Wall clock time and date at job start Tue Mar 31 2020 08:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38245 * 119.92998 * 269.72981 * 13 12 11 15 15 C 1.38246 * 120.14758 * 179.72203 * 14 13 12 16 16 C 1.38563 * 119.99793 * 0.54944 * 15 14 13 17 17 O 1.35997 * 120.07409 * 179.74682 * 16 15 14 18 18 C 1.39159 * 119.85123 * 359.72679 * 16 15 14 19 19 O 1.35997 * 120.07063 * 180.02562 * 18 16 15 20 20 C 1.42900 * 117.00159 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47063 * 179.97438 * 20 19 18 22 22 C 1.52993 * 117.50086 * 243.61941 * 21 20 19 23 23 C 1.52997 * 60.00396 * 252.51777 * 22 21 20 24 24 C 1.38244 * 119.92356 * 90.00293 * 13 12 11 25 25 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 26 26 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 27 27 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 28 28 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 29 29 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 30 30 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 31 31 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 32 32 H 1.08008 * 119.92940 * 0.02562 * 14 13 12 33 33 H 1.08002 * 119.99855 * 180.27665 * 15 14 13 34 34 H 0.96696 * 113.99461 * 269.97883 * 17 16 15 35 35 H 1.08994 * 109.46865 * 299.99925 * 20 19 18 36 36 H 1.09001 * 109.46860 * 60.00001 * 20 19 18 37 37 H 1.09004 * 115.54975 * 29.33849 * 21 20 19 38 38 H 1.09007 * 117.50096 * 0.02562 * 22 21 20 39 39 H 1.08998 * 117.49844 * 145.02270 * 22 21 20 40 40 H 1.09000 * 117.49563 * 252.51149 * 23 22 21 41 41 H 1.08995 * 117.50052 * 107.49147 * 23 22 21 42 42 H 1.08004 * 120.00237 * 0.02562 * 24 13 12 43 43 H 1.09007 * 113.75652 * 270.36911 * 25 11 10 44 44 H 1.08993 * 113.76177 * 139.00817 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.4922 -2.4739 2.9535 14 6 7.7768 -2.8866 2.6525 15 6 8.8453 -2.4350 3.4044 16 6 8.6288 -1.5757 4.4696 17 8 9.6783 -1.1346 5.2136 18 6 7.3351 -1.1648 4.7762 19 8 7.1175 -0.3210 5.8203 20 6 5.7640 0.0591 6.0762 21 6 5.7181 1.0031 7.2793 22 6 4.9702 0.5241 8.5251 23 6 4.3652 1.6182 7.6433 24 6 6.2692 -1.6166 4.0149 25 6 4.1311 -2.6025 0.0450 26 1 -0.4849 0.8400 0.0004 27 1 3.9361 -0.5532 -0.7738 28 1 4.5830 0.0035 1.5245 29 1 3.4736 -1.2616 2.2133 30 1 4.4382 -3.0155 2.7488 31 1 5.5585 -3.9556 1.7342 32 1 7.9466 -3.5596 1.8249 33 1 9.8484 -2.7555 3.1644 34 1 9.8898 -1.6997 5.9692 35 1 5.3572 0.5653 5.2009 36 1 5.1711 -0.8303 6.2898 37 1 6.6066 1.6163 7.4299 38 1 4.5112 -0.4639 8.4878 39 1 5.3668 0.8218 9.4957 40 1 4.3638 2.6359 8.0338 41 1 3.5080 1.3503 7.0257 42 1 5.2642 -1.2995 4.2510 43 1 3.4728 -3.3581 0.4740 44 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233224310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:04 Heat of formation + Delta-G solvation = 5.160694 kcal Electronic energy + Delta-G solvation = -24461.083602 eV Core-core repulsion = 20959.925286 eV Total energy + Delta-G solvation = -3501.158317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51078 -39.03934 -38.31629 -36.90248 -36.54993 -32.78397 -31.50339 -30.19343 -28.69945 -27.51479 -25.47586 -25.25515 -22.81563 -22.67897 -22.45145 -21.11402 -20.60244 -18.68235 -18.55127 -17.58491 -17.07482 -16.38425 -16.07304 -15.73269 -15.24461 -15.07409 -14.79311 -14.44796 -14.22784 -13.92608 -13.74555 -13.48010 -12.98570 -12.69393 -12.45964 -12.18275 -11.86705 -11.83944 -11.80786 -11.45922 -11.31243 -11.09124 -10.99918 -10.83324 -10.51982 -10.37164 -10.20513 -10.02420 -9.94317 -9.59829 -9.19705 -8.72359 -8.60855 -8.10843 -8.03073 -6.14430 -4.14973 1.21482 1.41160 2.93733 3.26572 3.35424 3.39903 3.52768 3.62184 4.16950 4.38590 4.44883 4.59169 4.67533 4.70804 4.85128 4.93860 4.98310 5.07880 5.16022 5.27080 5.34095 5.35957 5.37507 5.52983 5.60253 5.61873 5.70524 5.82965 5.88057 5.91402 5.91803 6.06995 6.17203 6.27379 6.30673 6.40068 6.45527 6.64644 6.69708 6.71102 6.98968 7.19315 7.32502 7.65673 7.70834 7.77281 8.44219 8.88307 9.48608 10.98072 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.004564 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.222435 B = 6132.908176 C = 8058.439071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.514 4.514 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.006 4.006 11 N -0.483 5.483 12 C 0.054 3.946 13 C -0.026 4.026 14 C -0.127 4.127 15 C -0.107 4.107 16 C 0.061 3.939 17 O -0.487 6.487 18 C 0.106 3.894 19 O -0.305 6.305 20 C 0.087 3.913 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.170 4.170 24 C -0.187 4.187 25 C 0.013 3.987 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.380 0.620 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.063 0.937 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.460 -3.354 14.450 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.021 4.021 10 C -0.134 4.134 11 N -0.205 5.205 12 C -0.074 4.074 13 C -0.027 4.027 14 C -0.145 4.145 15 C -0.126 4.126 16 C 0.016 3.984 17 O -0.296 6.296 18 C 0.061 3.939 19 O -0.219 6.219 20 C 0.012 3.988 21 C -0.173 4.173 22 C -0.214 4.214 23 C -0.207 4.207 24 C -0.206 4.206 25 C -0.116 4.116 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.091 -2.526 13.972 20.721 hybrid contribution -0.666 0.285 0.668 0.985 sum 14.425 -2.241 14.640 20.674 Atomic orbital electron populations 1.69913 1.06399 1.27106 1.50226 1.24992 0.94612 0.99181 0.93988 0.86956 0.80877 0.83462 0.78857 1.20241 1.21503 1.17892 1.20976 0.88379 0.94511 1.51363 0.90815 1.20732 0.96342 0.92480 0.92534 1.24579 0.92563 0.95097 1.01202 1.68604 1.34676 1.08136 1.09115 1.21636 0.94898 0.97166 0.93692 1.19671 0.95093 0.94579 0.93330 1.20815 0.91339 1.02086 1.00297 1.21177 0.99746 0.96347 0.95291 1.17684 0.83988 1.00515 0.96205 1.84906 1.48292 1.52819 1.43572 1.19349 0.93368 0.92462 0.88764 1.86075 1.28707 1.60736 1.46387 1.22348 0.81814 0.97376 0.97253 1.22072 0.97470 1.02224 0.95557 1.23097 1.03738 0.99427 0.95090 1.23020 0.95770 0.98640 1.03234 1.21097 0.98298 1.02632 0.98583 1.23890 0.92760 0.99032 0.95880 0.92598 0.92933 0.91468 0.91758 0.93054 0.90475 0.85436 0.84953 0.76528 0.91234 0.91827 0.86608 0.88540 0.88496 0.88121 0.88190 0.85279 0.91890 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.02 27.08 -169.99 -4.60 16.41 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.25 -5.84 5.27 56.52 0.30 -5.54 16 7 C -0.51 -13.96 9.33 -34.44 -0.32 -14.28 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.00 -0.03 2.88 -90.84 -0.26 -0.30 16 10 C -0.01 -0.12 6.61 -2.57 -0.02 -0.14 16 11 N -0.48 -9.01 6.15 -239.49 -1.47 -10.48 16 12 C 0.05 0.85 4.92 -4.97 -0.02 0.82 16 13 C -0.03 -0.39 5.44 -104.62 -0.57 -0.95 16 14 C -0.13 -1.67 9.69 -39.58 -0.38 -2.06 16 15 C -0.11 -1.33 9.98 -39.46 -0.39 -1.73 16 16 C 0.06 0.84 6.72 -39.12 -0.26 0.58 16 17 O -0.49 -6.05 13.29 -34.23 -0.45 -6.50 16 18 C 0.11 1.55 6.70 -39.12 -0.26 1.29 16 19 O -0.31 -4.31 9.92 -34.23 -0.34 -4.65 16 20 C 0.09 1.04 5.02 37.16 0.19 1.23 16 21 C -0.16 -1.58 6.06 -90.62 -0.55 -2.13 16 22 C -0.18 -1.51 10.18 -26.74 -0.27 -1.78 16 23 C -0.17 -1.51 10.25 -26.73 -0.27 -1.79 16 24 C -0.19 -2.76 8.69 -39.46 -0.34 -3.11 16 25 C 0.01 0.25 7.50 -2.76 -0.02 0.23 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.05 1.24 7.20 -51.93 -0.37 0.86 16 28 H 0.07 1.44 6.82 -51.93 -0.35 1.09 16 29 H 0.06 1.35 7.43 -51.93 -0.39 0.96 16 30 H 0.05 0.81 7.32 -51.93 -0.38 0.43 16 31 H 0.08 1.07 8.02 -51.93 -0.42 0.66 16 32 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.38 2.86 9.06 45.56 0.41 3.28 16 35 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 36 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 37 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 0.79 8.03 -51.93 -0.42 0.38 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.13 1.85 6.30 -52.48 -0.33 1.52 16 43 H 0.06 1.21 7.88 -51.92 -0.41 0.80 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -31.43 361.65 -10.57 -42.00 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.06 Total: 5.96 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -3.87 Total: -22.11 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.70 Total: -36.55 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.79 Total: -11.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.60 Total: 16.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.43 -10.57 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233224310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.160 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds