Wall clock time and date at job start Tue Mar 31 2020 08:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47145 * 174.63685 * 3 2 1 5 5 H 1.48498 * 109.47258 * 294.63658 * 3 2 1 6 6 H 1.48503 * 109.46932 * 54.64040 * 3 2 1 7 7 C 1.37884 * 120.00192 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.84986 * 164.57320 * 7 2 1 9 9 C 1.53234 * 108.53815 * 231.32424 * 8 7 2 10 10 C 1.52964 * 109.40126 * 305.37425 * 9 8 7 11 11 H 1.09002 * 109.41735 * 303.56026 * 10 9 8 12 12 N 1.46503 * 109.41081 * 183.70168 * 10 9 8 13 13 C 1.34775 * 119.99810 * 155.00575 * 12 10 9 14 14 O 1.21284 * 119.99966 * 359.97438 * 13 12 10 15 15 C 1.50700 * 120.00023 * 180.02562 * 13 12 10 16 16 O 1.42900 * 109.47330 * 179.97438 * 15 13 12 17 17 C 1.42900 * 114.00198 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47232 * 180.02562 * 17 16 15 19 19 C 1.38229 * 120.00098 * 269.72783 * 18 17 16 20 20 C 1.38230 * 119.99965 * 180.36697 * 19 18 17 21 21 C 1.38227 * 120.00395 * 359.86444 * 20 19 18 22 22 C 1.38242 * 119.99927 * 0.08773 * 21 20 19 23 23 C 1.38233 * 119.99574 * 0.02562 * 22 21 20 24 24 C 1.52965 * 109.81881 * 63.59575 * 10 9 8 25 25 C 1.51271 * 120.84697 * 344.54892 * 7 2 1 26 26 H 0.96997 * 120.00342 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62717 * 111.61310 * 8 7 2 28 28 H 1.08997 * 109.62904 * 351.04227 * 8 7 2 29 29 H 1.08993 * 109.48630 * 185.40077 * 9 8 7 30 30 H 1.08997 * 109.49422 * 65.35599 * 9 8 7 31 31 H 0.96996 * 119.99758 * 334.99461 * 12 10 9 32 32 H 1.09005 * 109.47278 * 59.99170 * 15 13 12 33 33 H 1.09005 * 109.46776 * 299.99258 * 15 13 12 34 34 H 1.08999 * 109.46846 * 60.00242 * 17 16 15 35 35 H 1.09002 * 109.46887 * 299.99778 * 17 16 15 36 36 H 1.08004 * 120.00092 * 0.27567 * 19 18 17 37 37 H 1.08010 * 119.99814 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00515 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.00120 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99580 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.48062 * 56.38039 * 24 10 9 42 42 H 1.08998 * 109.48396 * 176.42010 * 24 10 9 43 43 H 1.09004 * 109.62496 * 248.38971 * 25 7 2 44 44 H 1.09001 * 109.62509 * 8.96456 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7038 1.3494 0.1309 5 1 1.9912 2.3382 -1.2726 6 1 1.7949 2.4515 1.1418 7 6 2.0045 -1.1941 -0.0005 8 6 3.4765 -1.2397 -0.3460 9 6 3.6904 -2.3042 -1.4272 10 6 3.1136 -3.6377 -0.9486 11 1 3.5735 -3.9114 0.0010 12 7 3.3959 -4.6754 -1.9435 13 6 3.4564 -5.9688 -1.5695 14 8 3.2776 -6.2736 -0.4092 15 6 3.7474 -7.0362 -2.5927 16 8 3.7596 -8.3156 -1.9562 17 6 4.0274 -9.4036 -2.8431 18 6 4.0157 -10.6969 -2.0696 19 6 5.1839 -11.1769 -1.5079 20 6 5.1746 -12.3670 -0.8048 21 6 3.9966 -13.0757 -0.6611 22 6 2.8280 -12.5952 -1.2219 23 6 2.8378 -11.4063 -1.9270 24 6 1.6008 -3.5110 -0.7613 25 6 1.3083 -2.4919 0.3449 26 1 -0.4850 0.8400 0.0004 27 1 4.0531 -1.4989 0.5420 28 1 3.7948 -0.2673 -0.7216 29 1 4.7572 -2.4179 -1.6196 30 1 3.1862 -1.9982 -2.3438 31 1 3.5391 -4.4316 -2.8713 32 1 4.7198 -6.8479 -3.0478 33 1 2.9764 -7.0208 -3.3631 34 1 5.0053 -9.2643 -3.3040 35 1 3.2618 -9.4373 -3.6182 36 1 6.1042 -10.6228 -1.6195 37 1 6.0876 -12.7423 -0.3663 38 1 3.9893 -14.0054 -0.1114 39 1 1.9077 -13.1491 -1.1100 40 1 1.9249 -11.0311 -2.3656 41 1 1.1458 -3.1762 -1.6936 42 1 1.1866 -4.4797 -0.4819 43 1 1.6842 -2.8669 1.2969 44 1 0.2335 -2.3239 0.4130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143218521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:43 Heat of formation + Delta-G solvation = -70.698280 kcal Electronic energy + Delta-G solvation = -23691.035271 eV Core-core repulsion = 20186.587463 eV Total energy + Delta-G solvation = -3504.447809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78155 -39.35417 -37.61948 -36.48477 -33.67943 -32.30100 -31.61872 -31.13174 -29.63066 -28.67260 -26.85244 -25.63776 -22.81949 -22.10480 -21.64026 -21.57807 -20.05058 -19.48390 -17.44639 -16.85610 -16.74009 -16.44543 -15.96638 -15.41038 -15.28382 -15.14394 -14.38369 -14.11453 -13.99814 -13.61887 -13.25656 -13.10036 -12.94164 -12.86958 -12.36056 -12.17155 -12.10047 -11.93549 -11.64567 -11.27206 -11.20054 -10.98655 -10.86590 -10.76225 -10.20532 -9.89770 -9.88582 -9.61214 -9.45779 -9.14040 -9.10255 -9.02947 -8.85591 -8.39875 -8.25274 -6.12800 -3.98189 1.01758 1.18274 2.92289 2.98688 3.25065 3.36014 3.38306 3.59092 4.13379 4.38233 4.55445 4.62667 4.77407 4.84967 4.93511 4.96628 5.04433 5.09130 5.13980 5.14840 5.29241 5.40839 5.69751 5.72266 5.80263 5.90715 6.18067 6.20405 6.26855 6.35353 6.50214 6.53600 6.70867 6.74409 6.79437 6.83106 6.88829 7.05340 7.13168 7.27758 7.40482 7.66436 7.76728 7.84543 7.92718 8.40571 8.59360 8.97561 9.54397 10.96971 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.002287 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.673811 B =12237.777228 C =12491.352640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.494 4.494 8 C -0.012 4.012 9 C -0.111 4.111 10 C 0.155 3.845 11 H 0.078 0.922 12 N -0.724 5.724 13 C 0.508 3.492 14 O -0.521 6.521 15 C 0.043 3.957 16 O -0.354 6.354 17 C 0.100 3.900 18 C -0.089 4.089 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.113 4.113 25 C 0.011 3.989 26 H 0.263 0.737 27 H 0.017 0.983 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.393 0.607 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.005 0.995 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 -20.688 -9.404 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.707 3.293 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.513 4.513 8 C -0.050 4.050 9 C -0.150 4.150 10 C 0.053 3.947 11 H 0.096 0.904 12 N -0.376 5.376 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.037 4.037 16 O -0.273 6.273 17 C 0.024 3.976 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.152 4.152 25 C -0.027 4.027 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.880 -20.824 -8.344 24.127 hybrid contribution 0.446 1.087 -0.832 1.439 sum 9.326 -19.737 -9.175 23.680 Atomic orbital electron populations 1.69916 1.06308 1.26876 1.48757 1.24828 0.94550 0.98575 0.94468 0.86777 0.81005 0.83808 0.77710 1.18612 1.21001 1.21171 1.20007 0.92319 0.92428 1.46525 1.19714 0.97288 0.94245 0.93769 1.21843 0.97206 0.95093 1.00842 1.21071 0.97384 0.85443 0.90799 0.90429 1.46302 1.72373 1.06141 1.12750 1.20111 0.77926 0.83388 0.89406 1.90737 1.47976 1.81643 1.19203 1.22283 1.01984 0.84411 0.95064 1.88129 1.92556 1.12784 1.33807 1.21376 1.00331 0.84461 0.91469 1.19563 0.94010 0.95151 1.00174 1.21078 0.97900 0.95885 0.96644 1.21148 0.98336 0.95402 0.99399 1.21206 0.92919 0.99906 0.99302 1.21159 0.98342 0.96474 0.98252 1.21096 0.97345 0.94741 0.98260 1.21938 0.93212 0.98611 1.01422 1.19368 0.99236 0.91992 0.92087 0.92659 0.96506 0.94557 0.94416 0.92467 0.77403 0.90547 0.90426 0.92272 0.92223 0.85898 0.85907 0.86037 0.85868 0.85834 0.93129 0.94788 0.97667 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 12.81 55.43 0.71 -24.56 16 2 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 3 Si 0.88 20.61 27.63 -169.99 -4.70 15.92 16 4 H -0.26 -5.89 6.14 56.52 0.35 -5.54 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -12.97 5.44 -98.92 -0.54 -13.51 16 8 C -0.01 -0.27 5.47 -27.49 -0.15 -0.42 16 9 C -0.11 -2.15 5.40 -26.63 -0.14 -2.29 16 10 C 0.16 3.08 2.35 -67.97 -0.16 2.92 16 11 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 12 N -0.72 -11.37 5.07 -53.84 -0.27 -11.64 16 13 C 0.51 8.48 7.87 -10.99 -0.09 8.39 16 14 O -0.52 -11.43 16.16 -14.35 -0.23 -11.66 16 15 C 0.04 0.50 6.42 36.01 0.23 0.73 16 16 O -0.35 -4.97 9.86 -55.14 -0.54 -5.51 16 17 C 0.10 0.99 6.06 36.01 0.22 1.21 16 18 C -0.09 -0.95 5.51 -104.63 -0.58 -1.53 16 19 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 23 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 24 C -0.11 -2.53 5.50 -26.63 -0.15 -2.68 16 25 C 0.01 0.29 5.99 -27.49 -0.16 0.12 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.81 5.02 -51.93 -0.26 0.55 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.39 4.71 8.60 -40.82 -0.35 4.36 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.06 1.60 7.11 -51.93 -0.37 1.24 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -33.23 361.08 -10.07 -43.29 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.90 Total: 0.87 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.57 Total: -12.15 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.44 Total: -36.21 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.78 Total: -17.17 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.70 Total: 15.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.23 -10.07 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143218521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.403 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds