Wall clock time and date at job start Tue Mar 31 2020 08:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00450 * 2 1 4 4 H 1.48505 * 109.46837 * 270.00280 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.47530 * 150.00095 * 3 2 1 7 7 C 1.37885 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99592 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46631 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99876 * 270.00370 * 10 9 7 12 12 C 1.50707 * 109.46870 * 270.00016 * 11 10 9 13 13 C 1.38231 * 120.00271 * 269.72713 * 12 11 10 14 14 C 1.38238 * 120.00287 * 179.76559 * 13 12 11 15 15 C 1.38243 * 119.99456 * 0.51282 * 14 13 12 16 16 C 1.38234 * 120.00177 * 359.74305 * 15 14 13 17 17 C 1.38235 * 119.99612 * 90.00264 * 12 11 10 18 18 C 1.34771 * 119.99823 * 90.00954 * 10 9 7 19 19 O 1.21512 * 120.00188 * 179.97438 * 18 10 9 20 20 O 1.34634 * 120.00145 * 359.97438 * 18 10 9 21 21 C 1.45203 * 117.00173 * 180.02562 * 20 18 10 22 22 C 1.54894 * 110.48415 * 93.24213 * 21 20 18 23 23 C 1.55238 * 102.58338 * 156.67741 * 22 21 20 24 24 C 1.54266 * 104.23333 * 322.08174 * 23 22 21 25 25 C 1.53869 * 106.59800 * 23.61579 * 24 23 22 26 26 H 0.97000 * 119.99674 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46782 * 60.00589 * 9 7 2 28 28 H 1.08996 * 109.47274 * 300.00390 * 9 7 2 29 29 H 1.08998 * 109.47530 * 30.00094 * 11 10 9 30 30 H 1.09001 * 109.47225 * 150.00757 * 11 10 9 31 31 H 1.08002 * 120.00088 * 0.02562 * 13 12 11 32 32 H 1.07993 * 120.00391 * 180.23115 * 14 13 12 33 33 H 1.07997 * 119.99413 * 179.72411 * 15 14 13 34 34 H 1.07992 * 119.99936 * 179.97438 * 16 15 14 35 35 H 1.07993 * 120.00335 * 0.02562 * 17 12 11 36 36 H 1.09002 * 110.43256 * 330.70061 * 21 20 18 37 37 H 1.08996 * 110.75388 * 275.06094 * 22 21 20 38 38 H 1.08993 * 110.76071 * 38.44320 * 22 21 20 39 39 H 1.09005 * 110.46917 * 203.39204 * 23 22 21 40 40 H 1.09007 * 110.58541 * 80.83124 * 23 22 21 41 41 H 1.08999 * 110.03060 * 264.32313 * 24 23 22 42 42 H 1.09006 * 110.06829 * 142.91691 * 24 23 22 43 43 H 1.09001 * 110.02983 * 240.71432 * 25 24 23 44 44 H 1.08996 * 110.07773 * 119.30576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 7 3.9998 -2.5755 0.0001 11 6 4.2443 -3.2659 1.2689 12 6 5.6678 -3.0291 1.7034 13 6 6.6650 -3.9012 1.3089 14 6 7.9715 -3.6813 1.7034 15 6 8.2790 -2.5950 2.5013 16 6 7.2809 -1.7258 2.9002 17 6 5.9752 -1.9428 2.5012 18 6 4.2240 -3.2110 -1.1670 19 8 4.6294 -4.3565 -1.1670 20 8 3.9989 -2.5767 -2.3331 21 6 4.2617 -3.3226 -3.5508 22 6 2.9709 -4.0190 -4.0490 23 6 3.2553 -4.2156 -5.5624 24 6 4.0060 -2.9333 -5.9770 25 6 4.6458 -2.3656 -4.6981 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6799 0.8895 28 1 3.8746 -0.6809 -0.8904 29 1 3.5638 -2.8816 2.0287 30 1 4.0773 -4.3351 1.1388 31 1 6.4242 -4.7521 0.6889 32 1 8.7513 -4.3605 1.3921 33 1 9.2990 -2.4257 2.8132 34 1 7.5211 -0.8775 3.5238 35 1 5.1954 -1.2642 2.8134 36 1 5.0511 -4.0558 -3.3851 37 1 2.8332 -4.9789 -3.5514 38 1 2.1030 -3.3769 -3.8992 39 1 2.3214 -4.3072 -6.1171 40 1 3.8814 -5.0933 -5.7239 41 1 3.3065 -2.2106 -6.3973 42 1 4.7794 -3.1721 -6.7071 43 1 4.2569 -1.3672 -4.4975 44 1 5.7298 -2.3289 -4.8065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193527084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:47 Heat of formation + Delta-G solvation = -80.817024 kcal Electronic energy + Delta-G solvation = -25216.799929 eV Core-core repulsion = 21711.913339 eV Total energy + Delta-G solvation = -3504.886590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64416 -40.17778 -38.94069 -37.08468 -36.56499 -34.68522 -32.72880 -31.77092 -29.97068 -29.73803 -29.09355 -27.10439 -24.66491 -23.37709 -22.92785 -21.84224 -21.26895 -21.09095 -19.16204 -18.99178 -18.14156 -17.61178 -16.99085 -16.65015 -16.42155 -16.07997 -16.01592 -15.91170 -15.19970 -14.57788 -14.52386 -14.32252 -14.27952 -13.87766 -13.80408 -13.50466 -13.45360 -13.15596 -13.03556 -12.74525 -12.52180 -12.25681 -12.17832 -12.09289 -11.97777 -11.85121 -11.76858 -11.71523 -11.56096 -11.40075 -11.18976 -10.80924 -9.80357 -9.77160 -9.59187 -8.31958 -6.38625 0.33724 0.51859 1.35639 1.38261 1.41932 1.48755 1.84310 2.32505 2.84064 3.02084 3.12975 3.53195 3.59968 3.86468 3.87920 3.94013 4.17103 4.20323 4.30902 4.32784 4.42882 4.47428 4.49212 4.57363 4.61890 4.69706 4.72141 4.76243 4.81495 4.85497 4.95978 5.01410 5.09628 5.14174 5.18238 5.18508 5.40762 5.41726 5.52516 5.55879 5.58762 5.61633 5.75265 6.12746 6.15418 6.47417 6.63579 7.22417 7.37998 8.84751 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.006432 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.094940 B = 4352.398909 C = 6649.770358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.020 3.980 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.027 0.973 9 C 0.229 3.771 10 N -0.574 5.574 11 C 0.172 3.828 12 C -0.117 4.117 13 C -0.112 4.112 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.116 4.116 18 C 0.648 3.352 19 O -0.608 6.608 20 O -0.365 6.365 21 C 0.088 3.912 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.120 4.120 26 H 0.269 0.731 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.962 -3.754 -3.463 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.161 1.161 7 C -0.577 4.577 8 H 0.046 0.954 9 C 0.107 3.893 10 N -0.311 5.311 11 C 0.051 3.949 12 C -0.118 4.118 13 C -0.131 4.131 14 C -0.147 4.147 15 C -0.134 4.134 16 C -0.143 4.143 17 C -0.134 4.134 18 C 0.403 3.597 19 O -0.501 6.501 20 O -0.279 6.279 21 C 0.032 3.968 22 C -0.183 4.183 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.158 4.158 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.907 -3.973 -3.538 16.773 hybrid contribution -0.723 0.464 0.135 0.870 sum 15.184 -3.509 -3.403 15.952 Atomic orbital electron populations 1.70052 1.08267 1.28374 1.51467 1.25762 0.95524 1.03017 0.93604 0.85809 0.79935 0.78436 0.79456 1.19329 1.20364 1.16077 1.21475 0.91160 0.93267 1.51806 0.95414 1.19516 0.92963 0.78652 0.98132 1.46845 1.65820 1.15774 1.02635 1.20326 0.93405 0.97672 0.83527 1.20243 0.95456 0.96946 0.99192 1.21226 0.93596 0.99242 0.98994 1.21420 0.95849 0.98869 0.98547 1.21526 1.00467 0.94188 0.97219 1.21453 0.92184 1.00338 1.00369 1.21303 0.98039 0.96497 0.97576 1.18162 0.76640 0.82825 0.82112 1.90818 1.54067 1.17736 1.87471 1.86441 1.81189 1.45936 1.14299 1.23893 0.98407 0.94185 0.80269 1.22963 0.96978 0.99864 0.98457 1.22321 1.01550 0.98777 0.92304 1.22087 1.00206 0.96920 0.95874 1.22269 1.02040 0.98799 0.92665 0.92206 0.93099 0.94870 0.88762 0.90239 0.86985 0.84054 0.83042 0.83532 0.85768 0.89794 0.92208 0.92397 0.89843 0.89830 0.90788 0.88703 0.91466 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 2 C 0.02 1.11 5.47 84.66 0.46 1.58 16 3 Si 0.94 42.00 27.47 68.60 1.88 43.89 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -30.64 9.94 25.60 0.25 -30.39 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 9 C 0.23 10.84 4.24 85.63 0.36 11.20 16 10 N -0.57 -25.50 2.44 -960.91 -2.34 -27.85 16 11 C 0.17 6.56 5.53 85.63 0.47 7.03 16 12 C -0.12 -3.88 5.46 -19.86 -0.11 -3.99 16 13 C -0.11 -3.47 9.70 22.27 0.22 -3.25 16 14 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 15 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 16 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 17 C -0.12 -3.38 9.70 22.27 0.22 -3.16 16 18 C 0.65 29.43 8.39 129.79 1.09 30.52 16 19 O -0.61 -27.76 14.74 19.80 0.29 -27.46 16 20 O -0.37 -15.98 8.77 -55.44 -0.49 -16.47 16 21 C 0.09 3.00 3.18 31.67 0.10 3.11 16 22 C -0.14 -4.64 6.66 32.01 0.21 -4.43 16 23 C -0.11 -2.47 6.84 31.79 0.22 -2.25 16 24 C -0.11 -2.29 6.80 31.32 0.21 -2.08 16 25 C -0.12 -3.17 6.57 31.32 0.21 -2.96 16 26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 28 H 0.03 1.59 6.80 -2.39 -0.02 1.57 16 29 H 0.09 3.51 8.02 -2.39 -0.02 3.49 16 30 H 0.08 3.07 7.36 -2.39 -0.02 3.05 16 31 H 0.11 3.74 7.60 -2.91 -0.02 3.72 16 32 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.08 2.88 7.20 -2.39 -0.02 2.86 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.63 364.53 5.15 -65.48 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.91 Total: 26.87 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.59 Total: -7.01 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.04 Total: -85.30 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.19 Total: -43.93 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -70.63 5.15 -65.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193527084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.334 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds