Wall clock time and date at job start Tue Mar 31 2020 08:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31459 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47082 * 300.00217 * 3 2 1 6 6 H 1.48499 * 109.47063 * 59.99935 * 3 2 1 7 7 C 1.38889 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00061 * 156.56789 * 7 2 1 9 9 N 1.37195 * 119.99562 * 336.57018 * 7 2 1 10 10 C 1.46499 * 120.00211 * 325.96859 * 9 7 2 11 11 C 1.50694 * 109.47005 * 266.64173 * 10 9 7 12 12 C 1.38239 * 120.00210 * 264.49583 * 11 10 9 13 13 C 1.38235 * 119.99879 * 179.77080 * 12 11 10 14 14 C 1.38236 * 120.00092 * 0.50299 * 13 12 11 15 15 C 1.38233 * 120.00221 * 359.74793 * 14 13 12 16 16 C 1.38236 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99574 * 145.96966 * 9 7 2 18 18 O 1.21506 * 119.99602 * 180.02562 * 17 9 7 19 19 O 1.34663 * 120.00441 * 359.97438 * 17 9 7 20 20 C 1.45199 * 117.00425 * 180.02562 * 19 17 9 21 21 C 1.53000 * 109.46983 * 90.00022 * 20 19 17 22 22 C 1.53004 * 109.47200 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.46603 * 299.99970 * 22 21 20 24 24 C 1.53000 * 109.47318 * 60.00102 * 23 22 21 25 25 C 1.52992 * 109.47174 * 210.00027 * 20 19 17 26 26 H 0.96990 * 120.00455 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47144 * 26.64086 * 10 9 7 28 28 H 1.09001 * 109.46864 * 146.63907 * 10 9 7 29 29 H 1.08001 * 119.99574 * 359.97438 * 12 11 10 30 30 H 1.08004 * 119.99826 * 180.23264 * 13 12 11 31 31 H 1.08002 * 119.99569 * 179.73410 * 14 13 12 32 32 H 1.07994 * 120.00463 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.99824 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46856 * 330.00322 * 20 19 17 35 35 H 1.09001 * 109.46986 * 300.00034 * 21 20 19 36 36 H 1.08990 * 109.47354 * 59.99862 * 21 20 19 37 37 H 1.08994 * 109.47613 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.47109 * 59.99295 * 22 21 20 39 39 H 1.09003 * 109.47320 * 299.99912 * 23 22 21 40 40 H 1.09003 * 109.47182 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46986 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.47665 * 59.99896 * 24 23 22 43 43 H 1.08995 * 109.47497 * 299.99624 * 25 20 19 44 44 H 1.09001 * 109.47170 * 59.99961 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7086 1.3465 0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8898 2.3965 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0223 -1.2414 -0.3714 9 7 1.4080 -2.3417 0.4735 10 6 0.4585 -2.2609 1.5862 11 6 1.1859 -2.4947 2.8851 12 6 1.2119 -3.7584 3.4450 13 6 1.8831 -3.9738 4.6341 14 6 2.5195 -2.9235 5.2687 15 6 2.4891 -1.6587 4.7116 16 6 1.8218 -1.4443 3.5201 17 6 1.6911 -3.5349 -0.0856 18 8 1.1584 -4.5436 0.3330 19 8 2.5635 -3.6092 -1.1087 20 6 2.8200 -4.9268 -1.6622 21 6 1.8278 -5.2071 -2.7926 22 6 2.0976 -6.5959 -3.3754 23 6 3.5248 -6.6500 -3.9242 24 6 4.5170 -6.3697 -2.7938 25 6 4.2470 -4.9805 -2.2111 26 1 -0.4850 0.8399 0.0004 27 1 -0.0016 -1.2729 1.6002 28 1 -0.3139 -3.0197 1.4605 29 1 0.7106 -4.5780 2.9516 30 1 1.9067 -4.9619 5.0696 31 1 3.0403 -3.0910 6.1999 32 1 2.9859 -0.8381 5.2075 33 1 1.7977 -0.4561 3.0850 34 1 2.7026 -5.6781 -0.8811 35 1 0.8111 -5.1689 -2.4014 36 1 1.9451 -4.4560 -3.5735 37 1 1.3912 -6.7954 -4.1810 38 1 1.9801 -7.3468 -2.5942 39 1 3.6424 -5.8990 -4.7054 40 1 3.7173 -7.6395 -4.3390 41 1 5.5337 -6.4079 -3.1849 42 1 4.3995 -7.1207 -2.0126 43 1 4.3644 -4.2294 -2.9922 44 1 4.9539 -4.7808 -1.4058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193621122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:27 Heat of formation + Delta-G solvation = -83.767790 kcal Electronic energy + Delta-G solvation = -25426.429027 eV Core-core repulsion = 21921.414482 eV Total energy + Delta-G solvation = -3505.014545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40258 -40.13238 -39.07920 -37.25430 -36.37860 -33.76225 -32.44495 -31.77410 -31.71207 -30.75785 -27.69663 -26.55087 -23.77030 -23.49621 -23.35748 -22.34981 -21.41201 -20.83537 -19.99903 -18.28592 -17.64332 -17.43965 -16.99807 -16.33581 -16.31324 -15.98660 -15.79058 -15.37919 -15.12236 -15.05965 -14.51550 -14.23824 -14.03559 -13.89118 -13.61723 -13.53964 -13.24310 -13.19738 -13.11640 -12.70398 -12.59932 -12.24086 -12.11360 -12.06141 -11.94182 -11.79138 -11.76055 -11.58769 -11.39327 -11.35233 -10.89492 -10.80037 -9.76052 -9.64024 -9.61025 -8.35819 -6.07227 0.45548 0.56313 1.38183 1.44224 1.57402 1.77834 2.12281 2.37323 2.91918 3.05739 3.65199 3.73486 3.76017 4.01185 4.03448 4.09798 4.21824 4.23291 4.24089 4.33750 4.35454 4.48093 4.49415 4.51575 4.64623 4.71770 4.81926 4.89510 5.00992 5.05446 5.11205 5.15959 5.19047 5.19671 5.25093 5.26781 5.33126 5.43825 5.48767 5.62805 5.63582 5.69153 5.90974 5.98470 6.19584 6.37385 7.07624 7.43692 8.01079 8.69565 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.005365 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.264408 B = 5217.503897 C = 6687.935062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.007 3.993 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.083 0.917 9 N -0.431 5.431 10 C 0.172 3.828 11 C -0.108 4.108 12 C -0.119 4.119 13 C -0.129 4.129 14 C -0.120 4.120 15 C -0.127 4.127 16 C -0.111 4.111 17 C 0.598 3.402 18 O -0.643 6.643 19 O -0.370 6.370 20 C 0.098 3.902 21 C -0.130 4.130 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.110 4.110 26 H 0.275 0.725 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -7.260 0.928 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.195 4.195 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.101 0.899 9 N -0.156 5.156 10 C 0.050 3.950 11 C -0.110 4.110 12 C -0.138 4.138 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.144 4.144 16 C -0.130 4.130 17 C 0.354 3.646 18 O -0.540 6.540 19 O -0.284 6.284 20 C 0.042 3.958 21 C -0.168 4.168 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.146 4.146 25 C -0.148 4.148 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.393 -7.432 0.973 10.528 hybrid contribution -0.406 0.859 -0.204 0.972 sum 6.987 -6.573 0.768 9.624 Atomic orbital electron populations 1.70057 1.07537 1.28853 1.46458 1.26075 0.95704 1.02504 0.95260 0.85126 0.79024 0.77428 0.78362 1.18698 1.20390 1.19079 1.19590 0.97707 0.85806 1.44072 0.89937 1.42536 1.41544 1.03236 1.28284 1.20260 0.89541 1.03483 0.81737 1.20433 0.99881 0.94564 0.96072 1.21207 1.00145 0.95833 0.96619 1.21396 0.97884 1.00468 0.94885 1.21474 0.99295 0.92182 1.00797 1.21433 0.99241 0.98590 0.95177 1.21138 0.97573 0.98392 0.95894 1.18626 0.80852 0.85267 0.79864 1.90721 1.58694 1.36170 1.68445 1.86351 1.59764 1.35364 1.46915 1.22783 0.97141 0.81245 0.94609 1.21892 0.97641 0.99774 0.97492 1.21486 0.98662 0.93945 1.00535 1.21595 0.92963 1.03159 0.97717 1.21526 1.00746 0.93955 0.98346 1.21644 0.92249 1.00052 1.00847 0.91559 0.87596 0.93826 0.87685 0.83848 0.82595 0.83476 0.87276 0.92269 0.94672 0.91506 0.90139 0.92022 0.91271 0.89199 0.88780 0.91658 0.90870 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.30 11.39 21.66 0.25 -48.05 16 2 C 0.01 0.37 4.91 84.90 0.42 0.79 16 3 Si 0.98 40.56 29.61 68.60 2.03 42.60 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.34 -18.94 8.97 84.01 0.75 -18.18 16 8 H 0.08 4.60 7.69 -2.91 -0.02 4.58 16 9 N -0.43 -23.68 2.54 -768.78 -1.95 -25.63 16 10 C 0.17 8.84 5.07 85.63 0.43 9.27 16 11 C -0.11 -4.84 5.44 -19.87 -0.11 -4.95 16 12 C -0.12 -4.86 9.63 22.27 0.21 -4.64 16 13 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 14 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 15 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 16 C -0.11 -4.45 9.72 22.27 0.22 -4.24 16 17 C 0.60 32.76 8.30 129.79 1.08 33.83 16 18 O -0.64 -35.95 14.92 19.82 0.30 -35.65 16 19 O -0.37 -18.43 8.97 -55.73 -0.50 -18.93 16 20 C 0.10 3.81 2.46 30.59 0.08 3.88 16 21 C -0.13 -4.53 5.56 30.60 0.17 -4.36 16 22 C -0.11 -2.70 5.92 30.60 0.18 -2.52 16 23 C -0.12 -2.28 5.92 30.59 0.18 -2.09 16 24 C -0.11 -2.28 5.92 30.61 0.18 -2.10 16 25 C -0.11 -3.26 5.59 30.61 0.17 -3.09 16 26 H 0.27 13.80 8.31 -92.72 -0.77 13.03 16 27 H 0.11 5.68 5.36 -2.39 -0.01 5.67 16 28 H 0.04 2.32 7.43 -2.39 -0.02 2.31 16 29 H 0.10 4.56 7.79 -2.91 -0.02 4.53 16 30 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.06 2.48 7.16 -2.39 -0.02 2.46 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.29 359.70 5.73 -61.56 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.97 Total: 33.28 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.64 Total: -9.17 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.70 Total: -73.68 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.20 Total: -54.58 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.60 kcal Total: -67.29 5.73 -61.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193621122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds