.43805 1.52226 2.17945 2.74450 2.86931 3.07965 3.33865 3.49400 3.53559 3.64569 3.87201 3.88524 4.05422 4.06447 4.13279 4.20306 4.23909 4.37798 4.42935 4.58601 4.61950 4.68706 4.69544 4.78222 4.81681 4.82539 4.85576 4.92428 4.94961 5.03495 5.08842 5.12725 5.15437 5.21003 5.28953 5.30891 5.56991 5.72421 5.81738 6.03261 6.09650 6.17349 6.24769 6.31312 6.97654 7.78825 8.76264 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.002653 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.018158 B =10550.861779 C =10853.434039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.053 4.053 13 C -0.152 4.152 14 C 0.111 3.889 15 N -0.542 5.542 16 C 0.045 3.955 17 C -0.142 4.142 18 C 0.095 3.905 19 C -0.136 4.136 20 C -0.149 4.149 21 C 0.036 3.964 22 O -0.387 6.387 23 C 0.042 3.958 24 C -0.059 4.059 25 C -0.204 4.204 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.144 0.856 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.535 -24.535 5.898 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.016 4.016 15 N -0.266 5.266 16 C -0.082 4.082 17 C -0.180 4.180 18 C 0.055 3.945 19 C -0.174 4.174 20 C -0.187 4.187 21 C -0.040 4.040 22 O -0.307 6.307 23 C -0.085 4.085 24 C -0.078 4.078 25 C -0.223 4.223 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.162 0.838 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.287 -23.690 6.144 28.339 hybrid contribution -0.462 0.551 -0.279 0.771 sum 13.825 -23.140 5.866 27.586 Atomic orbital electron populations 1.70185 1.08001 1.28777 1.49019 1.26594 0.96877 1.02719 0.95884 0.84588 0.77747 0.74553 0.79322 1.18614 1.19482 1.17857 1.21810 0.92463 0.81527 1.53175 0.88312 1.83936 1.35913 1.12571 1.81555 1.19928 0.91559 0.87992 0.94264 1.21242 0.93149 0.99941 1.11948 1.20888 0.99587 0.91022 0.95642 1.19611 0.93299 0.95128 1.07279 1.20988 0.98866 0.93129 0.88579 1.63521 1.09410 1.41672 1.11999 1.22784 0.92161 0.95584 0.97698 1.23035 0.95421 0.97346 1.02241 1.22430 0.93342 0.93056 0.85710 1.23022 0.98271 0.93816 1.02269 1.23300 0.98326 1.00353 0.96681 1.23700 0.95394 0.90208 0.94655 1.88414 1.70995 1.37131 1.34110 1.23292 0.96422 0.92133 0.96644 1.20868 0.93341 0.96694 0.96858 1.20425 0.99854 0.90583 1.11479 0.91836 0.86591 0.84843 0.89381 0.92551 0.93546 0.91895 0.90538 0.88302 0.89123 0.88282 0.90085 0.87939 0.89468 0.91663 0.90439 0.90589 0.83836 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.91 13.67 21.61 0.30 -57.62 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 44.18 29.55 68.60 2.03 46.21 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.41 -24.95 9.49 67.92 0.64 -24.30 16 8 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 9 O -0.23 -14.53 9.76 -22.73 -0.22 -14.76 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 C -0.24 -11.25 9.17 22.39 0.21 -11.04 16 12 C -0.05 -1.97 9.69 22.25 0.22 -1.76 16 13 C -0.15 -5.01 5.11 -19.83 -0.10 -5.11 16 14 C 0.11 2.72 4.75 85.56 0.41 3.13 16 15 N -0.54 -13.79 5.15 -891.17 -4.59 -18.38 16 16 C 0.05 1.13 6.29 86.70 0.55 1.67 16 17 C -0.14 -2.60 6.02 31.47 0.19 -2.41 16 18 C 0.09 1.69 1.09 -10.02 -0.01 1.68 16 19 C -0.14 -1.42 6.09 31.60 0.19 -1.22 16 20 C -0.15 -1.41 7.16 32.17 0.23 -1.18 16 21 C 0.04 0.53 7.79 72.68 0.57 1.10 16 22 O -0.39 -8.94 10.85 -148.97 -1.62 -10.56 16 23 C 0.04 0.82 5.88 86.37 0.51 1.32 16 24 C -0.06 -2.06 8.73 22.25 0.19 -1.87 16 25 C -0.20 -9.05 9.99 22.39 0.22 -8.82 16 26 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 27 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 28 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 29 H 0.09 1.92 8.01 -2.39 -0.02 1.90 16 30 H 0.06 1.16 7.90 -2.38 -0.02 1.14 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.48 5.50 -2.39 -0.01 1.46 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.34 8.01 -2.39 -0.02 1.32 16 35 H 0.09 0.77 7.91 -2.39 -0.02 0.75 16 36 H 0.10 0.75 7.53 -2.39 -0.02 0.74 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.08 1.12 7.34 -2.38 -0.02 1.10 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.14 3.91 6.93 -2.91 -0.02 3.89 16 44 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -75.60 351.09 1.51 -74.09 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.99 Total: 24.72 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 4.62 Total: -43.70 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -4.30 Total: -76.00 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.84 Total: -25.31 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.60 1.51 -74.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.237 kcal (2) G-P(sol) polarization free energy of solvation -75.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds