Wall clock time and date at job start Tue Mar 31 2020 08:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48500 * 109.46971 * 275.17450 * 3 2 1 5 5 H 1.48497 * 109.46964 * 35.16962 * 3 2 1 6 6 H 1.48494 * 109.47220 * 155.17585 * 3 2 1 7 7 C 1.38952 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99708 * 338.74680 * 7 2 1 9 9 N 1.37087 * 120.00504 * 158.74975 * 7 2 1 10 10 C 1.46500 * 119.99662 * 317.51782 * 9 7 2 11 11 C 1.50701 * 109.47373 * 264.28443 * 10 9 7 12 12 C 1.38233 * 120.00081 * 271.37156 * 11 10 9 13 13 C 1.38232 * 119.99910 * 179.80551 * 12 11 10 14 14 C 1.38239 * 120.00091 * 0.39746 * 13 12 11 15 15 C 1.38234 * 119.99815 * 359.85665 * 14 13 12 16 16 C 1.38231 * 120.00174 * 359.95413 * 15 14 13 17 17 C 1.34771 * 120.00508 * 137.51547 * 9 7 2 18 18 O 1.21297 * 120.00667 * 184.66066 * 17 9 7 19 19 C 1.50699 * 119.99785 * 4.66667 * 17 9 7 20 20 H 1.09002 * 109.47288 * 36.00403 * 19 17 9 21 21 C 1.53006 * 109.47120 * 276.00236 * 19 17 9 22 22 C 1.52998 * 109.47111 * 179.97438 * 21 19 17 23 23 C 1.53008 * 109.46685 * 60.00516 * 22 21 19 24 24 C 1.52993 * 109.47140 * 299.99555 * 23 22 21 25 25 C 1.53000 * 109.47189 * 156.00448 * 19 17 9 26 26 H 1.08996 * 109.47417 * 299.99789 * 25 19 17 27 27 O 1.42908 * 109.47143 * 59.99976 * 25 19 17 28 28 H 0.96987 * 120.00284 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47381 * 24.28686 * 10 9 7 30 30 H 1.09011 * 109.47255 * 144.28593 * 10 9 7 31 31 H 1.08000 * 120.00246 * 359.97438 * 12 11 10 32 32 H 1.08004 * 120.00546 * 180.22698 * 13 12 11 33 33 H 1.08003 * 120.00131 * 179.82936 * 14 13 12 34 34 H 1.07999 * 119.99813 * 179.97438 * 15 14 13 35 35 H 1.07999 * 120.00261 * 180.02562 * 16 15 14 36 36 H 1.08994 * 109.47476 * 300.00442 * 21 19 17 37 37 H 1.09003 * 109.46465 * 59.99987 * 21 19 17 38 38 H 1.09000 * 109.47216 * 180.02562 * 22 21 19 39 39 H 1.08994 * 109.47628 * 300.00736 * 22 21 19 40 40 H 1.08994 * 109.46907 * 59.99779 * 23 22 21 41 41 H 1.09003 * 109.46880 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47419 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47104 * 300.00128 * 24 23 22 44 44 H 0.96699 * 113.99734 * 179.97438 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3862 2.1096 -1.3944 5 1 1.5044 2.6187 0.8064 6 1 3.5960 1.4112 0.5878 7 6 2.0090 -1.2033 0.0005 8 1 1.5241 -2.1067 0.3400 9 7 3.3100 -1.2439 -0.4297 10 6 3.7085 -0.5015 -1.6281 11 6 3.6789 -1.4210 -2.8218 12 6 4.8000 -2.1582 -3.1543 13 6 4.7715 -3.0047 -4.2467 14 6 3.6246 -3.1077 -5.0116 15 6 2.5052 -2.3665 -4.6822 16 6 2.5324 -1.5230 -3.5874 17 6 4.2223 -1.9666 0.2497 18 8 5.3890 -1.9353 -0.0805 19 6 3.7929 -2.8137 1.4198 20 1 2.8100 -3.2398 1.2185 21 6 3.7251 -1.9473 2.6791 22 6 3.2885 -2.8072 3.8668 23 6 4.2997 -3.9359 4.0782 24 6 4.3675 -4.8023 2.8190 25 6 4.8044 -3.9421 1.6309 26 1 4.8527 -4.5593 0.7339 27 8 6.0930 -3.3834 1.8948 28 1 -0.4850 0.8399 -0.0004 29 1 3.0176 0.3259 -1.7896 30 1 4.7177 -0.1113 -1.4950 31 1 5.6972 -2.0750 -2.5589 32 1 5.6461 -3.5835 -4.5045 33 1 3.6032 -3.7670 -5.8668 34 1 1.6094 -2.4467 -5.2799 35 1 1.6578 -0.9442 -3.3297 36 1 4.7079 -1.5212 2.8803 37 1 3.0044 -1.1435 2.5285 38 1 3.2397 -2.1900 4.7638 39 1 2.3056 -3.2331 3.6653 40 1 5.2826 -3.5101 4.2796 41 1 3.9889 -4.5483 4.9247 42 1 5.0875 -5.6067 2.9697 43 1 3.3845 -5.2281 2.6175 44 1 6.7854 -4.0428 2.0395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181080731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:10 Heat of formation + Delta-G solvation = -81.751816 kcal Electronic energy + Delta-G solvation = -26165.445416 eV Core-core repulsion = 22660.518290 eV Total energy + Delta-G solvation = -3504.927126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34953 -40.07991 -38.89062 -36.71187 -35.82413 -34.09678 -32.86089 -31.73929 -31.54588 -30.63896 -27.59289 -26.71663 -24.05521 -23.40131 -23.38156 -22.33997 -20.96506 -20.57880 -18.86638 -18.13933 -17.64799 -17.39712 -17.12197 -16.42238 -16.16723 -15.87779 -15.63925 -15.49854 -15.34383 -14.76528 -14.57576 -14.29655 -14.19787 -13.87424 -13.65190 -13.55406 -13.44119 -13.20625 -13.09778 -12.81582 -12.53793 -12.42259 -12.11368 -12.00974 -11.90767 -11.83492 -11.73108 -11.41629 -11.09834 -10.95386 -10.65351 -10.21478 -9.78550 -9.62449 -9.58915 -8.50400 -6.12112 0.43514 0.53853 1.14301 1.26677 1.38297 1.97712 2.17111 2.57942 2.94894 3.07361 3.52037 3.82698 3.87866 3.92490 3.98163 4.03188 4.18442 4.28921 4.30242 4.33640 4.36652 4.45395 4.53866 4.58103 4.60138 4.68010 4.73433 4.79150 4.96892 4.99113 5.11856 5.12513 5.20260 5.24883 5.30073 5.33471 5.45571 5.47488 5.59958 5.61071 5.61866 5.81376 6.09812 6.16216 6.28523 6.99914 7.10876 7.48426 7.86267 8.63545 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.006911 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.176301 B = 4050.673468 C = 5548.300336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.044 3.956 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.326 4.326 8 H 0.081 0.919 9 N -0.476 5.476 10 C 0.138 3.862 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.486 3.514 18 O -0.588 6.588 19 C -0.079 4.079 20 H 0.090 0.910 21 C -0.092 4.092 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.142 4.142 25 C 0.128 3.872 26 H 0.038 0.962 27 O -0.558 6.558 28 H 0.278 0.722 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -8.679 -0.280 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.161 4.161 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.099 0.901 9 N -0.198 5.198 10 C 0.016 3.984 11 C -0.107 4.107 12 C -0.134 4.134 13 C -0.145 4.145 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.133 4.133 17 C 0.277 3.723 18 O -0.471 6.471 19 C -0.100 4.100 20 H 0.108 0.892 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.180 4.180 25 C 0.068 3.932 26 H 0.056 0.944 27 O -0.363 6.363 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.239 -7.967 -0.504 10.132 hybrid contribution 0.118 0.889 0.078 0.900 sum 6.357 -7.078 -0.426 9.524 Atomic orbital electron populations 1.69800 1.06994 1.28786 1.47160 1.25654 0.95276 0.99948 0.95177 0.86455 0.79796 0.81957 0.78816 1.19009 1.20569 1.19982 1.18749 0.86240 0.95386 1.44974 0.90121 1.43839 1.08850 1.45775 1.21329 1.20510 0.99507 0.93640 0.84764 1.20219 0.94981 0.99556 0.95991 1.21203 0.97716 0.96887 0.97632 1.21403 0.99612 0.98547 0.94920 1.21479 0.92425 0.99346 1.00332 1.21398 0.99756 0.96394 0.96802 1.21146 0.96753 0.99693 0.95691 1.21030 0.84711 0.82465 0.84133 1.90518 1.18459 1.68062 1.70045 1.21130 0.99121 0.95823 0.93885 0.89191 1.21178 1.00460 0.97861 0.93498 1.21511 0.99329 0.97340 0.96770 1.21417 0.99351 0.96377 0.97345 1.22223 1.02947 0.98053 0.94764 1.21444 0.83384 0.92080 0.96260 0.94376 1.86709 1.18222 1.37486 1.93926 0.91195 0.91605 0.92012 0.87122 0.83769 0.82669 0.83803 0.87503 0.93215 0.93416 0.91018 0.91867 0.91856 0.89925 0.89183 0.90717 0.77297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.72 13.96 21.66 0.30 -48.42 16 2 C 0.04 2.33 5.25 84.93 0.45 2.77 16 3 Si 0.90 42.85 25.25 68.60 1.73 44.58 16 4 H -0.26 -11.99 6.74 99.48 0.67 -11.32 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.33 -17.01 8.25 84.04 0.69 -16.31 16 8 H 0.08 4.47 6.78 -2.91 -0.02 4.45 16 9 N -0.48 -23.51 2.07 -639.60 -1.33 -24.84 16 10 C 0.14 6.50 4.12 85.63 0.35 6.85 16 11 C -0.11 -4.49 5.41 -19.86 -0.11 -4.59 16 12 C -0.12 -4.44 9.47 22.27 0.21 -4.22 16 13 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 14 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 15 C -0.13 -3.89 10.05 22.27 0.22 -3.66 16 16 C -0.11 -4.45 9.70 22.27 0.22 -4.24 16 17 C 0.49 23.23 6.69 87.66 0.59 23.82 16 18 O -0.59 -29.75 13.61 17.12 0.23 -29.51 16 19 C -0.08 -3.15 1.66 -11.54 -0.02 -3.16 16 20 H 0.09 3.71 6.62 -2.39 -0.02 3.70 16 21 C -0.09 -3.51 4.98 30.60 0.15 -3.36 16 22 C -0.11 -3.24 5.92 30.60 0.18 -3.06 16 23 C -0.11 -2.53 5.78 30.59 0.18 -2.35 16 24 C -0.14 -3.37 5.64 30.61 0.17 -3.20 16 25 C 0.13 4.17 3.00 30.61 0.09 4.26 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 O -0.56 -18.73 10.42 -128.78 -1.34 -20.08 16 28 H 0.28 14.28 8.31 -92.72 -0.77 13.51 16 29 H 0.07 3.14 4.11 -2.39 -0.01 3.13 16 30 H 0.06 2.94 7.49 -2.38 -0.02 2.92 16 31 H 0.11 4.54 7.19 -2.91 -0.02 4.52 16 32 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 37 H 0.05 2.07 7.44 -2.39 -0.02 2.05 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.55 7.68 -2.39 -0.02 1.53 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.38 8.83 9.08 -74.06 -0.67 8.16 16 Total: -1.00 -65.44 345.73 3.72 -61.72 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.29 Total: 33.62 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 3.82 Total: -17.08 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.02 Total: -73.25 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.11 Total: -49.59 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.73 Total: 44.58 kcal Total: -65.44 3.72 -61.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181080731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.030 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds