Wall clock time and date at job start Tue Mar 31 2020 08:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86797 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47452 * 274.98921 * 3 2 1 5 5 H 1.48509 * 109.47172 * 34.98878 * 3 2 1 6 6 H 1.48500 * 109.47326 * 154.98719 * 3 2 1 7 7 C 1.39924 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99673 * 151.89642 * 7 2 1 9 9 C 1.41407 * 120.00443 * 331.89717 * 7 2 1 10 10 C 1.40785 * 120.20613 * 337.88034 * 9 7 2 11 11 C 1.37639 * 119.88249 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32243 * 359.74772 * 11 10 9 13 13 C 1.39246 * 120.43054 * 0.50748 * 12 11 10 14 14 N 1.39943 * 119.94641 * 179.76131 * 13 12 11 15 15 C 1.34776 * 120.00366 * 321.03604 * 14 13 12 16 16 O 1.21288 * 119.99686 * 354.71691 * 15 14 13 17 17 C 1.50700 * 119.99933 * 174.72183 * 15 14 13 18 18 H 1.08999 * 109.47093 * 59.99878 * 17 15 14 19 19 C 1.53001 * 109.46849 * 299.99685 * 17 15 14 20 20 C 1.52998 * 109.47290 * 300.00084 * 19 17 15 21 21 C 1.52998 * 109.47387 * 300.00297 * 20 19 17 22 22 C 1.53001 * 109.47148 * 59.99616 * 21 20 19 23 23 C 1.52998 * 109.46814 * 180.02562 * 17 15 14 24 24 H 1.09001 * 109.46706 * 179.97438 * 23 17 15 25 25 C 1.52997 * 109.47434 * 299.99703 * 23 17 15 26 26 O 1.42897 * 109.47282 * 185.00347 * 25 23 17 27 27 C 1.38281 * 120.10658 * 359.49591 * 13 12 11 28 28 H 0.97000 * 120.00659 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05913 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.83619 * 180.02562 * 11 10 9 31 31 H 1.08006 * 119.78770 * 180.25530 * 12 11 10 32 32 H 0.96998 * 119.99259 * 141.03487 * 14 13 12 33 33 H 1.09005 * 109.47184 * 60.00281 * 19 17 15 34 34 H 1.09001 * 109.47099 * 180.02562 * 19 17 15 35 35 H 1.08997 * 109.47161 * 60.00452 * 20 19 17 36 36 H 1.08999 * 109.47205 * 179.97438 * 20 19 17 37 37 H 1.08999 * 109.47397 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46706 * 299.99883 * 21 20 19 39 39 H 1.08999 * 109.46773 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.46650 * 60.00305 * 22 21 20 41 41 H 1.09007 * 109.46621 * 305.00289 * 25 23 17 42 42 H 1.08996 * 109.46878 * 64.99929 * 25 23 17 43 43 H 0.96698 * 113.99864 * 180.02562 * 26 25 23 44 44 H 1.07993 * 120.16195 * 180.23104 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1074 -1.3947 5 1 1.4963 2.6200 0.8029 6 1 3.5885 1.4122 0.5920 7 6 2.0080 -1.2118 -0.0005 8 1 2.9925 -1.2666 -0.4412 9 6 1.4261 -2.3645 0.5758 10 6 0.4029 -2.2376 1.5344 11 6 -0.1592 -3.3642 2.0907 12 6 0.2734 -4.6234 1.7082 13 6 1.2881 -4.7642 0.7651 14 7 1.7207 -6.0411 0.3897 15 6 1.8278 -7.0153 1.3148 16 8 1.6423 -6.7622 2.4864 17 6 2.1782 -8.4192 0.8935 18 1 3.1493 -8.4182 0.3983 19 6 1.1135 -8.9423 -0.0728 20 6 -0.2495 -8.9436 0.6223 21 6 -0.1922 -9.8469 1.8558 22 6 0.8725 -9.3238 2.8220 23 6 2.2349 -9.3226 2.1269 24 1 2.4879 -10.3381 1.8221 25 6 3.2992 -8.7997 3.0937 26 8 3.4340 -9.7067 4.1897 27 6 1.8653 -3.6445 0.1948 28 1 -0.4851 0.8400 0.0004 29 1 0.0596 -1.2581 1.8328 30 1 -0.9444 -3.2660 2.8257 31 1 -0.1766 -5.5016 2.1472 32 1 1.9434 -6.2248 -0.5363 33 1 1.0726 -8.2988 -0.9516 34 1 1.3667 -9.9579 -0.3772 35 1 -0.5030 -7.9283 0.9270 36 1 -1.0081 -9.3159 -0.0662 37 1 -1.1634 -9.8482 2.3507 38 1 0.0612 -10.8623 1.5510 39 1 0.9136 -9.9676 3.7006 40 1 0.6191 -8.3084 3.1267 41 1 4.2530 -8.7149 2.5727 42 1 3.0009 -7.8202 3.4672 43 1 4.0932 -9.4376 4.8440 44 1 2.6498 -3.7527 -0.5394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184162103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:03 Heat of formation + Delta-G solvation = -87.786481 kcal Electronic energy + Delta-G solvation = -25194.861804 eV Core-core repulsion = 21689.672996 eV Total energy + Delta-G solvation = -3505.188809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73535 -38.15667 -36.79479 -36.19123 -34.49872 -33.19435 -31.58612 -30.99986 -29.87538 -28.13315 -25.63343 -25.24319 -23.57565 -21.72842 -21.27989 -20.91734 -20.25936 -19.13063 -17.64041 -17.16165 -16.36501 -15.89855 -15.52011 -15.07957 -14.99899 -14.76746 -14.45732 -13.98601 -13.75223 -13.65775 -13.13084 -12.97328 -12.69228 -12.34350 -12.26065 -12.11165 -11.95082 -11.66584 -11.59748 -11.37946 -11.10367 -10.98609 -10.73178 -10.67319 -10.55303 -10.17206 -10.10165 -10.06280 -9.82532 -9.64925 -9.32602 -8.98280 -8.80020 -7.52463 -6.96573 -6.88275 -4.36133 2.57214 2.79266 3.05304 3.08687 3.18269 3.33139 3.62799 3.90572 4.15093 4.55165 4.61678 4.69184 4.88268 5.08962 5.09595 5.27379 5.39467 5.43124 5.45268 5.52836 5.65735 5.66825 5.71704 5.84922 5.94617 6.08727 6.17355 6.23258 6.27236 6.30684 6.41676 6.50654 6.66583 6.80847 6.90774 6.99258 7.04332 7.19118 7.58408 7.66726 7.68250 7.94416 8.00289 8.10952 8.29541 8.55146 8.71030 8.85480 8.95247 10.08685 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.003332 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.780723 B = 8401.946086 C = 8688.219155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.086 3.914 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.470 4.470 8 H 0.079 0.921 9 C 0.126 3.874 10 C -0.176 4.176 11 C -0.091 4.091 12 C -0.228 4.228 13 C 0.158 3.842 14 N -0.668 5.668 15 C 0.513 3.487 16 O -0.516 6.516 17 C -0.105 4.105 18 H 0.094 0.906 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.058 4.058 24 H 0.075 0.925 25 C 0.065 3.935 26 O -0.576 6.576 27 C -0.249 4.249 28 H 0.282 0.718 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.375 0.625 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -14.661 0.144 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.097 0.903 9 C 0.122 3.878 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.249 4.249 13 C 0.067 3.933 14 N -0.311 5.311 15 C 0.300 3.700 16 O -0.392 6.392 17 C -0.126 4.126 18 H 0.112 0.888 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.077 4.077 24 H 0.094 0.906 25 C -0.012 4.012 26 O -0.381 6.381 27 C -0.271 4.271 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.222 0.778 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.182 -14.686 0.625 14.861 hybrid contribution 0.950 1.043 -0.367 1.457 sum 3.132 -13.644 0.258 14.001 Atomic orbital electron populations 1.69898 1.07895 1.29618 1.32785 1.25884 0.94440 1.01346 0.91785 0.86471 0.81288 0.80944 0.79090 1.19561 1.19928 1.18257 1.19472 1.02956 0.92862 1.34597 0.90316 1.17320 0.90058 0.91151 0.89227 1.21167 1.01543 0.96999 0.99871 1.20522 0.98797 0.92752 0.98926 1.20153 1.02335 0.96446 1.05979 1.17389 0.95168 0.82124 0.98615 1.43552 1.66232 1.10193 1.11153 1.20484 0.77101 0.86300 0.86071 1.90593 1.48745 1.82466 1.17379 1.21388 1.00840 0.92557 0.97863 0.88785 1.21499 0.94307 1.01610 0.97047 1.21591 0.96448 1.01036 0.97214 1.21535 0.99239 0.98578 0.96129 1.21775 0.92737 1.04084 0.97644 1.20792 0.96062 0.98022 0.92853 0.90623 1.22610 0.96695 0.94120 0.87810 1.86394 1.64102 1.51194 1.36455 1.20664 1.06893 0.91510 1.08006 0.90717 0.87302 0.89170 0.88659 0.76760 0.91230 0.90878 0.91458 0.91841 0.92180 0.92535 0.91827 0.88823 0.94870 0.90160 0.77839 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.78 11.48 55.55 0.64 -19.14 16 2 C 0.09 2.12 4.90 -17.35 -0.08 2.03 16 3 Si 0.90 18.25 29.64 -169.99 -5.04 13.21 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.47 -12.29 8.99 -37.75 -0.34 -12.63 16 8 H 0.08 1.98 7.98 -52.48 -0.42 1.56 16 9 C 0.13 3.31 5.57 -106.85 -0.60 2.71 16 10 C -0.18 -4.59 8.76 -38.84 -0.34 -4.93 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.23 -5.31 8.66 -39.10 -0.34 -5.65 16 13 C 0.16 3.50 6.15 -83.76 -0.52 2.98 16 14 N -0.67 -11.42 5.17 -9.91 -0.05 -11.47 16 15 C 0.51 8.28 5.06 -10.99 -0.06 8.23 16 16 O -0.52 -9.99 9.44 5.55 0.05 -9.94 16 17 C -0.10 -1.25 2.55 -91.77 -0.23 -1.48 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.11 -1.09 5.36 -26.73 -0.14 -1.24 16 20 C -0.13 -1.46 5.70 -26.73 -0.15 -1.62 16 21 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 22 C -0.13 -1.69 4.83 -26.76 -0.13 -1.82 16 23 C -0.06 -0.73 2.17 -90.65 -0.20 -0.93 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 C 0.06 0.85 6.05 37.16 0.22 1.08 16 26 O -0.58 -7.21 13.19 -35.23 -0.46 -7.67 16 27 C -0.25 -5.96 9.71 -38.68 -0.38 -6.34 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.11 2.90 6.38 -52.49 -0.33 2.56 16 30 H 0.09 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.10 2.17 6.82 -52.48 -0.36 1.81 16 32 H 0.40 5.54 8.41 -40.82 -0.34 5.20 16 33 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.97 7.22 -51.93 -0.37 0.60 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 40 H 0.09 1.54 5.51 -51.93 -0.29 1.26 16 41 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.08 1.26 5.64 -51.93 -0.29 0.97 16 43 H 0.38 3.11 9.12 45.56 0.42 3.52 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -29.86 344.63 -9.24 -39.10 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.74 Total: 14.42 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.83 Total: -23.71 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.59 Total: -30.61 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.41 Total: -17.61 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.04 Total: 13.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.86 -9.24 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184162103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.682 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds