Wall clock time and date at job start Tue Mar 31 2020 08:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99419 * 2 1 4 4 H 1.48500 * 109.46616 * 239.99545 * 3 2 1 5 5 H 1.48491 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47099 * 120.00025 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.46856 * 119.99945 * 179.97438 * 15 14 13 18 18 C 1.40037 * 120.11411 * 359.73278 * 17 15 14 19 19 C 1.37127 * 119.88311 * 179.74081 * 18 17 15 20 20 C 1.39083 * 120.11290 * 0.53005 * 19 18 17 21 21 O 1.35660 * 119.88159 * 179.70251 * 20 19 18 22 22 C 1.39083 * 120.23071 * 359.71919 * 20 19 18 23 23 C 1.37117 * 120.11581 * 0.02562 * 22 20 19 24 24 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 25 25 C 1.52996 * 109.47260 * 299.99693 * 24 12 11 26 26 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 28 28 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 29 29 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 30 30 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 31 31 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 32 32 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 33 33 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.07997 * 120.06078 * 359.96691 * 18 17 15 37 37 H 1.07995 * 119.94075 * 180.25108 * 19 18 17 38 38 H 0.96703 * 113.99838 * 270.01349 * 21 20 19 39 39 H 1.08001 * 119.94237 * 180.02562 * 22 20 19 40 40 H 1.08004 * 120.06234 * 179.97438 * 23 22 20 41 41 H 1.08996 * 109.47234 * 60.00407 * 24 12 11 42 42 H 1.09007 * 109.47106 * 180.02562 * 24 12 11 43 43 H 1.08996 * 109.47580 * 300.00502 * 25 24 12 44 44 H 1.08995 * 109.47412 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0027 11 6 1.4807 -4.9870 0.0033 12 6 0.6007 -5.0674 1.2523 13 7 -0.1343 -6.3394 1.2525 14 6 -0.5015 -6.7350 2.6188 15 6 -1.2515 -8.0414 2.5790 16 8 -1.4593 -8.5894 1.5170 17 6 -1.7299 -8.6517 3.8261 18 6 -1.4856 -8.0245 5.0541 19 6 -1.9391 -8.5959 6.2153 20 6 -2.6310 -9.8017 6.1758 21 8 -3.0723 -10.3658 7.3279 22 6 -2.8718 -10.4314 4.9592 23 6 -2.4271 -9.8658 3.7919 24 6 -0.3937 -3.9045 1.2512 25 6 0.3712 -2.5795 1.2508 26 1 -0.4850 0.8399 -0.0004 27 1 0.6243 -2.5575 -0.8880 28 1 2.8722 -3.6034 0.8927 29 1 2.8722 -3.6050 -0.8873 30 1 2.1890 -5.8154 0.0045 31 1 0.8543 -5.0454 -0.8868 32 1 1.2270 -5.0090 2.1424 33 1 -0.9493 -6.2862 0.6600 34 1 0.4014 -6.8528 3.2179 35 1 -1.1339 -5.9659 3.0621 36 1 -0.9442 -7.0906 5.0863 37 1 -1.7547 -8.1109 7.1624 38 1 -2.4379 -10.9691 7.7386 39 1 -3.4099 -11.3674 4.9339 40 1 -2.6142 -10.3557 2.8478 41 1 -1.0201 -3.9629 0.3612 42 1 -1.0204 -3.9615 2.1413 43 1 0.9976 -2.5211 2.1409 44 1 -0.3371 -1.7511 1.2496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:53 Heat of formation + Delta-G solvation = -90.877687 kcal Electronic energy + Delta-G solvation = -23801.997530 eV Core-core repulsion = 20296.674677 eV Total energy + Delta-G solvation = -3505.322853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26091 -40.10352 -39.42816 -37.46721 -36.19329 -34.17071 -32.35634 -31.61808 -31.30494 -30.41496 -27.67057 -25.79703 -24.23063 -23.49940 -23.18238 -22.11243 -21.10976 -20.35656 -19.47190 -18.36775 -17.97370 -17.29861 -16.64903 -16.54908 -16.41109 -15.97539 -15.74300 -15.31795 -14.97338 -14.86036 -14.73212 -14.51768 -14.29490 -13.95821 -13.66406 -13.59818 -13.19513 -13.01357 -12.95701 -12.88440 -12.83775 -12.55652 -12.22119 -12.12420 -11.76941 -11.69731 -11.46416 -11.19985 -10.80008 -10.74063 -10.52405 -10.35385 -10.13341 -9.72182 -9.27979 -8.05222 -6.19481 -0.45739 0.33733 1.33868 1.42127 1.43075 1.50644 2.44764 2.66594 2.74503 3.20175 3.20811 3.41665 3.78267 3.93060 3.94445 4.13020 4.19866 4.28774 4.35654 4.44880 4.48926 4.50597 4.62224 4.71423 4.73899 4.81619 4.85650 4.97773 4.98534 5.11337 5.17707 5.25716 5.29777 5.32154 5.37140 5.42051 5.49950 5.62526 5.70469 5.71414 6.06487 6.07546 6.24597 6.33928 6.44759 6.57298 6.79731 6.93714 7.48509 8.97961 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.002414 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.300116 B =11595.193012 C =12179.735124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.100 4.100 11 C -0.095 4.095 12 C 0.104 3.896 13 N -0.682 5.682 14 C 0.011 3.989 15 C 0.400 3.600 16 O -0.479 6.479 17 C -0.196 4.196 18 C -0.049 4.049 19 C -0.162 4.162 20 C 0.140 3.860 21 O -0.507 6.507 22 C -0.165 4.165 23 C -0.055 4.055 24 C -0.134 4.134 25 C -0.097 4.097 26 H 0.259 0.741 27 H -0.013 1.013 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.342 0.658 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.418 0.582 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -20.581 15.549 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.133 4.133 12 C -0.005 4.005 13 N -0.312 5.312 14 C -0.118 4.118 15 C 0.280 3.720 16 O -0.355 6.355 17 C -0.197 4.197 18 C -0.067 4.067 19 C -0.180 4.180 20 C 0.095 3.905 21 O -0.322 6.322 22 C -0.184 4.184 23 C -0.073 4.073 24 C -0.173 4.173 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.176 0.824 37 H 0.174 0.826 38 H 0.279 0.721 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.006 -20.838 14.887 25.921 hybrid contribution -0.173 1.541 -0.075 1.552 sum -4.179 -19.297 14.812 24.683 Atomic orbital electron populations 1.70015 1.07136 1.26977 1.51642 1.25739 0.95653 1.02308 0.95036 0.85729 0.78456 0.79349 0.78823 1.19911 1.21128 1.19458 1.21626 0.93048 0.92409 1.50118 0.93058 1.18649 0.93140 0.92364 0.93355 1.21490 0.97870 0.94299 1.00188 1.21400 0.98096 0.96728 0.97052 1.21464 0.94398 0.85591 0.99067 1.60470 1.29310 1.31824 1.09619 1.22437 1.01733 0.95081 0.92587 1.22677 0.75401 0.86345 0.87614 1.90525 1.48634 1.62398 1.33961 1.20544 1.05783 0.98482 0.94899 1.21497 0.95611 0.99378 0.90221 1.21569 0.99553 0.96718 1.00207 1.18954 0.92768 0.92621 0.86116 1.84686 1.46424 1.64738 1.36383 1.21458 1.03034 1.02285 0.91595 1.21256 0.93511 0.93502 0.99041 1.22183 0.98273 0.96620 1.00243 1.21330 0.98688 0.95770 0.97807 0.93208 0.99500 0.92852 0.93808 0.91143 0.93715 0.89674 0.84024 0.85487 0.90028 0.82416 0.82639 0.72119 0.83374 0.85104 0.94065 0.92204 0.94845 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 11.32 21.44 0.24 -53.19 16 2 C 0.01 0.60 5.30 84.65 0.45 1.05 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.17 2.10 -11.54 -0.02 2.14 16 10 C -0.10 -4.10 5.14 30.59 0.16 -3.95 16 11 C -0.09 -3.27 5.53 30.59 0.17 -3.10 16 12 C 0.10 3.23 2.47 44.92 0.11 3.34 16 13 N -0.68 -18.91 5.87 -495.56 -2.91 -21.82 16 14 C 0.01 0.23 4.57 85.55 0.39 0.62 16 15 C 0.40 9.24 7.14 27.94 0.20 9.44 16 16 O -0.48 -14.51 16.19 -3.08 -0.05 -14.56 16 17 C -0.20 -3.65 5.87 -20.15 -0.12 -3.77 16 18 C -0.05 -0.67 9.44 22.44 0.21 -0.46 16 19 C -0.16 -1.98 9.95 22.21 0.22 -1.76 16 20 C 0.14 1.86 6.71 22.68 0.15 2.01 16 21 O -0.51 -5.28 13.48 -89.76 -1.21 -6.49 16 22 C -0.17 -2.39 9.95 22.21 0.22 -2.17 16 23 C -0.05 -0.99 9.57 22.44 0.21 -0.78 16 24 C -0.13 -4.84 5.17 30.59 0.16 -4.68 16 25 C -0.10 -4.47 4.98 30.60 0.15 -4.32 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.46 7.80 -2.39 -0.02 2.44 16 33 H 0.34 10.10 8.17 -89.69 -0.73 9.37 16 34 H 0.13 2.13 7.99 -2.39 -0.02 2.11 16 35 H 0.08 1.51 7.38 -2.39 -0.02 1.49 16 36 H 0.16 1.46 7.04 -2.91 -0.02 1.44 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.42 0.11 9.06 -74.06 -0.67 -0.56 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.13 2.47 7.64 -2.91 -0.02 2.45 16 41 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 42 H 0.06 1.89 7.45 -2.38 -0.02 1.88 16 43 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 2.94 6.07 -2.39 -0.01 2.93 16 Total: -1.00 -69.06 357.93 0.59 -68.46 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.39 Total: 17.53 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 2.88 Total: -35.73 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.67 Total: -75.01 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.26 Total: -21.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.06 0.59 -68.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.416 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds