Wall clock time and date at job start Tue Mar 31 2020 08:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47145 * 174.63685 * 3 2 1 5 5 H 1.48498 * 109.47258 * 294.63658 * 3 2 1 6 6 H 1.48503 * 109.46932 * 54.64040 * 3 2 1 7 7 C 1.37884 * 120.00192 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.84986 * 164.57320 * 7 2 1 9 9 C 1.53234 * 108.53815 * 231.32424 * 8 7 2 10 10 C 1.52964 * 109.40126 * 305.37425 * 9 8 7 11 11 H 1.09002 * 109.41735 * 303.56026 * 10 9 8 12 12 N 1.46503 * 109.41081 * 183.70168 * 10 9 8 13 13 C 1.34775 * 119.99810 * 155.00575 * 12 10 9 14 14 O 1.21284 * 119.99966 * 359.97438 * 13 12 10 15 15 C 1.50700 * 120.00023 * 180.02562 * 13 12 10 16 16 O 1.42900 * 109.47330 * 179.97438 * 15 13 12 17 17 C 1.42900 * 114.00198 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47232 * 180.02562 * 17 16 15 19 19 C 1.38229 * 120.00098 * 269.72783 * 18 17 16 20 20 C 1.38230 * 119.99965 * 180.36697 * 19 18 17 21 21 C 1.38227 * 120.00395 * 359.86444 * 20 19 18 22 22 C 1.38242 * 119.99927 * 0.08773 * 21 20 19 23 23 C 1.38233 * 119.99574 * 0.02562 * 22 21 20 24 24 C 1.52965 * 109.81881 * 63.59575 * 10 9 8 25 25 C 1.51271 * 120.84697 * 344.54892 * 7 2 1 26 26 H 0.96997 * 120.00342 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62717 * 111.61310 * 8 7 2 28 28 H 1.08997 * 109.62904 * 351.04227 * 8 7 2 29 29 H 1.08993 * 109.48630 * 185.40077 * 9 8 7 30 30 H 1.08997 * 109.49422 * 65.35599 * 9 8 7 31 31 H 0.96996 * 119.99758 * 334.99461 * 12 10 9 32 32 H 1.09005 * 109.47278 * 59.99170 * 15 13 12 33 33 H 1.09005 * 109.46776 * 299.99258 * 15 13 12 34 34 H 1.08999 * 109.46846 * 60.00242 * 17 16 15 35 35 H 1.09002 * 109.46887 * 299.99778 * 17 16 15 36 36 H 1.08004 * 120.00092 * 0.27567 * 19 18 17 37 37 H 1.08010 * 119.99814 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00515 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.00120 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99580 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.48062 * 56.38039 * 24 10 9 42 42 H 1.08998 * 109.48396 * 176.42010 * 24 10 9 43 43 H 1.09004 * 109.62496 * 248.38971 * 25 7 2 44 44 H 1.09001 * 109.62509 * 8.96456 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7038 1.3494 0.1309 5 1 1.9912 2.3382 -1.2726 6 1 1.7949 2.4515 1.1418 7 6 2.0045 -1.1941 -0.0005 8 6 3.4765 -1.2397 -0.3460 9 6 3.6904 -2.3042 -1.4272 10 6 3.1136 -3.6377 -0.9486 11 1 3.5735 -3.9114 0.0010 12 7 3.3959 -4.6754 -1.9435 13 6 3.4564 -5.9688 -1.5695 14 8 3.2776 -6.2736 -0.4092 15 6 3.7474 -7.0362 -2.5927 16 8 3.7596 -8.3156 -1.9562 17 6 4.0274 -9.4036 -2.8431 18 6 4.0157 -10.6969 -2.0696 19 6 5.1839 -11.1769 -1.5079 20 6 5.1746 -12.3670 -0.8048 21 6 3.9966 -13.0757 -0.6611 22 6 2.8280 -12.5952 -1.2219 23 6 2.8378 -11.4063 -1.9270 24 6 1.6008 -3.5110 -0.7613 25 6 1.3083 -2.4919 0.3449 26 1 -0.4850 0.8400 0.0004 27 1 4.0531 -1.4989 0.5420 28 1 3.7948 -0.2673 -0.7216 29 1 4.7572 -2.4179 -1.6196 30 1 3.1862 -1.9982 -2.3438 31 1 3.5391 -4.4316 -2.8713 32 1 4.7198 -6.8479 -3.0478 33 1 2.9764 -7.0208 -3.3631 34 1 5.0053 -9.2643 -3.3040 35 1 3.2618 -9.4373 -3.6182 36 1 6.1042 -10.6228 -1.6195 37 1 6.0876 -12.7423 -0.3663 38 1 3.9893 -14.0054 -0.1114 39 1 1.9077 -13.1491 -1.1100 40 1 1.9249 -11.0311 -2.3656 41 1 1.1458 -3.1762 -1.6936 42 1 1.1866 -4.4797 -0.4819 43 1 1.6842 -2.8669 1.2969 44 1 0.2335 -2.3239 0.4130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143218521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:43 Heat of formation + Delta-G solvation = -90.976323 kcal Electronic energy + Delta-G solvation = -23691.914593 eV Core-core repulsion = 20186.587463 eV Total energy + Delta-G solvation = -3505.327130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97894 -40.21124 -38.77938 -37.95422 -35.37431 -33.51122 -32.94087 -31.79747 -31.47236 -30.04543 -28.21301 -26.51041 -23.90438 -23.49200 -23.44843 -22.27784 -21.45095 -21.21880 -18.55681 -18.06543 -17.74898 -17.47104 -17.28143 -16.62930 -16.32976 -16.15673 -16.05549 -15.31024 -15.16658 -14.94293 -14.58222 -14.27609 -14.19289 -13.98046 -13.90379 -13.65885 -13.44309 -13.04458 -12.94033 -12.79809 -12.68647 -12.61299 -11.92548 -11.89662 -11.86235 -11.80296 -11.38086 -11.08747 -10.80888 -10.69828 -10.69318 -10.39517 -9.89176 -9.82855 -9.76788 -8.18561 -6.08319 0.31694 0.49387 1.39794 1.45877 1.55661 1.65120 1.93576 2.42835 2.76898 3.08552 3.28973 3.76269 3.91766 3.96175 4.05658 4.14682 4.21890 4.23854 4.28972 4.31127 4.40586 4.44015 4.50128 4.64174 4.72132 4.76721 4.88755 5.00080 5.04777 5.07463 5.14657 5.16570 5.23013 5.27539 5.53638 5.55168 5.58503 5.59990 5.65607 5.68525 5.73746 5.83507 6.06111 6.11462 6.35058 6.69015 6.94568 7.35358 7.47011 8.93439 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.002287 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.673811 B =12237.777228 C =12491.352640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.023 3.977 3 Si 0.941 3.059 4 H -0.242 1.242 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.506 4.506 8 C -0.017 4.017 9 C -0.102 4.102 10 C 0.167 3.833 11 H 0.051 0.949 12 N -0.708 5.708 13 C 0.502 3.498 14 O -0.582 6.582 15 C 0.051 3.949 16 O -0.395 6.395 17 C 0.099 3.901 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.101 4.101 25 C 0.007 3.993 26 H 0.263 0.737 27 H 0.014 0.986 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.417 0.583 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.049 0.951 42 H 0.022 0.978 43 H -0.010 1.010 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -21.214 -11.619 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.165 1.165 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.525 4.525 8 C -0.055 4.055 9 C -0.140 4.140 10 C 0.062 3.938 11 H 0.069 0.931 12 N -0.361 5.361 13 C 0.289 3.711 14 O -0.462 6.462 15 C -0.028 4.028 16 O -0.314 6.314 17 C 0.023 3.977 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.031 4.031 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.254 0.746 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.008 0.992 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.312 -21.359 -10.620 26.399 hybrid contribution -0.350 1.132 -0.077 1.188 sum 10.962 -20.226 -10.697 25.371 Atomic orbital electron populations 1.70056 1.08065 1.27607 1.50835 1.25682 0.95231 1.02118 0.94545 0.85790 0.80667 0.79403 0.77505 1.16525 1.20352 1.21850 1.20555 0.94319 0.92145 1.45449 1.19762 0.94638 0.96114 0.95009 1.21704 0.99587 0.93066 0.99632 1.20626 0.94773 0.87214 0.91161 0.93052 1.45972 1.71682 1.05326 1.13157 1.21110 0.76167 0.84245 0.89624 1.90716 1.50679 1.82568 1.22189 1.22334 1.05137 0.82109 0.93245 1.88074 1.93091 1.14137 1.36109 1.21562 1.02150 0.82860 0.91091 1.19852 0.94442 0.95884 1.00986 1.21343 0.98252 0.96544 0.96980 1.21483 0.99385 0.95187 0.99089 1.21556 0.92664 1.00709 0.99078 1.21474 0.99420 0.96410 0.97949 1.21340 0.97651 0.95424 0.98933 1.21740 0.95732 0.96701 0.99790 1.19325 0.97174 0.93775 0.92838 0.92774 0.96709 0.93621 0.90728 0.91506 0.74633 0.86552 0.87186 0.90049 0.90440 0.84951 0.83940 0.83802 0.84148 0.85307 0.93174 0.95962 0.99204 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 12.81 21.45 0.27 -54.40 16 2 C 0.02 1.26 5.43 84.66 0.46 1.72 16 3 Si 0.94 42.05 27.63 68.60 1.90 43.94 16 4 H -0.24 -9.93 6.14 99.48 0.61 -9.32 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.51 -26.72 5.44 -16.17 -0.09 -26.81 16 8 C -0.02 -0.75 5.47 30.11 0.16 -0.59 16 9 C -0.10 -3.62 5.40 30.66 0.17 -3.46 16 10 C 0.17 6.42 2.35 44.97 0.11 6.53 16 11 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 12 N -0.71 -20.54 5.07 -442.64 -2.25 -22.78 16 13 C 0.50 15.96 7.87 87.66 0.69 16.65 16 14 O -0.58 -25.86 16.16 15.99 0.26 -25.60 16 15 C 0.05 1.03 6.42 71.24 0.46 1.49 16 16 O -0.39 -10.38 9.86 -129.94 -1.28 -11.66 16 17 C 0.10 1.74 6.06 71.24 0.43 2.18 16 18 C -0.11 -2.29 5.51 -19.87 -0.11 -2.40 16 19 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 20 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 21 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 23 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 24 C -0.10 -4.59 5.50 30.66 0.17 -4.42 16 25 C 0.01 0.37 5.99 30.11 0.18 0.55 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.05 1.90 5.02 -2.39 -0.01 1.89 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 31 H 0.42 8.30 8.60 -92.71 -0.80 7.50 16 32 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.02 8.08 -2.39 -0.02 1.01 16 35 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 44 H 0.02 1.37 7.11 -2.39 -0.02 1.36 16 Total: -1.00 -76.01 361.08 2.73 -73.28 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.10 Total: 15.58 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.73 Total: -18.37 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.97 Total: -77.18 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.02 Total: -37.26 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.90 Total: 43.94 kcal Total: -76.01 2.73 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143218521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.696 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds