Wall clock time and date at job start Tue Mar 31 2020 08:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48500 * 109.46971 * 275.17450 * 3 2 1 5 5 H 1.48497 * 109.46964 * 35.16962 * 3 2 1 6 6 H 1.48494 * 109.47220 * 155.17585 * 3 2 1 7 7 C 1.38952 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99708 * 338.74680 * 7 2 1 9 9 N 1.37087 * 120.00504 * 158.74975 * 7 2 1 10 10 C 1.46500 * 119.99662 * 317.51782 * 9 7 2 11 11 C 1.50701 * 109.47373 * 264.28443 * 10 9 7 12 12 C 1.38233 * 120.00081 * 271.37156 * 11 10 9 13 13 C 1.38232 * 119.99910 * 179.80551 * 12 11 10 14 14 C 1.38239 * 120.00091 * 0.39746 * 13 12 11 15 15 C 1.38234 * 119.99815 * 359.85665 * 14 13 12 16 16 C 1.38231 * 120.00174 * 359.95413 * 15 14 13 17 17 C 1.34771 * 120.00508 * 137.51547 * 9 7 2 18 18 O 1.21297 * 120.00667 * 184.66066 * 17 9 7 19 19 C 1.50699 * 119.99785 * 4.66667 * 17 9 7 20 20 H 1.09002 * 109.47288 * 36.00403 * 19 17 9 21 21 C 1.53006 * 109.47120 * 276.00236 * 19 17 9 22 22 C 1.52998 * 109.47111 * 179.97438 * 21 19 17 23 23 C 1.53008 * 109.46685 * 60.00516 * 22 21 19 24 24 C 1.52993 * 109.47140 * 299.99555 * 23 22 21 25 25 C 1.53000 * 109.47189 * 156.00448 * 19 17 9 26 26 H 1.08996 * 109.47417 * 299.99789 * 25 19 17 27 27 O 1.42908 * 109.47143 * 59.99976 * 25 19 17 28 28 H 0.96987 * 120.00284 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47381 * 24.28686 * 10 9 7 30 30 H 1.09011 * 109.47255 * 144.28593 * 10 9 7 31 31 H 1.08000 * 120.00246 * 359.97438 * 12 11 10 32 32 H 1.08004 * 120.00546 * 180.22698 * 13 12 11 33 33 H 1.08003 * 120.00131 * 179.82936 * 14 13 12 34 34 H 1.07999 * 119.99813 * 179.97438 * 15 14 13 35 35 H 1.07999 * 120.00261 * 180.02562 * 16 15 14 36 36 H 1.08994 * 109.47476 * 300.00442 * 21 19 17 37 37 H 1.09003 * 109.46465 * 59.99987 * 21 19 17 38 38 H 1.09000 * 109.47216 * 180.02562 * 22 21 19 39 39 H 1.08994 * 109.47628 * 300.00736 * 22 21 19 40 40 H 1.08994 * 109.46907 * 59.99779 * 23 22 21 41 41 H 1.09003 * 109.46880 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47419 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47104 * 300.00128 * 24 23 22 44 44 H 0.96699 * 113.99734 * 179.97438 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3862 2.1096 -1.3944 5 1 1.5044 2.6187 0.8064 6 1 3.5960 1.4112 0.5878 7 6 2.0090 -1.2033 0.0005 8 1 1.5241 -2.1067 0.3400 9 7 3.3100 -1.2439 -0.4297 10 6 3.7085 -0.5015 -1.6281 11 6 3.6789 -1.4210 -2.8218 12 6 4.8000 -2.1582 -3.1543 13 6 4.7715 -3.0047 -4.2467 14 6 3.6246 -3.1077 -5.0116 15 6 2.5052 -2.3665 -4.6822 16 6 2.5324 -1.5230 -3.5874 17 6 4.2223 -1.9666 0.2497 18 8 5.3890 -1.9353 -0.0805 19 6 3.7929 -2.8137 1.4198 20 1 2.8100 -3.2398 1.2185 21 6 3.7251 -1.9473 2.6791 22 6 3.2885 -2.8072 3.8668 23 6 4.2997 -3.9359 4.0782 24 6 4.3675 -4.8023 2.8190 25 6 4.8044 -3.9421 1.6309 26 1 4.8527 -4.5593 0.7339 27 8 6.0930 -3.3834 1.8948 28 1 -0.4850 0.8399 -0.0004 29 1 3.0176 0.3259 -1.7896 30 1 4.7177 -0.1113 -1.4950 31 1 5.6972 -2.0750 -2.5589 32 1 5.6461 -3.5835 -4.5045 33 1 3.6032 -3.7670 -5.8668 34 1 1.6094 -2.4467 -5.2799 35 1 1.6578 -0.9442 -3.3297 36 1 4.7079 -1.5212 2.8803 37 1 3.0044 -1.1435 2.5285 38 1 3.2397 -2.1900 4.7638 39 1 2.3056 -3.2331 3.6653 40 1 5.2826 -3.5101 4.2796 41 1 3.9889 -4.5483 4.9247 42 1 5.0875 -5.6067 2.9697 43 1 3.3845 -5.2281 2.6175 44 1 6.7854 -4.0428 2.0395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181080731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:10 Heat of formation + Delta-G solvation = -65.604614 kcal Electronic energy + Delta-G solvation = -26164.745221 eV Core-core repulsion = 22660.518290 eV Total energy + Delta-G solvation = -3504.226931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.71369 -38.68351 -37.36541 -34.87521 -34.47434 -32.20656 -31.28468 -30.34632 -30.13929 -29.34215 -25.93202 -24.80671 -22.65155 -22.09437 -21.97212 -20.90335 -19.50530 -18.82499 -17.14890 -16.52112 -16.31912 -15.80313 -15.29661 -14.98780 -14.68153 -14.37530 -14.14227 -13.97688 -13.79775 -13.33218 -12.88397 -12.77400 -12.63389 -12.41202 -12.17379 -11.99370 -11.97394 -11.77186 -11.44779 -11.24332 -11.01187 -10.77078 -10.73413 -10.48680 -10.45200 -10.19963 -10.10630 -10.00454 -9.61860 -9.33608 -9.13278 -8.52026 -8.38624 -8.10131 -7.68761 -6.47833 -4.09744 1.84808 1.94201 3.05711 3.21979 3.32618 3.80315 4.12686 4.18808 4.62102 4.74024 4.93839 5.05746 5.19332 5.25192 5.36747 5.39176 5.49352 5.60718 5.69434 5.74160 5.80825 5.86123 5.91378 5.94249 5.96829 6.07099 6.14197 6.19415 6.27068 6.39086 6.41246 6.49000 6.52593 6.56241 6.61132 6.63996 6.88536 6.98238 6.99117 6.99998 7.29351 7.40192 7.54674 8.10794 8.18715 8.25804 8.99875 9.40019 9.75326 10.62595 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.006911 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.176301 B = 4050.673468 C = 5548.300336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.072 3.928 3 Si 0.862 3.138 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.338 4.338 8 H 0.100 0.900 9 N -0.467 5.467 10 C 0.139 3.861 11 C -0.083 4.083 12 C -0.101 4.101 13 C -0.133 4.133 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.094 4.094 17 C 0.496 3.504 18 O -0.570 6.570 19 C -0.077 4.077 20 H 0.099 0.901 21 C -0.098 4.098 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.151 4.151 25 C 0.124 3.876 26 H 0.046 0.954 27 O -0.536 6.536 28 H 0.274 0.726 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -6.566 0.241 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.135 4.135 3 Si 0.688 3.312 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.118 0.882 9 N -0.189 5.189 10 C 0.016 3.984 11 C -0.084 4.084 12 C -0.119 4.119 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.112 4.112 17 C 0.285 3.715 18 O -0.452 6.452 19 C -0.098 4.098 20 H 0.117 0.883 21 C -0.136 4.136 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.189 4.189 25 C 0.064 3.936 26 H 0.064 0.936 27 O -0.338 6.338 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.591 -5.850 0.020 8.092 hybrid contribution 0.250 0.277 -0.002 0.373 sum 5.841 -5.573 0.018 8.073 Atomic orbital electron populations 1.69763 1.06203 1.28045 1.45490 1.25321 0.94933 0.98183 0.95097 0.87113 0.81600 0.84003 0.78438 1.20094 1.21266 1.18239 1.18946 0.85892 0.96078 1.45567 0.88218 1.43710 1.09233 1.45405 1.20555 1.20567 1.00652 0.93254 0.83947 1.20354 0.93558 0.98537 0.95940 1.21257 0.98766 0.95645 0.96256 1.21045 0.97963 0.99713 0.96369 1.21011 0.93814 1.00153 0.99933 1.21056 0.98059 0.97720 0.97957 1.21164 0.97690 0.98271 0.94125 1.20337 0.84980 0.82623 0.83581 1.90549 1.17816 1.67411 1.69398 1.21077 0.98440 0.95206 0.95089 0.88349 1.21263 1.02213 0.98078 0.92071 1.21518 0.98647 0.96910 0.98241 1.21434 1.00236 0.96963 0.96401 1.22278 1.01876 0.98071 0.96666 1.21520 0.84052 0.93314 0.94668 0.93594 1.86768 1.17416 1.35803 1.93831 0.91593 0.90651 0.90958 0.85498 0.86882 0.86986 0.86686 0.85790 0.91701 0.90380 0.92324 0.92009 0.91592 0.92852 0.92268 0.91263 0.79709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.92 13.96 55.50 0.77 -22.15 16 2 C 0.07 1.83 5.25 -17.47 -0.09 1.74 16 3 Si 0.86 20.13 25.25 -169.99 -4.29 15.83 16 4 H -0.27 -6.21 6.74 56.52 0.38 -5.83 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.34 -8.44 8.25 -14.94 -0.12 -8.56 16 8 H 0.10 2.63 6.78 -52.49 -0.36 2.27 16 9 N -0.47 -11.04 2.07 -116.09 -0.24 -11.28 16 10 C 0.14 3.11 4.12 -5.19 -0.02 3.09 16 11 C -0.08 -1.70 5.41 -104.62 -0.57 -2.26 16 12 C -0.10 -1.93 9.47 -39.59 -0.37 -2.30 16 13 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 16 C -0.09 -1.82 9.70 -39.58 -0.38 -2.20 16 17 C 0.50 11.39 6.69 -10.99 -0.07 11.32 16 18 O -0.57 -13.95 13.61 -15.59 -0.21 -14.16 16 19 C -0.08 -1.51 1.66 -91.77 -0.15 -1.66 16 20 H 0.10 1.96 6.62 -51.93 -0.34 1.61 16 21 C -0.10 -1.83 4.98 -26.73 -0.13 -1.97 16 22 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 23 C -0.11 -1.48 5.78 -26.73 -0.15 -1.64 16 24 C -0.15 -1.99 5.64 -26.71 -0.15 -2.14 16 25 C 0.12 2.07 3.00 -26.71 -0.08 1.99 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 O -0.54 -9.19 10.42 -56.36 -0.59 -9.78 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.08 1.72 4.11 -51.93 -0.21 1.50 16 30 H 0.07 1.62 7.49 -51.92 -0.39 1.23 16 31 H 0.13 2.53 7.19 -52.49 -0.38 2.15 16 32 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 37 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.36 4.47 9.08 45.56 0.41 4.88 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -29.14 345.73 -8.84 -37.98 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.83 Total: 12.40 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.66 Total: -14.05 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.53 Total: -33.43 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.80 Total: -23.94 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.29 Total: 15.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.14 -8.84 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181080731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.623 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds