Wall clock time and date at job start Tue Mar 31 2020 08:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00450 * 2 1 4 4 H 1.48505 * 109.46837 * 270.00280 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.47530 * 150.00095 * 3 2 1 7 7 C 1.37885 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99592 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46631 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99876 * 270.00370 * 10 9 7 12 12 C 1.50707 * 109.46870 * 270.00016 * 11 10 9 13 13 C 1.38231 * 120.00271 * 269.72713 * 12 11 10 14 14 C 1.38238 * 120.00287 * 179.76559 * 13 12 11 15 15 C 1.38243 * 119.99456 * 0.51282 * 14 13 12 16 16 C 1.38234 * 120.00177 * 359.74305 * 15 14 13 17 17 C 1.38235 * 119.99612 * 90.00264 * 12 11 10 18 18 C 1.34771 * 119.99823 * 90.00954 * 10 9 7 19 19 O 1.21512 * 120.00188 * 179.97438 * 18 10 9 20 20 O 1.34634 * 120.00145 * 359.97438 * 18 10 9 21 21 C 1.45203 * 117.00173 * 180.02562 * 20 18 10 22 22 C 1.54894 * 110.48415 * 93.24213 * 21 20 18 23 23 C 1.55238 * 102.58338 * 156.67741 * 22 21 20 24 24 C 1.54266 * 104.23333 * 322.08174 * 23 22 21 25 25 C 1.53869 * 106.59800 * 23.61579 * 24 23 22 26 26 H 0.97000 * 119.99674 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46782 * 60.00589 * 9 7 2 28 28 H 1.08996 * 109.47274 * 300.00390 * 9 7 2 29 29 H 1.08998 * 109.47530 * 30.00094 * 11 10 9 30 30 H 1.09001 * 109.47225 * 150.00757 * 11 10 9 31 31 H 1.08002 * 120.00088 * 0.02562 * 13 12 11 32 32 H 1.07993 * 120.00391 * 180.23115 * 14 13 12 33 33 H 1.07997 * 119.99413 * 179.72411 * 15 14 13 34 34 H 1.07992 * 119.99936 * 179.97438 * 16 15 14 35 35 H 1.07993 * 120.00335 * 0.02562 * 17 12 11 36 36 H 1.09002 * 110.43256 * 330.70061 * 21 20 18 37 37 H 1.08996 * 110.75388 * 275.06094 * 22 21 20 38 38 H 1.08993 * 110.76071 * 38.44320 * 22 21 20 39 39 H 1.09005 * 110.46917 * 203.39204 * 23 22 21 40 40 H 1.09007 * 110.58541 * 80.83124 * 23 22 21 41 41 H 1.08999 * 110.03060 * 264.32313 * 24 23 22 42 42 H 1.09006 * 110.06829 * 142.91691 * 24 23 22 43 43 H 1.09001 * 110.02983 * 240.71432 * 25 24 23 44 44 H 1.08996 * 110.07773 * 119.30576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 7 3.9998 -2.5755 0.0001 11 6 4.2443 -3.2659 1.2689 12 6 5.6678 -3.0291 1.7034 13 6 6.6650 -3.9012 1.3089 14 6 7.9715 -3.6813 1.7034 15 6 8.2790 -2.5950 2.5013 16 6 7.2809 -1.7258 2.9002 17 6 5.9752 -1.9428 2.5012 18 6 4.2240 -3.2110 -1.1670 19 8 4.6294 -4.3565 -1.1670 20 8 3.9989 -2.5767 -2.3331 21 6 4.2617 -3.3226 -3.5508 22 6 2.9709 -4.0190 -4.0490 23 6 3.2553 -4.2156 -5.5624 24 6 4.0060 -2.9333 -5.9770 25 6 4.6458 -2.3656 -4.6981 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6799 0.8895 28 1 3.8746 -0.6809 -0.8904 29 1 3.5638 -2.8816 2.0287 30 1 4.0773 -4.3351 1.1388 31 1 6.4242 -4.7521 0.6889 32 1 8.7513 -4.3605 1.3921 33 1 9.2990 -2.4257 2.8132 34 1 7.5211 -0.8775 3.5238 35 1 5.1954 -1.2642 2.8134 36 1 5.0511 -4.0558 -3.3851 37 1 2.8332 -4.9789 -3.5514 38 1 2.1030 -3.3769 -3.8992 39 1 2.3214 -4.3072 -6.1171 40 1 3.8814 -5.0933 -5.7239 41 1 3.3065 -2.2106 -6.3973 42 1 4.7794 -3.1721 -6.7071 43 1 4.2569 -1.3672 -4.4975 44 1 5.7298 -2.3289 -4.8065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193527084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:48 Heat of formation + Delta-G solvation = -64.975114 kcal Electronic energy + Delta-G solvation = -25216.112973 eV Core-core repulsion = 21711.913339 eV Total energy + Delta-G solvation = -3504.199633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05507 -38.98875 -37.64449 -35.57977 -34.90895 -32.65983 -31.34341 -30.68004 -28.61728 -28.10637 -27.86414 -25.68704 -22.77940 -22.19679 -21.60572 -20.61442 -20.17564 -19.60004 -17.31987 -17.10139 -16.65725 -16.28419 -15.50107 -15.37063 -14.98897 -14.83954 -14.73494 -14.30041 -13.65108 -13.31886 -13.20131 -13.13034 -12.64679 -12.45842 -12.32538 -12.21163 -11.89550 -11.74510 -11.46220 -11.18225 -11.16299 -11.01632 -10.93128 -10.70046 -10.63490 -10.46944 -10.37167 -10.26284 -9.92195 -9.74060 -9.58587 -8.71084 -8.66888 -8.58725 -7.88454 -6.15615 -4.15634 1.48339 1.61626 2.91669 3.22767 3.29919 3.31234 3.53524 4.01123 4.32320 4.60679 4.66503 4.74645 5.01456 5.06796 5.08209 5.15881 5.18606 5.36034 5.44487 5.54958 5.56481 5.58654 5.68953 5.71075 5.72837 5.87328 5.93769 5.99442 6.09517 6.10462 6.21566 6.25664 6.29214 6.35314 6.41557 6.45007 6.64473 6.68165 6.77944 6.88174 7.08378 7.21101 7.27752 7.50189 8.10133 8.42743 8.87754 9.04982 9.44090 10.97390 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.006432 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.094940 B = 4352.398909 C = 6649.770358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.215 3.785 10 N -0.569 5.569 11 C 0.173 3.827 12 C -0.100 4.100 13 C -0.096 4.096 14 C -0.129 4.129 15 C -0.124 4.124 16 C -0.128 4.128 17 C -0.102 4.102 18 C 0.654 3.346 19 O -0.600 6.600 20 O -0.344 6.344 21 C 0.101 3.899 22 C -0.141 4.141 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.124 4.124 26 H 0.265 0.735 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.677 -5.062 -3.032 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.095 0.905 9 C 0.094 3.906 10 N -0.305 5.305 11 C 0.051 3.949 12 C -0.101 4.101 13 C -0.114 4.114 14 C -0.147 4.147 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.120 4.120 18 C 0.409 3.591 19 O -0.492 6.492 20 O -0.258 6.258 21 C 0.045 3.955 22 C -0.178 4.178 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.162 4.162 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.605 -5.253 -3.111 14.006 hybrid contribution 0.325 1.001 -0.016 1.053 sum 12.931 -4.252 -3.127 13.966 Atomic orbital electron populations 1.69897 1.06174 1.27040 1.50053 1.24832 0.94711 0.98798 0.94351 0.86923 0.80356 0.83978 0.78931 1.19892 1.20974 1.18914 1.21348 0.89020 0.94975 1.51861 0.90483 1.19795 0.95836 0.77256 0.97701 1.46735 1.65961 1.16215 1.01635 1.20248 0.91468 0.98453 0.84767 1.20440 0.96767 0.95434 0.97485 1.21250 0.92413 0.99477 0.98299 1.21117 0.96476 0.98128 0.99025 1.21097 0.98903 0.95441 0.98757 1.21101 0.93134 0.99531 1.00824 1.21197 0.96723 0.96813 0.97285 1.17988 0.76603 0.82765 0.81720 1.90847 1.53572 1.17534 1.87255 1.86453 1.81152 1.44726 1.13425 1.23453 0.97937 0.93239 0.80901 1.22963 0.98392 1.01270 0.95222 1.22319 1.00326 0.97619 0.95670 1.22062 0.99491 0.97445 0.96719 1.22205 1.00620 1.00368 0.92959 0.92482 0.94853 0.94712 0.88611 0.89474 0.85434 0.86494 0.86606 0.86346 0.85725 0.89550 0.90922 0.89844 0.91255 0.91564 0.91312 0.91681 0.89984 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.08 2.11 5.47 -17.81 -0.10 2.02 16 3 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.21 5.02 4.24 -5.19 -0.02 5.00 16 10 N -0.57 -12.19 2.44 -182.24 -0.44 -12.63 16 11 C 0.17 3.15 5.53 -5.19 -0.03 3.12 16 12 C -0.10 -1.65 5.46 -104.62 -0.57 -2.22 16 13 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 14 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 15 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 16 C -0.13 -1.71 10.05 -39.58 -0.40 -2.10 16 17 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 18 C 0.65 14.27 8.39 54.05 0.45 14.72 16 19 O -0.60 -13.13 14.74 -19.28 -0.28 -13.41 16 20 O -0.34 -7.26 8.77 -40.31 -0.35 -7.61 16 21 C 0.10 1.70 3.18 -25.07 -0.08 1.62 16 22 C -0.14 -2.18 6.66 -24.55 -0.16 -2.34 16 23 C -0.12 -1.43 6.84 -24.88 -0.17 -1.60 16 24 C -0.12 -1.35 6.80 -25.62 -0.17 -1.52 16 25 C -0.12 -1.70 6.57 -25.62 -0.17 -1.87 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 28 H 0.03 0.84 6.80 -51.93 -0.35 0.48 16 29 H 0.10 1.68 8.02 -51.93 -0.42 1.27 16 30 H 0.09 1.57 7.36 -51.93 -0.38 1.18 16 31 H 0.13 2.06 7.60 -52.49 -0.40 1.66 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.09 1.46 7.20 -51.93 -0.37 1.08 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -31.08 364.53 -9.76 -40.85 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.95 Total: 5.23 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.33 Total: -8.03 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.33 Total: -38.37 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.64 Total: -21.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.08 -9.76 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193527084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.126 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds