Wall clock time and date at job start Tue Mar 31 2020 08:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99870 * 2 1 4 4 H 1.48504 * 109.46527 * 185.36323 * 3 2 1 5 5 H 1.48501 * 109.47056 * 65.36822 * 3 2 1 6 6 H 1.48490 * 109.47340 * 305.36503 * 3 2 1 7 7 C 1.37875 * 119.99673 * 180.02562 * 2 1 3 8 8 C 1.51273 * 120.84855 * 199.50839 * 7 2 1 9 9 C 1.53233 * 108.53622 * 231.32765 * 8 7 2 10 10 C 1.52963 * 109.40125 * 305.37080 * 9 8 7 11 11 H 1.09001 * 109.41041 * 303.49570 * 10 9 8 12 12 N 1.46493 * 109.41179 * 183.70718 * 10 9 8 13 13 C 1.34776 * 120.00187 * 155.00058 * 12 10 9 14 14 O 1.21290 * 119.99995 * 359.97438 * 13 12 10 15 15 C 1.50696 * 120.00454 * 179.97438 * 13 12 10 16 16 C 1.50695 * 109.47493 * 179.97438 * 15 13 12 17 17 C 1.38239 * 120.00245 * 269.72742 * 16 15 13 18 18 C 1.38234 * 120.00072 * 179.76589 * 17 16 15 19 19 C 1.38235 * 120.00034 * 0.48195 * 18 17 16 20 20 C 1.50695 * 120.00199 * 179.76954 * 19 18 17 21 21 O 1.42907 * 109.47191 * 270.02526 * 20 19 18 22 22 C 1.38238 * 119.99737 * 359.79357 * 19 18 17 23 23 C 1.38231 * 120.00419 * 359.95519 * 22 19 18 24 24 C 1.52956 * 109.81954 * 63.59678 * 10 9 8 25 25 C 1.51266 * 120.85334 * 19.22489 * 7 2 1 26 26 H 0.96996 * 120.00144 * 185.62486 * 1 2 3 27 27 H 1.09004 * 109.62499 * 351.03568 * 8 7 2 28 28 H 1.08997 * 109.62785 * 111.60850 * 8 7 2 29 29 H 1.08997 * 109.48444 * 65.34526 * 9 8 7 30 30 H 1.08999 * 109.48298 * 185.37588 * 9 8 7 31 31 H 0.97002 * 120.00315 * 334.99644 * 12 10 9 32 32 H 1.09001 * 109.47169 * 299.99999 * 15 13 12 33 33 H 1.08999 * 109.47223 * 59.99490 * 15 13 12 34 34 H 1.08006 * 119.99625 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.99750 * 180.25646 * 18 17 16 36 36 H 1.09002 * 109.47071 * 30.01863 * 20 19 18 37 37 H 1.08999 * 109.47471 * 150.01996 * 20 19 18 38 38 H 0.96704 * 114.00023 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99563 * 179.97438 * 22 19 18 40 40 H 1.07994 * 120.00277 * 180.02562 * 23 22 19 41 41 H 1.09008 * 109.48064 * 56.38063 * 24 10 9 42 42 H 1.09001 * 109.48475 * 176.40908 * 24 10 9 43 43 H 1.09002 * 109.62914 * 248.39279 * 25 7 2 44 44 H 1.09002 * 109.62475 * 8.96047 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3494 -0.1309 5 1 1.9912 2.3382 1.2727 6 1 1.7949 2.4516 -1.1416 7 6 2.0044 -1.1941 -0.0005 8 6 3.4524 -1.2540 0.4331 9 6 4.2564 -1.9778 -0.6521 10 6 3.6239 -3.3430 -0.9277 11 1 3.5731 -3.9126 0.0003 12 7 4.4422 -4.0713 -1.9004 13 6 4.4097 -5.4182 -1.9341 14 8 3.7033 -6.0274 -1.1589 15 6 5.2509 -6.1674 -2.9351 16 6 5.0344 -7.6490 -2.7646 17 6 5.8393 -8.3706 -1.9030 18 6 5.6375 -9.7287 -1.7429 19 6 4.6372 -10.3671 -2.4519 20 6 4.4206 -11.8486 -2.2814 21 8 5.2183 -12.5591 -3.2306 22 6 3.8360 -9.6465 -3.3178 23 6 4.0344 -8.2875 -3.4740 24 6 2.2129 -3.1572 -1.4880 25 6 1.3304 -2.4788 -0.4287 26 1 -0.4850 -0.8360 0.0823 27 1 3.8384 -0.2427 0.5614 28 1 3.5309 -1.8007 1.3728 29 1 4.2509 -1.3836 -1.5659 30 1 5.2834 -2.1144 -0.3135 31 1 5.0073 -3.5841 -2.5202 32 1 4.9643 -5.8718 -3.9443 33 1 6.3031 -5.9334 -2.7730 34 1 6.6237 -7.8725 -1.3523 35 1 6.2637 -10.2916 -1.0667 36 1 4.7076 -12.1440 -1.2722 37 1 3.3684 -12.0830 -2.4432 38 1 5.1291 -13.5206 -3.1781 39 1 3.0547 -10.1454 -3.8721 40 1 3.4081 -7.7245 -4.1501 41 1 2.2557 -2.5350 -2.3820 42 1 1.7915 -4.1299 -1.7419 43 1 1.2158 -3.1369 0.4326 44 1 0.3522 -2.2547 -0.8543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183693696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:47 Heat of formation + Delta-G solvation = -86.142538 kcal Electronic energy + Delta-G solvation = -24027.952894 eV Core-core repulsion = 20522.835372 eV Total energy + Delta-G solvation = -3505.117522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07142 -39.06391 -37.08844 -36.62840 -33.81265 -33.17771 -31.58871 -31.02677 -29.72259 -29.05677 -26.84857 -24.88552 -22.85363 -22.20847 -21.66935 -20.91087 -19.95641 -19.53518 -17.75909 -16.99791 -16.53843 -16.29216 -16.03310 -15.76343 -15.09113 -14.76309 -14.12554 -13.97357 -13.89750 -13.68591 -13.47723 -13.33525 -12.93665 -12.73544 -12.33140 -12.12398 -12.08661 -11.66269 -11.60123 -11.14956 -11.13763 -11.10051 -10.71725 -10.59490 -10.39800 -10.18882 -10.00834 -9.70684 -9.41557 -9.33409 -8.96738 -8.77992 -8.69461 -8.39549 -8.11089 -6.47319 -4.00564 1.13623 1.36162 2.92278 3.36851 3.39929 3.42217 3.54303 3.76076 4.20738 4.47389 4.57561 4.60903 4.79128 4.90240 4.92494 5.09823 5.12814 5.18105 5.26470 5.34073 5.40635 5.58605 5.65950 5.82840 5.88719 5.96954 6.12847 6.27860 6.41050 6.45356 6.46863 6.50839 6.66104 6.75152 6.75390 6.89360 6.94011 7.07376 7.17773 7.26329 7.32892 7.37677 7.60822 7.88250 8.08408 8.36608 8.56607 8.85426 9.58929 10.89261 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037524 B = 0.002544 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.007763 B =11001.546536 C =11320.101674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 1.053 2.947 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.575 4.575 8 C -0.010 4.010 9 C -0.114 4.114 10 C 0.157 3.843 11 H 0.076 0.924 12 N -0.727 5.727 13 C 0.509 3.491 14 O -0.535 6.535 15 C -0.107 4.107 16 C -0.052 4.052 17 C -0.109 4.109 18 C -0.098 4.098 19 C -0.100 4.100 20 C 0.118 3.882 21 O -0.569 6.569 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.111 4.111 25 C 0.008 3.992 26 H 0.274 0.726 27 H 0.040 0.960 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.393 0.607 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.378 0.622 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.005 0.995 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.594 -18.169 -7.554 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.167 4.167 3 Si 0.882 3.118 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.594 4.594 8 C -0.048 4.048 9 C -0.153 4.153 10 C 0.054 3.946 11 H 0.094 0.906 12 N -0.377 5.377 13 C 0.294 3.706 14 O -0.411 6.411 15 C -0.147 4.147 16 C -0.052 4.052 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.100 4.100 20 C 0.041 3.959 21 O -0.374 6.374 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.030 4.030 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.226 0.774 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.026 -16.357 -7.216 21.546 hybrid contribution 0.219 -1.943 -0.101 1.958 sum 12.245 -18.300 -7.317 23.202 Atomic orbital electron populations 1.70723 1.07268 1.31033 1.44144 1.25711 0.95959 1.01799 0.93249 0.83819 0.75430 0.75430 0.77156 1.20304 1.21462 1.21452 1.20974 0.95655 0.94224 1.48511 1.19740 0.95510 0.96142 0.93451 1.21904 0.97131 0.94802 1.01455 1.20980 0.90530 0.92167 0.90942 0.90633 1.46423 1.46742 1.06027 1.38480 1.20399 0.82805 0.82647 0.84762 1.90726 1.41201 1.67885 1.41302 1.20740 1.01515 0.92054 1.00341 1.19345 0.95694 0.93777 0.96421 1.20955 0.99779 0.93991 0.97946 1.20940 0.96954 0.94533 0.99212 1.19545 0.97543 0.94148 0.98774 1.20976 0.94270 0.88806 0.91851 1.86576 1.68952 1.22613 1.59294 1.20951 0.99122 0.94053 0.97460 1.20971 0.97241 0.94458 0.99899 1.21972 0.94907 0.98171 0.99942 1.19424 0.95188 0.95035 0.93335 0.91515 0.94202 0.96839 0.92669 0.94614 0.77363 0.88072 0.88132 0.86033 0.86120 0.92777 0.92756 0.77498 0.86090 0.85980 0.93277 0.94807 0.97631 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.48 55.43 0.75 -25.70 16 2 C 0.04 1.07 5.41 -17.82 -0.10 0.98 16 3 Si 1.05 24.14 28.17 -169.99 -4.79 19.35 16 4 H -0.28 -5.83 5.93 56.52 0.33 -5.50 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.58 -15.10 5.38 -98.92 -0.53 -15.64 16 8 C -0.01 -0.24 5.69 -27.48 -0.16 -0.39 16 9 C -0.11 -2.23 5.40 -26.63 -0.14 -2.37 16 10 C 0.16 3.08 2.35 -67.98 -0.16 2.92 16 11 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 12 N -0.73 -11.24 5.07 -53.85 -0.27 -11.51 16 13 C 0.51 8.03 7.78 -10.99 -0.09 7.95 16 14 O -0.53 -10.92 15.70 5.55 0.09 -10.83 16 15 C -0.11 -1.19 5.83 -29.04 -0.17 -1.36 16 16 C -0.05 -0.66 4.37 -104.62 -0.46 -1.12 16 17 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 18 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 19 C -0.10 -1.16 5.51 -104.63 -0.58 -1.74 16 20 C 0.12 1.03 7.17 36.00 0.26 1.29 16 21 O -0.57 -5.05 13.64 -35.23 -0.48 -5.53 16 22 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 23 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16 24 C -0.11 -2.44 5.52 -26.41 -0.15 -2.58 16 25 C 0.01 0.21 5.67 -27.26 -0.15 0.06 16 26 H 0.27 8.08 7.06 -40.82 -0.29 7.79 16 27 H 0.04 0.89 4.67 -51.93 -0.24 0.65 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.39 4.75 8.60 -40.82 -0.35 4.40 16 32 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 37 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.38 1.41 9.12 45.56 0.42 1.82 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.03 0.89 6.62 -51.93 -0.34 0.54 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -33.86 358.17 -9.24 -43.10 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.97 Total: 4.23 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.96 Total: -18.51 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.47 Total: -37.20 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.39 Total: -16.36 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.79 Total: 19.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.86 -9.24 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183693696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.041 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds