Wall clock time and date at job start Tue Mar 31 2020 08:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48504 * 109.47187 * 174.65836 * 3 2 1 5 5 H 1.48499 * 109.46803 * 294.65823 * 3 2 1 6 6 H 1.48499 * 109.47056 * 54.65682 * 3 2 1 7 7 C 1.37875 * 119.99808 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85608 * 349.20502 * 7 2 1 9 9 C 1.53229 * 108.53888 * 231.32808 * 8 7 2 10 10 C 1.52958 * 109.40146 * 305.36838 * 9 8 7 11 11 H 1.08997 * 109.41740 * 303.56537 * 10 9 8 12 12 N 1.46496 * 109.41104 * 183.70627 * 10 9 8 13 13 C 1.34781 * 119.99939 * 154.85875 * 12 10 9 14 14 O 1.21276 * 120.00165 * 0.02562 * 13 12 10 15 15 C 1.50695 * 119.99903 * 179.97438 * 13 12 10 16 16 C 1.53001 * 109.47414 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.47031 * 54.99506 * 16 15 13 18 18 O 1.42904 * 109.47097 * 295.00373 * 16 15 13 19 19 C 1.50701 * 109.47901 * 175.00016 * 16 15 13 20 20 C 1.38233 * 119.99875 * 265.00240 * 19 16 15 21 21 C 1.38231 * 119.99635 * 179.97438 * 20 19 16 22 22 C 1.38234 * 120.00364 * 0.27516 * 21 20 19 23 23 C 1.38244 * 119.99737 * 359.51423 * 22 21 20 24 24 C 1.38231 * 119.99684 * 0.44136 * 23 22 21 25 25 C 1.52959 * 109.75902 * 63.63591 * 10 9 8 26 26 C 1.51271 * 120.84610 * 169.18219 * 7 2 1 27 27 H 0.96996 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.62620 * 111.60737 * 8 7 2 29 29 H 1.08999 * 109.61982 * 351.04119 * 8 7 2 30 30 H 1.08995 * 109.48041 * 185.39212 * 9 8 7 31 31 H 1.08998 * 109.48366 * 65.34467 * 9 8 7 32 32 H 0.96998 * 120.00656 * 334.85875 * 12 10 9 33 33 H 1.09004 * 109.47583 * 60.00101 * 15 13 12 34 34 H 1.09005 * 109.47586 * 299.99860 * 15 13 12 35 35 H 0.96705 * 113.99505 * 299.99938 * 18 16 15 36 36 H 1.07994 * 120.00409 * 359.97344 * 20 19 16 37 37 H 1.07998 * 120.00225 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00495 * 179.72227 * 22 21 20 39 39 H 1.07998 * 119.99977 * 180.27320 * 23 22 21 40 40 H 1.08006 * 119.99655 * 179.83669 * 24 23 22 41 41 H 1.09000 * 109.48286 * 56.34451 * 25 10 9 42 42 H 1.09002 * 109.48005 * 176.38234 * 25 10 9 43 43 H 1.09005 * 109.62755 * 248.38686 * 26 7 2 44 44 H 1.08996 * 109.63036 * 8.76989 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3495 0.1303 5 1 1.9907 2.3384 -1.2724 6 1 1.7952 2.4514 1.1420 7 6 2.0045 -1.1941 0.0005 8 6 1.2877 -2.5036 0.2443 9 6 2.0265 -3.2650 1.3500 10 6 3.4996 -3.4148 0.9666 11 1 3.5736 -3.9113 -0.0009 12 7 4.1872 -4.2184 1.9802 13 6 5.2999 -4.9058 1.6544 14 8 5.7321 -4.8587 0.5223 15 6 6.0075 -5.7321 2.6972 16 6 7.2313 -6.4041 2.0714 17 1 7.8666 -5.6467 1.6123 18 8 6.8056 -7.3362 1.0754 19 6 8.0072 -7.1302 3.1400 20 6 9.0758 -6.5102 3.7601 21 6 9.7872 -7.1761 4.7406 22 6 9.4335 -8.4640 5.0970 23 6 8.3621 -9.0824 4.4799 24 6 7.6502 -8.4162 3.5001 25 6 4.1546 -2.0351 0.8813 26 6 3.4971 -1.2281 -0.2432 27 1 -0.4850 0.8400 -0.0004 28 1 1.2866 -3.0962 -0.6705 29 1 0.2624 -2.3068 0.5576 30 1 1.5805 -4.2520 1.4721 31 1 1.9489 -2.7123 2.2862 32 1 3.8418 -4.2560 2.8858 33 1 5.3287 -6.4951 3.0784 34 1 6.3265 -5.0877 3.5165 35 1 6.2353 -8.0401 1.4136 36 1 9.3549 -5.5057 3.4785 37 1 10.6218 -6.6916 5.2254 38 1 9.9921 -8.9859 5.8599 39 1 8.0831 -10.0870 4.7614 40 1 6.8148 -8.9004 3.0161 41 1 4.0255 -1.5122 1.8290 42 1 5.2180 -2.1500 0.6712 43 1 3.7006 -1.7027 -1.2032 44 1 3.8908 -0.2117 -0.2466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185802530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:51 Heat of formation + Delta-G solvation = -80.842260 kcal Electronic energy + Delta-G solvation = -24257.858083 eV Core-core repulsion = 20752.970399 eV Total energy + Delta-G solvation = -3504.887685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20050 -39.23622 -37.21701 -36.35784 -33.64991 -32.39214 -31.58927 -31.16554 -29.92495 -29.61867 -27.14866 -24.63629 -22.89740 -22.22798 -21.50829 -21.19188 -19.95798 -19.47871 -18.02022 -16.79456 -16.32253 -16.02471 -16.00396 -15.44908 -15.07800 -14.89627 -14.45258 -13.99145 -13.86716 -13.68110 -13.50118 -13.16039 -12.91638 -12.72368 -12.35758 -12.13287 -12.02445 -11.92734 -11.59986 -11.45191 -11.19830 -10.99151 -10.81565 -10.72973 -10.32181 -10.14956 -9.99496 -9.57011 -9.38876 -9.24967 -9.08387 -8.95890 -8.81006 -8.42065 -8.24413 -6.11607 -3.99976 0.99074 1.07274 2.98181 3.26460 3.36683 3.36903 3.38031 3.58994 4.31033 4.38765 4.39453 4.53692 4.63279 4.73085 4.79211 4.96157 5.12136 5.16346 5.20064 5.31578 5.42105 5.58283 5.64337 5.76109 5.77531 5.91846 6.12506 6.18445 6.21813 6.28928 6.48587 6.51176 6.65574 6.72845 6.79976 6.90957 6.97664 7.16538 7.28953 7.47117 7.50987 7.63160 7.74119 7.77745 7.96911 8.38687 8.63154 8.96029 9.55025 10.97974 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.002661 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.137231 B =10519.159507 C =10835.607597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.488 4.488 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.154 3.846 11 H 0.078 0.922 12 N -0.728 5.728 13 C 0.507 3.493 14 O -0.528 6.528 15 C -0.171 4.171 16 C 0.166 3.834 17 H 0.115 0.885 18 O -0.536 6.536 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.024 4.024 27 H 0.263 0.737 28 H 0.007 0.993 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.392 0.608 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.366 0.634 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.019 0.981 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.878 -15.548 12.507 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.507 4.507 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.051 3.949 11 H 0.096 0.904 12 N -0.378 5.378 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.212 4.212 16 C 0.106 3.894 17 H 0.132 0.868 18 O -0.340 6.340 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.151 4.151 26 C -0.062 4.062 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.213 0.787 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.369 -15.004 11.277 24.259 hybrid contribution -0.117 0.567 1.120 1.261 sum 15.253 -14.436 12.397 24.388 Atomic orbital electron populations 1.69899 1.06219 1.26848 1.49539 1.24843 0.94622 0.98602 0.94587 0.86755 0.81170 0.83672 0.77783 1.18044 1.20905 1.21277 1.20047 0.90941 0.91863 1.47817 1.19321 0.97264 0.93511 0.92296 1.21939 0.93218 0.98470 1.01659 1.21032 0.92055 0.90907 0.90858 0.90428 1.46439 1.27738 1.49089 1.14501 1.20318 0.81202 0.80052 0.89257 1.90742 1.65094 1.63278 1.21269 1.22456 0.98563 1.00912 0.99234 1.20524 0.92592 0.90203 0.86118 0.86777 1.86796 1.70240 1.41303 1.35706 1.20672 0.97123 0.95449 0.98165 1.21047 0.95121 1.00145 0.96456 1.21168 0.99801 0.95063 0.97570 1.21187 0.97472 0.95362 1.00072 1.21130 0.95905 0.99928 0.96600 1.20906 1.00098 0.94465 0.97565 1.21896 0.97258 0.95221 1.00740 1.19934 0.95873 0.96454 0.93920 0.92692 0.97472 0.92461 0.94653 0.92866 0.77511 0.88826 0.88188 0.78746 0.85711 0.85920 0.86106 0.85970 0.86097 0.93267 0.94641 0.96260 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.82 55.43 0.71 -24.71 16 2 C 0.08 2.07 5.44 -17.82 -0.10 1.98 16 3 Si 0.88 20.84 27.95 -169.99 -4.75 16.09 16 4 H -0.26 -5.84 5.57 56.52 0.32 -5.52 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.49 -12.84 5.48 -98.92 -0.54 -13.38 16 8 C 0.01 0.34 5.93 -27.48 -0.16 0.18 16 9 C -0.11 -2.31 5.40 -26.63 -0.14 -2.46 16 10 C 0.15 3.02 2.35 -67.98 -0.16 2.86 16 11 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 12 N -0.73 -11.21 5.07 -53.85 -0.27 -11.48 16 13 C 0.51 7.82 7.67 -10.99 -0.08 7.74 16 14 O -0.53 -10.58 15.08 -8.85 -0.13 -10.71 16 15 C -0.17 -1.78 5.36 -27.89 -0.15 -1.93 16 16 C 0.17 1.84 2.76 -27.88 -0.08 1.76 16 17 H 0.11 1.46 7.86 -51.93 -0.41 1.05 16 18 O -0.54 -6.77 12.37 -49.64 -0.61 -7.39 16 19 C -0.11 -1.07 5.01 -104.62 -0.52 -1.59 16 20 C -0.11 -0.97 9.68 -39.59 -0.38 -1.35 16 21 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.11 -0.93 9.33 -39.59 -0.37 -1.30 16 25 C -0.11 -2.38 5.50 -26.63 -0.15 -2.52 16 26 C -0.02 -0.57 5.66 -27.48 -0.16 -0.73 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 1.53 7.19 -51.93 -0.37 1.15 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 4.83 8.60 -40.82 -0.35 4.48 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.37 3.15 7.39 45.56 0.34 3.48 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.77 6.62 -52.48 -0.35 0.42 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.99 4.35 -51.93 -0.23 0.76 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -32.65 354.05 -9.97 -42.62 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.06 Total: 4.88 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.19 Total: -14.64 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.44 Total: -36.19 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.75 Total: -18.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.75 Total: 16.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.65 -9.97 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185802530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.223 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds