Wall clock time and date at job start Tue Mar 31 2020 08:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48504 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47363 * 299.99689 * 3 2 1 6 6 H 1.48506 * 109.47538 * 60.00164 * 3 2 1 7 7 C 1.38648 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00458 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00211 * 185.05956 * 9 7 2 11 11 C 1.38885 * 120.06691 * 354.46297 * 10 9 7 12 12 C 1.38095 * 119.92704 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.07443 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93477 * 179.97438 * 13 12 11 15 15 N 1.46894 * 109.47344 * 89.99710 * 14 13 12 16 16 C 1.47000 * 111.00037 * 66.04480 * 15 14 13 17 17 C 1.52999 * 109.53103 * 183.20620 * 16 15 14 18 18 C 1.53097 * 109.50109 * 299.00225 * 17 16 15 19 19 C 1.53281 * 109.08610 * 59.43354 * 18 17 16 20 20 C 1.46407 * 111.00405 * 190.04952 * 15 14 13 21 21 C 1.53568 * 113.69878 * 310.18811 * 20 15 14 22 22 O 1.44259 * 85.37527 * 91.95685 * 21 20 15 23 23 C 1.44264 * 93.41561 * 23.86190 * 22 21 20 24 24 C 1.38299 * 120.13428 * 0.24778 * 13 12 11 25 25 C 1.38101 * 120.06980 * 359.45413 * 24 13 12 26 26 H 0.97003 * 119.99392 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.03666 * 0.02562 * 11 10 9 28 28 H 1.08006 * 119.96597 * 179.97438 * 12 11 10 29 29 H 1.09006 * 109.46666 * 330.00024 * 14 13 12 30 30 H 1.09000 * 109.47052 * 210.00023 * 14 13 12 31 31 H 1.08999 * 109.46001 * 63.18950 * 16 15 14 32 32 H 1.08993 * 109.45260 * 303.22018 * 16 15 14 33 33 H 1.09003 * 109.46483 * 178.99964 * 17 16 15 34 34 H 1.08995 * 109.46158 * 59.01127 * 17 16 15 35 35 H 1.08993 * 109.54123 * 299.54919 * 18 17 16 36 36 H 1.09005 * 109.53499 * 179.30847 * 18 17 16 37 37 H 1.08998 * 109.53419 * 64.49172 * 19 18 17 38 38 H 1.08994 * 109.54158 * 184.73398 * 19 18 17 39 39 H 1.08999 * 113.88445 * 206.06723 * 21 20 15 40 40 H 1.08994 * 113.89320 * 337.84236 * 21 20 15 41 41 H 1.09001 * 113.88837 * 222.03213 * 23 22 21 42 42 H 1.08993 * 113.89127 * 90.24598 * 23 22 21 43 43 H 1.08004 * 119.96428 * 179.70382 * 24 13 12 44 44 H 1.08003 * 120.03476 * 180.27029 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0699 -3.5045 0.1087 11 6 3.4572 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2039 13 6 3.5686 -5.8203 0.3255 14 6 4.3848 -7.0816 0.4433 15 7 4.6573 -7.3581 1.8600 16 6 3.4172 -7.6752 2.5829 17 6 3.7280 -7.8784 4.0671 18 6 4.7013 -9.0488 4.2299 19 6 5.9898 -8.7402 3.4591 20 6 5.6400 -8.4336 2.0053 21 6 5.3141 -9.6837 1.1751 22 8 6.1293 -9.0744 0.1527 23 6 6.8687 -8.2740 1.0981 24 6 2.1873 -5.8889 0.3336 25 6 1.4365 -4.7343 0.2315 26 1 -0.4849 0.8401 0.0004 27 1 3.9526 -2.4846 -0.0002 28 1 5.2811 -4.5472 0.1930 29 1 5.3271 -6.9557 -0.0901 30 1 3.8308 -7.9146 0.0105 31 1 2.9821 -8.5875 2.1747 32 1 2.7104 -6.8534 2.4690 33 1 2.8052 -8.0960 4.6050 34 1 4.1789 -6.9721 4.4711 35 1 4.2484 -9.9575 3.8336 36 1 4.9327 -9.1863 5.2862 37 1 6.4833 -7.8767 3.9051 38 1 6.6546 -9.6029 3.4999 39 1 5.7315 -10.6048 1.5818 40 1 4.2617 -9.7728 0.9057 41 1 7.0435 -7.2500 0.7680 42 1 7.7661 -8.7597 1.4811 43 1 1.6953 -6.8461 0.4240 44 1 0.3579 -4.7882 0.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137119248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:39 Heat of formation + Delta-G solvation = -27.498974 kcal Electronic energy + Delta-G solvation = -25092.448519 eV Core-core repulsion = 21589.873973 eV Total energy + Delta-G solvation = -3502.574546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45915 -40.74782 -38.70025 -37.71831 -34.88140 -34.14776 -31.97099 -31.71407 -30.93149 -27.87066 -27.58005 -27.00713 -25.79195 -24.22434 -23.50996 -22.08934 -21.72294 -19.85670 -19.49722 -18.83341 -17.76685 -17.24565 -16.64128 -16.48459 -16.30271 -16.09837 -15.71539 -15.51690 -15.20962 -15.13232 -14.78380 -14.51803 -14.35473 -14.24680 -14.05144 -13.71130 -13.57913 -13.13211 -12.95374 -12.72938 -12.46949 -12.41307 -12.32169 -12.14843 -12.08346 -11.88123 -11.50686 -11.30161 -11.17294 -10.99469 -10.79543 -10.63076 -9.77114 -9.25882 -8.88007 -8.47369 -6.15383 0.58931 0.66765 1.35038 1.43115 1.53413 2.17692 2.65318 2.72160 2.94047 3.18129 3.37691 3.51101 3.82570 3.96089 4.02052 4.06700 4.11133 4.18335 4.27213 4.34379 4.39019 4.42224 4.47909 4.58517 4.61982 4.68414 4.76670 4.79952 4.84488 4.92496 5.02823 5.07231 5.09497 5.10904 5.16255 5.19095 5.23839 5.28848 5.32325 5.47992 5.55885 5.71315 5.80977 6.02971 6.08737 6.18590 6.25132 6.97599 7.78337 8.76159 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.003151 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.656532 B = 8883.965421 C = 9049.591498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.241 4.241 12 C -0.050 4.050 13 C -0.153 4.153 14 C 0.122 3.878 15 N -0.514 5.514 16 C 0.051 3.949 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.104 4.104 20 C 0.053 3.947 21 C 0.006 3.994 22 O -0.404 6.404 23 C 0.039 3.961 24 C -0.059 4.059 25 C -0.203 4.203 26 H 0.273 0.727 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.924 -20.142 7.564 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.260 4.260 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.005 4.005 15 N -0.237 5.237 16 C -0.076 4.076 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.038 4.038 21 C -0.072 4.072 22 O -0.323 6.323 23 C -0.038 4.038 24 C -0.077 4.077 25 C -0.222 4.222 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.157 0.843 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.723 -19.567 7.470 25.040 hybrid contribution -0.635 0.532 -0.472 0.953 sum 13.089 -19.035 6.999 24.138 Atomic orbital electron populations 1.70195 1.08013 1.28712 1.49012 1.26584 0.96859 1.02707 0.95872 0.84532 0.78235 0.74845 0.78604 1.17516 1.19291 1.19265 1.21857 0.92498 0.81461 1.53090 0.88190 1.83940 1.35953 1.12601 1.81444 1.19906 0.91547 0.87931 0.94132 1.21232 0.93088 0.99908 1.11818 1.20848 0.99559 0.90858 0.95605 1.19579 0.93222 0.94949 1.07640 1.20749 0.98758 0.92496 0.88480 1.61840 1.11297 1.39275 1.11275 1.22171 0.91046 0.99575 0.94778 1.21574 1.00214 0.99314 0.94413 1.21566 0.95118 0.97566 1.01011 1.21586 0.98206 1.02515 0.91853 1.23691 0.93430 0.89377 0.97335 1.24692 0.96633 0.98073 0.87840 1.89699 1.53208 1.60528 1.28842 1.24304 0.95295 0.97067 0.87100 1.20803 0.93330 0.96596 0.97004 1.20400 0.99826 0.90518 1.11441 0.91844 0.86461 0.84831 0.89624 0.94149 0.94225 0.91665 0.90701 0.92328 0.91461 0.90308 0.91082 0.88892 0.87782 0.90237 0.89164 0.87193 0.84330 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.67 21.61 0.30 -56.90 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 8 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.29 9.76 -22.77 -0.22 -14.51 16 10 C 0.12 5.88 6.65 22.58 0.15 6.03 16 11 C -0.24 -10.85 9.17 22.39 0.21 -10.65 16 12 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 13 C -0.15 -5.01 4.88 -19.83 -0.10 -5.11 16 14 C 0.12 3.17 3.78 85.56 0.32 3.50 16 15 N -0.51 -11.72 4.65 -895.05 -4.17 -15.89 16 16 C 0.05 1.13 5.00 86.28 0.43 1.56 16 17 C -0.12 -2.10 6.04 30.63 0.18 -1.91 16 18 C -0.12 -1.47 5.93 30.72 0.18 -1.29 16 19 C -0.10 -1.34 5.23 30.57 0.16 -1.18 16 20 C 0.05 0.91 1.02 3.88 0.00 0.91 16 21 C 0.01 0.10 7.47 72.14 0.54 0.64 16 22 O -0.40 -8.73 10.84 -148.98 -1.61 -10.35 16 23 C 0.04 0.66 7.75 72.14 0.56 1.22 16 24 C -0.06 -2.04 7.91 22.25 0.18 -1.86 16 25 C -0.20 -8.83 9.99 22.39 0.22 -8.61 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 28 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.09 2.24 5.64 -2.38 -0.01 2.22 16 30 H 0.04 1.04 6.95 -2.39 -0.02 1.02 16 31 H 0.04 0.79 7.23 -2.39 -0.02 0.77 16 32 H 0.06 1.76 5.96 -2.39 -0.01 1.74 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 39 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 40 H 0.08 1.41 6.60 -2.39 -0.02 1.40 16 41 H 0.09 1.66 7.22 -2.39 -0.02 1.65 16 42 H 0.11 1.28 8.09 -2.39 -0.02 1.26 16 43 H 0.14 3.89 8.01 -2.91 -0.02 3.87 16 44 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -71.37 343.01 1.69 -69.68 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 1.00 Total: 25.54 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 4.37 Total: -43.07 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -3.87 Total: -72.78 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.84 Total: -24.86 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.37 1.69 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137119248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.179 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds