Wall clock time and date at job start Tue Mar 31 2020 08:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47166 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47242 * 30.00050 * 3 2 1 6 6 H 1.48499 * 109.47104 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99714 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84922 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53841 * 231.32786 * 8 7 2 10 10 C 1.52960 * 109.40439 * 305.37346 * 9 8 7 11 11 H 1.08997 * 109.35179 * 303.52527 * 10 9 8 12 12 N 1.46506 * 109.41207 * 183.70353 * 10 9 8 13 13 C 1.34781 * 119.99469 * 84.64867 * 12 10 9 14 14 O 1.21277 * 120.00377 * 359.97438 * 13 12 10 15 15 C 1.50703 * 119.99443 * 179.97438 * 13 12 10 16 16 H 1.08998 * 109.47500 * 59.99620 * 15 13 12 17 17 C 1.52999 * 109.47004 * 299.99612 * 15 13 12 18 18 O 1.42903 * 109.47256 * 65.00527 * 17 15 13 19 19 C 1.50697 * 109.47177 * 179.97438 * 15 13 12 20 20 C 1.38241 * 119.99635 * 59.72762 * 19 15 13 21 21 C 1.38237 * 119.99863 * 179.79198 * 20 19 15 22 22 C 1.38234 * 119.99868 * 0.45718 * 21 20 19 23 23 C 1.38234 * 119.99836 * 359.77079 * 22 21 20 24 24 C 1.38228 * 120.00451 * 0.02562 * 23 22 21 25 25 C 1.52954 * 109.81926 * 63.59729 * 10 9 8 26 26 C 1.51268 * 120.85002 * 0.02562 * 7 2 1 27 27 H 0.97004 * 119.99860 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.62629 * 351.04456 * 8 7 2 29 29 H 1.08995 * 109.62858 * 111.41903 * 8 7 2 30 30 H 1.09002 * 109.48292 * 185.39434 * 9 8 7 31 31 H 1.08996 * 109.48378 * 65.35087 * 9 8 7 32 32 H 0.96990 * 119.99728 * 264.64660 * 12 10 9 33 33 H 1.08997 * 109.47286 * 305.00087 * 17 15 13 34 34 H 1.09008 * 109.47201 * 184.99867 * 17 15 13 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.00025 * 359.97438 * 20 19 15 37 37 H 1.08000 * 120.00106 * 180.25784 * 21 20 19 38 38 H 1.07994 * 120.00123 * 179.79690 * 22 21 20 39 39 H 1.08001 * 119.99650 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00340 * 179.97438 * 24 23 22 41 41 H 1.09008 * 109.48140 * 56.38154 * 25 10 9 42 42 H 1.08997 * 109.48809 * 176.42258 * 25 10 9 43 43 H 1.08997 * 109.62892 * 8.95583 * 26 7 2 44 44 H 1.09000 * 109.78089 * 248.48008 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9910 -2.1318 -1.1327 10 6 3.3402 -3.5076 -0.9811 11 1 3.5738 -3.9111 0.0041 12 7 3.8605 -4.4088 -2.0123 13 6 5.0180 -5.0687 -1.8089 14 8 5.6289 -4.9162 -0.7724 15 6 5.5529 -5.9961 -2.8695 16 1 5.7272 -5.4357 -3.7879 17 6 4.5356 -7.1075 -3.1354 18 8 3.3471 -6.5421 -3.6922 19 6 6.8492 -6.6033 -2.3984 20 6 6.8781 -7.3594 -1.2415 21 6 8.0664 -7.9200 -0.8117 22 6 9.2275 -7.7167 -1.5336 23 6 9.1995 -6.9567 -2.6880 24 6 8.0105 -6.3996 -3.1201 25 6 1.8233 -3.3833 -1.1329 26 6 1.2676 -2.5151 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 3.8982 -0.2080 -0.1588 29 1 3.8771 -1.5967 0.9571 30 1 5.0752 -2.2354 -1.0871 31 1 3.7071 -1.6991 -2.0920 32 1 3.3721 -4.5304 -2.8414 33 1 4.2944 -7.6110 -2.1993 34 1 4.9585 -7.8271 -3.8365 35 1 2.6566 -7.1907 -3.8863 36 1 5.9718 -7.5146 -0.6750 37 1 8.0882 -8.5142 0.0899 38 1 10.1565 -8.1519 -1.1961 39 1 10.1068 -6.7974 -3.2518 40 1 7.9887 -5.8054 -4.0217 41 1 1.5906 -2.9209 -2.0922 42 1 1.3709 -4.3739 -1.0874 43 1 0.2036 -2.3409 -0.1597 44 1 1.4161 -3.0204 0.9549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181925288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:18 Heat of formation + Delta-G solvation = -81.482295 kcal Electronic energy + Delta-G solvation = -24977.863361 eV Core-core repulsion = 21472.947922 eV Total energy + Delta-G solvation = -3504.915439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29320 -38.72011 -37.09407 -36.55059 -33.54549 -33.27642 -31.44989 -30.97774 -29.62440 -28.85946 -27.01947 -24.27706 -22.73067 -22.51448 -21.53194 -21.17803 -19.67916 -19.28612 -17.86717 -16.98121 -16.67526 -15.98812 -15.71472 -15.39968 -14.90488 -14.60569 -14.39274 -14.27597 -13.71674 -13.46168 -13.17378 -13.08836 -12.87019 -12.63182 -12.51353 -12.23528 -11.99169 -11.63512 -11.55351 -11.19722 -11.03547 -10.94617 -10.77304 -10.65372 -10.36807 -10.07782 -9.93308 -9.61869 -9.39466 -8.98921 -8.91352 -8.82938 -8.72909 -8.43697 -8.18948 -6.07651 -3.97681 1.23449 1.35938 2.98413 3.29575 3.38329 3.41773 3.52945 3.70725 4.08404 4.41810 4.60554 4.73670 4.90733 4.94184 4.95401 5.07489 5.10301 5.21121 5.36515 5.42662 5.48205 5.63759 5.80815 5.89318 5.96727 5.98104 6.28255 6.36358 6.43613 6.52493 6.54402 6.60124 6.79149 6.87400 6.91923 6.95591 7.03388 7.14849 7.33880 7.35205 7.48708 7.68691 7.75802 7.82770 8.12259 8.41889 8.73157 8.99430 9.57872 11.01996 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.003476 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.236805 B = 8053.673972 C = 8695.475501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.487 4.487 8 C -0.013 4.013 9 C -0.113 4.113 10 C 0.154 3.846 11 H 0.075 0.925 12 N -0.711 5.711 13 C 0.514 3.486 14 O -0.541 6.541 15 C -0.072 4.072 16 H 0.108 0.892 17 C 0.091 3.909 18 O -0.570 6.570 19 C -0.064 4.064 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.111 4.111 26 C 0.013 3.987 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.403 0.597 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.386 0.614 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.060 0.940 44 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.893 -17.101 -8.820 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.506 4.506 8 C -0.051 4.051 9 C -0.152 4.152 10 C 0.051 3.949 11 H 0.093 0.907 12 N -0.362 5.362 13 C 0.298 3.702 14 O -0.419 6.419 15 C -0.094 4.094 16 H 0.126 0.874 17 C 0.013 3.987 18 O -0.377 6.377 19 C -0.065 4.065 20 C -0.100 4.100 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.025 4.025 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.239 0.761 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 12.476 -16.312 -8.006 22.042 hybrid contribution -0.057 0.438 -0.538 0.696 sum 12.418 -15.874 -8.544 21.891 Atomic orbital electron populations 1.69838 1.06127 1.26876 1.50084 1.24834 0.94715 0.98556 0.94589 0.86658 0.80014 0.83280 0.78421 1.20455 1.21668 1.19181 1.20056 0.89382 0.91475 1.49690 1.19712 0.96542 0.94981 0.93897 1.21900 0.97247 0.95378 1.00690 1.21015 0.94437 0.88963 0.90480 0.90729 1.46438 1.23160 1.44736 1.21889 1.20119 0.81493 0.80928 0.87653 1.90707 1.58226 1.65089 1.27841 1.20325 0.92851 0.96366 0.99811 0.87418 1.22033 0.85083 0.93854 0.97719 1.86351 1.26886 1.39189 1.85245 1.19142 0.93203 0.98134 0.95976 1.20956 0.98386 0.95715 0.94910 1.21119 0.92744 1.00389 0.99820 1.21137 0.98112 0.99037 0.95503 1.21054 0.97644 0.98474 0.97130 1.21007 0.92171 0.99685 0.99842 1.21890 0.92434 0.98491 1.02179 1.19331 0.98655 0.92789 0.91712 0.92645 0.95191 0.96300 0.94583 0.93124 0.76087 0.92910 0.92462 0.76560 0.86218 0.86100 0.86266 0.86120 0.86089 0.92786 0.94664 0.92165 0.97674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 12.73 55.43 0.71 -25.05 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.56 27.27 -169.99 -4.64 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.37 6.46 56.52 0.37 -6.00 16 7 C -0.49 -13.05 5.51 -98.92 -0.55 -13.60 16 8 C -0.01 -0.32 5.59 -27.49 -0.15 -0.48 16 9 C -0.11 -2.49 5.50 -26.63 -0.15 -2.64 16 10 C 0.15 3.16 2.35 -67.97 -0.16 3.00 16 11 H 0.07 1.69 7.58 -51.93 -0.39 1.29 16 12 N -0.71 -12.10 4.81 -53.84 -0.26 -12.36 16 13 C 0.51 8.61 6.98 -10.98 -0.08 8.53 16 14 O -0.54 -11.08 14.75 5.56 0.08 -11.00 16 15 C -0.07 -0.89 2.67 -92.92 -0.25 -1.14 16 16 H 0.11 1.21 7.88 -51.93 -0.41 0.80 16 17 C 0.09 0.87 6.16 37.16 0.23 1.10 16 18 O -0.57 -5.31 11.43 -35.23 -0.40 -5.71 16 19 C -0.06 -0.80 4.40 -104.62 -0.46 -1.26 16 20 C -0.08 -1.03 7.97 -39.58 -0.32 -1.34 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 23 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 24 C -0.11 -1.21 9.67 -39.59 -0.38 -1.59 16 25 C -0.11 -2.35 5.40 -26.65 -0.14 -2.49 16 26 C 0.01 0.33 5.97 -27.50 -0.16 0.16 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.40 6.14 6.67 -40.82 -0.27 5.87 16 33 H 0.05 0.51 7.59 -51.93 -0.39 0.12 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 35 H 0.39 1.91 9.12 45.56 0.42 2.33 16 36 H 0.12 1.53 7.58 -52.49 -0.40 1.13 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.12 7.95 -52.48 -0.42 0.70 16 41 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 44 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -32.31 351.13 -8.96 -41.27 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.88 Total: 5.41 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.86 Total: -14.78 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.45 Total: -37.41 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.32 Total: -16.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.64 Total: 16.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.31 -8.96 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181925288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.212 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds