Wall clock time and date at job start Tue Mar 31 2020 08:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48493 * 109.47126 * 174.64179 * 3 2 1 5 5 H 1.48501 * 109.47064 * 294.64238 * 3 2 1 6 6 H 1.48497 * 109.46626 * 54.64047 * 3 2 1 7 7 C 1.37875 * 120.00211 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85483 * 164.56276 * 7 2 1 9 9 C 1.53231 * 108.53771 * 231.32729 * 8 7 2 10 10 C 1.52954 * 109.40461 * 305.36607 * 9 8 7 11 11 H 1.08995 * 109.41788 * 303.49644 * 10 9 8 12 12 N 1.46496 * 109.41649 * 183.70573 * 10 9 8 13 13 C 1.34776 * 120.00482 * 154.99898 * 12 10 9 14 14 O 1.21278 * 119.99551 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00076 * 179.97438 * 13 12 10 16 16 H 1.09001 * 109.47788 * 300.00345 * 15 13 12 17 17 C 1.52998 * 109.47226 * 60.00838 * 15 13 12 18 18 O 1.42898 * 109.47578 * 184.99888 * 17 15 13 19 19 C 1.50708 * 109.46853 * 180.02562 * 15 13 12 20 20 C 1.38228 * 120.00055 * 299.72716 * 19 15 13 21 21 C 1.38228 * 120.00093 * 179.78894 * 20 19 15 22 22 C 1.38240 * 119.99991 * 0.44133 * 21 20 19 23 23 C 1.38229 * 119.99620 * 359.81508 * 22 21 20 24 24 C 1.38230 * 120.00273 * 359.97379 * 23 22 21 25 25 C 1.52962 * 109.81310 * 63.60353 * 10 9 8 26 26 C 1.51271 * 120.85019 * 344.54325 * 7 2 1 27 27 H 0.96997 * 120.00183 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.62517 * 111.60695 * 8 7 2 29 29 H 1.09001 * 109.62463 * 351.04167 * 8 7 2 30 30 H 1.08998 * 109.48099 * 65.35287 * 9 8 7 31 31 H 1.09003 * 109.47738 * 185.39230 * 9 8 7 32 32 H 0.97005 * 119.99571 * 335.00854 * 12 10 9 33 33 H 1.09004 * 109.47067 * 304.99567 * 17 15 13 34 34 H 1.08992 * 109.47712 * 64.99346 * 17 15 13 35 35 H 0.96697 * 114.00407 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.00011 * 0.02562 * 20 19 15 37 37 H 1.08000 * 120.00219 * 180.27579 * 21 20 19 38 38 H 1.08000 * 119.99991 * 179.83238 * 22 21 20 39 39 H 1.08001 * 120.00150 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.00389 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.48133 * 176.42492 * 25 10 9 42 42 H 1.08997 * 109.48696 * 56.37738 * 25 10 9 43 43 H 1.08999 * 109.62455 * 248.38847 * 26 7 2 44 44 H 1.09002 * 109.62702 * 8.75876 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7038 1.3494 0.1307 5 1 1.9911 2.3383 -1.2726 6 1 1.7949 2.4514 1.1418 7 6 2.0045 -1.1940 -0.0005 8 6 3.4765 -1.2398 -0.3462 9 6 3.6901 -2.3044 -1.4274 10 6 3.1135 -3.6377 -0.9487 11 1 3.5744 -3.9120 0.0002 12 7 3.3956 -4.6755 -1.9434 13 6 3.4563 -5.9689 -1.5693 14 8 3.2770 -6.2736 -0.4092 15 6 3.7460 -7.0365 -2.5927 16 1 2.9743 -7.0210 -3.3624 17 6 5.1103 -6.7726 -3.2329 18 8 5.3341 -7.7153 -4.2832 19 6 3.7581 -8.3857 -1.9214 20 6 4.6627 -8.6459 -0.9091 21 6 4.6710 -9.8820 -0.2904 22 6 3.7807 -10.8610 -0.6903 23 6 2.8797 -10.6026 -1.7062 24 6 2.8685 -9.3650 -2.3219 25 6 1.6007 -3.5110 -0.7612 26 6 1.3084 -2.4918 0.3450 27 1 -0.4850 0.8400 -0.0004 28 1 4.0532 -1.4988 0.5417 29 1 3.7947 -0.2673 -0.7220 30 1 3.1856 -1.9981 -2.3438 31 1 4.7570 -2.4179 -1.6200 32 1 3.5388 -4.4318 -2.8713 33 1 5.1307 -5.7621 -3.6412 34 1 5.8912 -6.8758 -2.4796 35 1 6.1821 -7.6069 -4.7350 36 1 5.3605 -7.8821 -0.5989 37 1 5.3748 -10.0838 0.5035 38 1 3.7890 -11.8277 -0.2087 39 1 2.1844 -11.3675 -2.0189 40 1 2.1642 -9.1629 -3.1154 41 1 1.1866 -4.4797 -0.4816 42 1 1.1456 -3.1762 -1.6934 43 1 1.6844 -2.8668 1.2969 44 1 0.2339 -2.3231 0.4168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181925291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:22 Heat of formation + Delta-G solvation = -78.617949 kcal Electronic energy + Delta-G solvation = -24819.767302 eV Core-core repulsion = 21314.976071 eV Total energy + Delta-G solvation = -3504.791231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32911 -38.72252 -37.11064 -36.64417 -33.75818 -33.14913 -31.56215 -30.85760 -29.65046 -28.96636 -27.09150 -24.28535 -22.65186 -22.45311 -21.71445 -21.15888 -19.81906 -19.35557 -17.90653 -17.03512 -16.50910 -16.05132 -15.67215 -15.60476 -14.95863 -14.55226 -14.41973 -14.37520 -13.63688 -13.49659 -13.29298 -13.14875 -12.90285 -12.66357 -12.40591 -12.21695 -12.02771 -11.69506 -11.64834 -11.08359 -11.02210 -10.92626 -10.88163 -10.76929 -10.27344 -10.23386 -9.91471 -9.68501 -9.52362 -9.11709 -8.89964 -8.81501 -8.66182 -8.42387 -8.28806 -6.14895 -4.00546 1.38970 1.48927 2.79567 3.22843 3.34099 3.35654 3.39249 3.87243 4.09598 4.36199 4.48564 4.79305 4.90912 5.01417 5.06901 5.09644 5.13123 5.15574 5.25667 5.43931 5.56336 5.66520 5.70705 5.86968 6.00749 6.08276 6.14080 6.46855 6.48325 6.50097 6.54725 6.64734 6.68383 6.76206 6.81081 7.02487 7.03980 7.10142 7.22712 7.33673 7.37228 7.63971 7.73506 7.81442 7.87719 8.38057 8.50751 8.95306 9.52219 10.94868 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.003216 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.262390 B = 8704.334424 C = 9172.641785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.495 4.495 8 C -0.011 4.011 9 C -0.112 4.112 10 C 0.154 3.846 11 H 0.078 0.922 12 N -0.723 5.723 13 C 0.516 3.484 14 O -0.525 6.525 15 C -0.073 4.073 16 H 0.109 0.891 17 C 0.090 3.910 18 O -0.565 6.565 19 C -0.052 4.052 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.106 4.106 25 C -0.113 4.113 26 C 0.012 3.988 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.381 0.619 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.004 0.996 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.579 -15.848 -8.259 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.124 4.124 3 Si 0.707 3.293 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.514 4.514 8 C -0.049 4.049 9 C -0.150 4.150 10 C 0.052 3.948 11 H 0.096 0.904 12 N -0.373 5.373 13 C 0.300 3.700 14 O -0.400 6.400 15 C -0.094 4.094 16 H 0.127 0.873 17 C 0.012 3.988 18 O -0.371 6.371 19 C -0.052 4.052 20 C -0.104 4.104 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.124 4.124 25 C -0.151 4.151 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.226 0.774 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.681 -16.139 -7.206 20.153 hybrid contribution 0.869 1.315 -0.687 1.719 sum 10.550 -14.825 -7.892 19.833 Atomic orbital electron populations 1.69915 1.06321 1.26908 1.48674 1.24825 0.94541 0.98578 0.94433 0.86780 0.80989 0.83820 0.77738 1.18613 1.20981 1.21158 1.19999 0.92321 0.92427 1.46612 1.19704 0.97285 0.94232 0.93713 1.21845 0.97134 0.95163 1.00881 1.21078 0.97416 0.85566 0.90786 0.90426 1.46455 1.71718 1.06442 1.12695 1.20044 0.77684 0.83220 0.89077 1.90738 1.48840 1.81553 1.18912 1.20363 0.99174 0.92531 0.97337 0.87251 1.22050 0.95202 0.91835 0.89728 1.86496 1.42680 1.57306 1.50571 1.19128 0.96333 0.93372 0.96385 1.20858 0.98157 0.96373 0.95000 1.21060 0.99496 0.93615 0.99942 1.21087 0.96252 0.99140 0.97674 1.21031 0.99249 0.96904 0.97087 1.20960 0.98336 0.93323 0.99785 1.21927 0.93190 0.98588 1.01433 1.19355 0.99231 0.91997 0.92032 0.92631 0.96559 0.94581 0.92471 0.94486 0.77407 0.92646 0.92816 0.77227 0.86579 0.86311 0.86427 0.86286 0.86319 0.94809 0.93135 0.97752 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 12.81 55.43 0.71 -24.42 16 2 C 0.08 2.14 5.43 -17.82 -0.10 2.05 16 3 Si 0.88 20.45 27.63 -169.99 -4.70 15.75 16 4 H -0.26 -5.83 6.14 56.52 0.35 -5.48 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.49 -12.84 5.44 -98.92 -0.54 -13.38 16 8 C -0.01 -0.25 5.47 -27.48 -0.15 -0.40 16 9 C -0.11 -2.11 5.40 -26.64 -0.14 -2.25 16 10 C 0.15 2.95 2.35 -67.98 -0.16 2.79 16 11 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 12 N -0.72 -11.00 4.94 -53.86 -0.27 -11.27 16 13 C 0.52 8.14 6.99 -10.99 -0.08 8.07 16 14 O -0.52 -10.45 14.79 5.56 0.08 -10.37 16 15 C -0.07 -0.90 2.61 -92.92 -0.24 -1.15 16 16 H 0.11 1.25 7.88 -51.93 -0.41 0.84 16 17 C 0.09 0.88 6.26 37.16 0.23 1.11 16 18 O -0.57 -5.26 13.41 -35.23 -0.47 -5.74 16 19 C -0.05 -0.70 4.16 -104.62 -0.44 -1.14 16 20 C -0.09 -1.17 7.88 -39.59 -0.31 -1.48 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 23 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 24 C -0.11 -1.35 9.67 -39.59 -0.38 -1.73 16 25 C -0.11 -2.48 5.50 -26.63 -0.15 -2.63 16 26 C 0.01 0.30 5.99 -27.48 -0.16 0.14 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.80 5.02 -51.93 -0.26 0.54 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.39 4.76 7.96 -40.82 -0.32 4.44 16 33 H 0.06 0.45 7.43 -51.93 -0.39 0.06 16 34 H 0.05 0.52 7.21 -51.93 -0.37 0.15 16 35 H 0.38 1.78 9.12 45.56 0.42 2.20 16 36 H 0.12 1.55 7.49 -52.48 -0.39 1.16 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.31 7.95 -52.48 -0.42 0.89 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.06 1.58 7.11 -51.93 -0.37 1.21 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -32.13 353.30 -9.04 -41.17 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.91 Total: 5.08 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.81 Total: -15.52 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.44 Total: -35.69 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.39 Total: -16.11 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.70 Total: 15.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.13 -9.04 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181925291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds