Wall clock time and date at job start Tue Mar 31 2020 08:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31459 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47082 * 300.00217 * 3 2 1 6 6 H 1.48499 * 109.47063 * 59.99935 * 3 2 1 7 7 C 1.38889 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00061 * 156.56789 * 7 2 1 9 9 N 1.37195 * 119.99562 * 336.57018 * 7 2 1 10 10 C 1.46499 * 120.00211 * 325.96859 * 9 7 2 11 11 C 1.50694 * 109.47005 * 266.64173 * 10 9 7 12 12 C 1.38239 * 120.00210 * 264.49583 * 11 10 9 13 13 C 1.38235 * 119.99879 * 179.77080 * 12 11 10 14 14 C 1.38236 * 120.00092 * 0.50299 * 13 12 11 15 15 C 1.38233 * 120.00221 * 359.74793 * 14 13 12 16 16 C 1.38236 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99574 * 145.96966 * 9 7 2 18 18 O 1.21506 * 119.99602 * 180.02562 * 17 9 7 19 19 O 1.34663 * 120.00441 * 359.97438 * 17 9 7 20 20 C 1.45199 * 117.00425 * 180.02562 * 19 17 9 21 21 C 1.53000 * 109.46983 * 90.00022 * 20 19 17 22 22 C 1.53004 * 109.47200 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.46603 * 299.99970 * 22 21 20 24 24 C 1.53000 * 109.47318 * 60.00102 * 23 22 21 25 25 C 1.52992 * 109.47174 * 210.00027 * 20 19 17 26 26 H 0.96990 * 120.00455 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47144 * 26.64086 * 10 9 7 28 28 H 1.09001 * 109.46864 * 146.63907 * 10 9 7 29 29 H 1.08001 * 119.99574 * 359.97438 * 12 11 10 30 30 H 1.08004 * 119.99826 * 180.23264 * 13 12 11 31 31 H 1.08002 * 119.99569 * 179.73410 * 14 13 12 32 32 H 1.07994 * 120.00463 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.99824 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46856 * 330.00322 * 20 19 17 35 35 H 1.09001 * 109.46986 * 300.00034 * 21 20 19 36 36 H 1.08990 * 109.47354 * 59.99862 * 21 20 19 37 37 H 1.08994 * 109.47613 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.47109 * 59.99295 * 22 21 20 39 39 H 1.09003 * 109.47320 * 299.99912 * 23 22 21 40 40 H 1.09003 * 109.47182 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46986 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.47665 * 59.99896 * 24 23 22 43 43 H 1.08995 * 109.47497 * 299.99624 * 25 20 19 44 44 H 1.09001 * 109.47170 * 59.99961 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7086 1.3465 0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8898 2.3965 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0223 -1.2414 -0.3714 9 7 1.4080 -2.3417 0.4735 10 6 0.4585 -2.2609 1.5862 11 6 1.1859 -2.4947 2.8851 12 6 1.2119 -3.7584 3.4450 13 6 1.8831 -3.9738 4.6341 14 6 2.5195 -2.9235 5.2687 15 6 2.4891 -1.6587 4.7116 16 6 1.8218 -1.4443 3.5201 17 6 1.6911 -3.5349 -0.0856 18 8 1.1584 -4.5436 0.3330 19 8 2.5635 -3.6092 -1.1087 20 6 2.8200 -4.9268 -1.6622 21 6 1.8278 -5.2071 -2.7926 22 6 2.0976 -6.5959 -3.3754 23 6 3.5248 -6.6500 -3.9242 24 6 4.5170 -6.3697 -2.7938 25 6 4.2470 -4.9805 -2.2111 26 1 -0.4850 0.8399 0.0004 27 1 -0.0016 -1.2729 1.6002 28 1 -0.3139 -3.0197 1.4605 29 1 0.7106 -4.5780 2.9516 30 1 1.9067 -4.9619 5.0696 31 1 3.0403 -3.0910 6.1999 32 1 2.9859 -0.8381 5.2075 33 1 1.7977 -0.4561 3.0850 34 1 2.7026 -5.6781 -0.8811 35 1 0.8111 -5.1689 -2.4014 36 1 1.9451 -4.4560 -3.5735 37 1 1.3912 -6.7954 -4.1810 38 1 1.9801 -7.3468 -2.5942 39 1 3.6424 -5.8990 -4.7054 40 1 3.7173 -7.6395 -4.3390 41 1 5.5337 -6.4079 -3.1849 42 1 4.3995 -7.1207 -2.0126 43 1 4.3644 -4.2294 -2.9922 44 1 4.9539 -4.7808 -1.4058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193621122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:28 Heat of formation + Delta-G solvation = -70.591236 kcal Electronic energy + Delta-G solvation = -25425.857649 eV Core-core repulsion = 21921.414482 eV Total energy + Delta-G solvation = -3504.443167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.60947 -38.65540 -37.64499 -35.55599 -34.46244 -31.85312 -30.81514 -30.61656 -30.27644 -29.45012 -25.88983 -24.64680 -22.49045 -22.23082 -21.91281 -20.85756 -19.61544 -19.56762 -18.13624 -16.53856 -15.99747 -15.72273 -15.22804 -14.86689 -14.52682 -14.50769 -14.30128 -14.03866 -13.87020 -13.53947 -13.02852 -12.82144 -12.65328 -12.38668 -12.12984 -12.02765 -12.00754 -11.51078 -11.28378 -11.02384 -10.93377 -10.89357 -10.83605 -10.49220 -10.42490 -10.40333 -10.32542 -10.12184 -10.02584 -9.50161 -9.34621 -8.91636 -8.32115 -8.14563 -7.63502 -6.39165 -4.02356 1.92116 2.00757 3.11384 3.22571 3.27441 3.49215 4.07886 4.19542 4.41930 4.85654 4.89820 4.99472 5.02220 5.33936 5.38999 5.42992 5.48103 5.54511 5.58492 5.63557 5.66660 5.73241 5.78522 5.87551 5.97722 6.10505 6.10844 6.17480 6.22033 6.26964 6.31205 6.37395 6.42356 6.56292 6.60915 6.62881 6.74158 7.03876 7.05465 7.13762 7.38879 7.48757 7.61053 7.64603 7.89039 8.39505 9.08317 9.42839 9.98399 10.65344 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.005365 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.264408 B = 5217.503897 C = 6687.935062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.321 4.321 8 H 0.093 0.907 9 N -0.422 5.422 10 C 0.165 3.835 11 C -0.083 4.083 12 C -0.101 4.101 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.094 4.094 17 C 0.610 3.390 18 O -0.626 6.626 19 O -0.353 6.353 20 C 0.108 3.892 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.116 4.116 26 H 0.269 0.731 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -7.037 0.144 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.449 4.449 8 H 0.111 0.889 9 N -0.147 5.147 10 C 0.042 3.958 11 C -0.085 4.085 12 C -0.119 4.119 13 C -0.152 4.152 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.112 4.112 17 C 0.365 3.635 18 O -0.522 6.522 19 O -0.267 6.267 20 C 0.052 3.948 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.154 4.154 26 H 0.079 0.921 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.968 -7.195 0.192 8.746 hybrid contribution 0.386 0.838 0.010 0.922 sum 5.354 -6.357 0.202 8.314 Atomic orbital electron populations 1.69974 1.06105 1.27661 1.46369 1.25271 0.95045 0.99736 0.96494 0.86138 0.80321 0.81908 0.78030 1.19097 1.20727 1.20388 1.19515 0.97862 0.85028 1.42485 0.88906 1.42279 1.41575 1.03148 1.27742 1.20416 0.89734 1.05294 0.80311 1.20642 0.98129 0.93015 0.96696 1.21252 0.98712 0.96988 0.94976 1.21041 0.99361 0.98392 0.96373 1.20976 1.00861 0.93401 0.99889 1.21058 1.00602 0.96808 0.96640 1.21137 0.96337 0.99438 0.94305 1.18398 0.80438 0.85272 0.79367 1.90766 1.57932 1.35706 1.67787 1.86372 1.60407 1.32341 1.47591 1.22321 0.94082 0.83737 0.94708 1.21910 1.00092 0.96897 0.98241 1.21479 0.96418 0.97096 1.00199 1.21587 0.95036 1.01260 0.98006 1.21496 0.98970 0.96570 0.98116 1.21592 0.95302 0.97439 1.01018 0.92099 0.86107 0.91707 0.85866 0.86978 0.87096 0.86858 0.86032 0.90504 0.91233 0.91389 0.91866 0.91892 0.91832 0.92143 0.91593 0.91863 0.91012 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.60 11.39 55.49 0.63 -21.96 16 2 C 0.04 0.99 4.91 -17.47 -0.09 0.90 16 3 Si 0.91 19.61 29.61 -169.99 -5.03 14.57 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.32 -8.44 8.97 -14.91 -0.13 -8.58 16 8 H 0.09 2.47 7.69 -52.49 -0.40 2.07 16 9 N -0.42 -10.91 2.54 -121.52 -0.31 -11.22 16 10 C 0.16 3.94 5.07 -5.20 -0.03 3.92 16 11 C -0.08 -1.78 5.44 -104.62 -0.57 -2.35 16 12 C -0.10 -1.99 9.63 -39.58 -0.38 -2.37 16 13 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 14 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 15 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 16 C -0.09 -1.86 9.72 -39.58 -0.38 -2.24 16 17 C 0.61 15.61 8.30 54.06 0.45 16.06 16 18 O -0.63 -16.29 14.92 -19.28 -0.29 -16.58 16 19 O -0.35 -8.29 8.97 -40.39 -0.36 -8.65 16 20 C 0.11 2.01 2.46 -26.74 -0.07 1.94 16 21 C -0.13 -2.23 5.56 -26.73 -0.15 -2.38 16 22 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 23 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 24 C -0.11 -1.33 5.92 -26.71 -0.16 -1.49 16 25 C -0.12 -1.72 5.59 -26.71 -0.15 -1.87 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.12 3.02 5.36 -51.93 -0.28 2.74 16 28 H 0.06 1.57 7.43 -51.93 -0.39 1.19 16 29 H 0.12 2.50 7.79 -52.49 -0.41 2.09 16 30 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 34 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -28.94 359.70 -10.01 -38.95 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.90 Total: 8.91 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.16 Total: -9.43 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.32 Total: -33.19 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.65 Total: -25.23 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.94 -10.01 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193621122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.643 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds