Wall clock time and date at job start Tue Mar 31 2020 08:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99870 * 2 1 4 4 H 1.48504 * 109.46527 * 185.36323 * 3 2 1 5 5 H 1.48501 * 109.47056 * 65.36822 * 3 2 1 6 6 H 1.48490 * 109.47340 * 305.36503 * 3 2 1 7 7 C 1.37875 * 119.99673 * 180.02562 * 2 1 3 8 8 C 1.51273 * 120.84855 * 199.50839 * 7 2 1 9 9 C 1.53233 * 108.53622 * 231.32765 * 8 7 2 10 10 C 1.52963 * 109.40125 * 305.37080 * 9 8 7 11 11 H 1.09001 * 109.41041 * 303.49570 * 10 9 8 12 12 N 1.46493 * 109.41179 * 183.70718 * 10 9 8 13 13 C 1.34776 * 120.00187 * 155.00058 * 12 10 9 14 14 O 1.21290 * 119.99995 * 359.97438 * 13 12 10 15 15 C 1.50696 * 120.00454 * 179.97438 * 13 12 10 16 16 C 1.50695 * 109.47493 * 179.97438 * 15 13 12 17 17 C 1.38239 * 120.00245 * 269.72742 * 16 15 13 18 18 C 1.38234 * 120.00072 * 179.76589 * 17 16 15 19 19 C 1.38235 * 120.00034 * 0.48195 * 18 17 16 20 20 C 1.50695 * 120.00199 * 179.76954 * 19 18 17 21 21 O 1.42907 * 109.47191 * 270.02526 * 20 19 18 22 22 C 1.38238 * 119.99737 * 359.79357 * 19 18 17 23 23 C 1.38231 * 120.00419 * 359.95519 * 22 19 18 24 24 C 1.52956 * 109.81954 * 63.59678 * 10 9 8 25 25 C 1.51266 * 120.85334 * 19.22489 * 7 2 1 26 26 H 0.96996 * 120.00144 * 185.62486 * 1 2 3 27 27 H 1.09004 * 109.62499 * 351.03568 * 8 7 2 28 28 H 1.08997 * 109.62785 * 111.60850 * 8 7 2 29 29 H 1.08997 * 109.48444 * 65.34526 * 9 8 7 30 30 H 1.08999 * 109.48298 * 185.37588 * 9 8 7 31 31 H 0.97002 * 120.00315 * 334.99644 * 12 10 9 32 32 H 1.09001 * 109.47169 * 299.99999 * 15 13 12 33 33 H 1.08999 * 109.47223 * 59.99490 * 15 13 12 34 34 H 1.08006 * 119.99625 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.99750 * 180.25646 * 18 17 16 36 36 H 1.09002 * 109.47071 * 30.01863 * 20 19 18 37 37 H 1.08999 * 109.47471 * 150.01996 * 20 19 18 38 38 H 0.96704 * 114.00023 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99563 * 179.97438 * 22 19 18 40 40 H 1.07994 * 120.00277 * 180.02562 * 23 22 19 41 41 H 1.09008 * 109.48064 * 56.38063 * 24 10 9 42 42 H 1.09001 * 109.48475 * 176.40908 * 24 10 9 43 43 H 1.09002 * 109.62914 * 248.39279 * 25 7 2 44 44 H 1.09002 * 109.62475 * 8.96047 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3494 -0.1309 5 1 1.9912 2.3382 1.2727 6 1 1.7949 2.4516 -1.1416 7 6 2.0044 -1.1941 -0.0005 8 6 3.4524 -1.2540 0.4331 9 6 4.2564 -1.9778 -0.6521 10 6 3.6239 -3.3430 -0.9277 11 1 3.5731 -3.9126 0.0003 12 7 4.4422 -4.0713 -1.9004 13 6 4.4097 -5.4182 -1.9341 14 8 3.7033 -6.0274 -1.1589 15 6 5.2509 -6.1674 -2.9351 16 6 5.0344 -7.6490 -2.7646 17 6 5.8393 -8.3706 -1.9030 18 6 5.6375 -9.7287 -1.7429 19 6 4.6372 -10.3671 -2.4519 20 6 4.4206 -11.8486 -2.2814 21 8 5.2183 -12.5591 -3.2306 22 6 3.8360 -9.6465 -3.3178 23 6 4.0344 -8.2875 -3.4740 24 6 2.2129 -3.1572 -1.4880 25 6 1.3304 -2.4788 -0.4287 26 1 -0.4850 -0.8360 0.0823 27 1 3.8384 -0.2427 0.5614 28 1 3.5309 -1.8007 1.3728 29 1 4.2509 -1.3836 -1.5659 30 1 5.2834 -2.1144 -0.3135 31 1 5.0073 -3.5841 -2.5202 32 1 4.9643 -5.8718 -3.9443 33 1 6.3031 -5.9334 -2.7730 34 1 6.6237 -7.8725 -1.3523 35 1 6.2637 -10.2916 -1.0667 36 1 4.7076 -12.1440 -1.2722 37 1 3.3684 -12.0830 -2.4432 38 1 5.1291 -13.5206 -3.1781 39 1 3.0547 -10.1454 -3.8721 40 1 3.4081 -7.7245 -4.1501 41 1 2.2557 -2.5350 -2.3820 42 1 1.7915 -4.1299 -1.7419 43 1 1.2158 -3.1369 0.4326 44 1 0.3522 -2.2547 -0.8543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183693696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:46 Heat of formation + Delta-G solvation = -109.827262 kcal Electronic energy + Delta-G solvation = -24028.979940 eV Core-core repulsion = 20522.835372 eV Total energy + Delta-G solvation = -3506.144569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19220 -40.14353 -38.52565 -37.54354 -35.51254 -34.13030 -33.28757 -31.88048 -31.55047 -30.12773 -28.44312 -25.80615 -24.02745 -23.71384 -23.34243 -22.00907 -21.45256 -21.01115 -18.64707 -18.37641 -17.85227 -17.59015 -16.95701 -16.89271 -16.13471 -15.92781 -15.69857 -15.62794 -14.83884 -14.80065 -14.65121 -14.44460 -14.29931 -14.17544 -13.72825 -13.51882 -13.40361 -13.00433 -12.87554 -12.84213 -12.53993 -12.34804 -11.95852 -11.94581 -11.93939 -11.82434 -11.42029 -11.13374 -11.00323 -10.88137 -10.63131 -10.25441 -9.88979 -9.84287 -9.61459 -8.62750 -6.15283 0.26306 0.48186 1.55864 1.62376 1.70512 1.77473 2.25109 2.59604 2.79685 3.10484 3.54001 3.70689 3.82889 3.92862 4.05203 4.10635 4.16415 4.16886 4.20890 4.42926 4.49462 4.52614 4.54796 4.60891 4.62469 4.76717 4.81368 4.90210 4.97627 5.04107 5.12896 5.13609 5.16933 5.21984 5.27477 5.41412 5.45701 5.61025 5.62139 5.64389 5.71224 6.03195 6.05264 6.27720 6.67880 6.71660 6.88562 7.37152 7.53139 8.72480 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037524 B = 0.002544 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.007763 B =11001.546536 C =11320.101674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 1.095 2.905 4 H -0.239 1.239 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.582 4.582 8 C -0.016 4.016 9 C -0.106 4.106 10 C 0.168 3.832 11 H 0.046 0.954 12 N -0.713 5.713 13 C 0.507 3.493 14 O -0.587 6.587 15 C -0.093 4.093 16 C -0.072 4.072 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.114 4.114 20 C 0.119 3.881 21 O -0.587 6.587 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.098 4.098 25 C 0.003 3.997 26 H 0.256 0.744 27 H 0.053 0.947 28 H 0.005 0.995 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.415 0.585 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.054 0.946 42 H 0.024 0.976 43 H -0.018 1.018 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.866 -18.240 -8.731 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.215 4.215 3 Si 0.917 3.083 4 H -0.163 1.163 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.600 4.600 8 C -0.055 4.055 9 C -0.144 4.144 10 C 0.064 3.936 11 H 0.064 0.936 12 N -0.365 5.365 13 C 0.295 3.705 14 O -0.466 6.466 15 C -0.133 4.133 16 C -0.072 4.072 17 C -0.140 4.140 18 C -0.129 4.129 19 C -0.114 4.114 20 C 0.042 3.958 21 O -0.397 6.397 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.035 4.035 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.001 0.999 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 15.349 -16.459 -8.425 24.030 hybrid contribution -0.864 -2.081 0.301 2.273 sum 14.485 -18.539 -8.124 24.890 Atomic orbital electron populations 1.70862 1.08664 1.29964 1.47634 1.27171 0.95905 1.05727 0.92708 0.83327 0.76370 0.71515 0.77049 1.16260 1.21386 1.21457 1.21489 0.97581 0.93914 1.47057 1.19770 0.93942 0.97447 0.94303 1.21759 0.98086 0.93827 1.00709 1.20528 0.89768 0.92717 0.90617 0.93605 1.46118 1.46256 1.06127 1.38001 1.21234 0.82234 0.82424 0.84624 1.90715 1.43500 1.68849 1.43578 1.20747 1.02303 0.90325 0.99887 1.19594 0.96048 0.94701 0.96865 1.21254 1.00239 0.94479 0.97984 1.21262 0.97327 0.94780 0.99559 1.19979 0.97214 0.95897 0.98300 1.20988 0.94989 0.87247 0.92559 1.86509 1.69101 1.24623 1.59447 1.21239 0.99731 0.94217 0.97913 1.21234 0.97590 0.95048 1.00425 1.21781 0.96032 0.97166 0.98770 1.19430 0.95030 0.95394 0.93620 0.93420 0.92898 0.97674 0.91281 0.91157 0.74756 0.85373 0.84791 0.84680 0.84462 0.91361 0.91594 0.75029 0.84803 0.85301 0.92690 0.95695 0.99926 0.97503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.48 21.45 0.29 -56.73 16 2 C -0.02 -0.91 5.41 84.65 0.46 -0.45 16 3 Si 1.09 47.47 28.17 68.60 1.93 49.40 16 4 H -0.24 -8.81 5.93 99.48 0.59 -8.22 16 5 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.58 -30.72 5.38 -16.17 -0.09 -30.81 16 8 C -0.02 -0.73 5.69 30.11 0.17 -0.56 16 9 C -0.11 -3.75 5.40 30.66 0.17 -3.59 16 10 C 0.17 6.38 2.35 44.97 0.11 6.49 16 11 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 12 N -0.71 -20.05 5.07 -442.67 -2.25 -22.29 16 13 C 0.51 15.02 7.78 87.66 0.68 15.70 16 14 O -0.59 -23.87 15.70 -3.06 -0.05 -23.92 16 15 C -0.09 -1.79 5.83 29.10 0.17 -1.62 16 16 C -0.07 -1.70 4.37 -19.87 -0.09 -1.79 16 17 C -0.12 -2.79 9.70 22.27 0.22 -2.57 16 18 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 19 C -0.11 -2.53 5.51 -19.87 -0.11 -2.64 16 20 C 0.12 1.90 7.17 71.23 0.51 2.41 16 21 O -0.59 -9.46 13.64 -148.98 -2.03 -11.49 16 22 C -0.11 -2.61 9.70 22.27 0.22 -2.39 16 23 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 24 C -0.10 -4.35 5.52 30.80 0.17 -4.18 16 25 C 0.00 0.18 5.67 30.25 0.17 0.35 16 26 H 0.26 16.01 7.06 -92.71 -0.65 15.36 16 27 H 0.05 2.18 4.67 -2.38 -0.01 2.17 16 28 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.42 8.19 8.60 -92.71 -0.80 7.39 16 32 H 0.13 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 37 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 38 H 0.40 2.23 9.12 -74.05 -0.68 1.56 16 39 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.01 0.36 6.62 -2.39 -0.02 0.35 16 Total: -1.00 -76.78 358.17 0.62 -76.16 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.46 Total: 19.56 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.19 Total: -30.69 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.96 Total: -79.02 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -2.08 Total: -35.41 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.93 Total: 49.40 kcal Total: -76.78 0.62 -76.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183693696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.671 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds