Wall clock time and date at job start Tue Mar 31 2020 08:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38245 * 119.92998 * 269.72981 * 13 12 11 15 15 C 1.38246 * 120.14758 * 179.72203 * 14 13 12 16 16 C 1.38563 * 119.99793 * 0.54944 * 15 14 13 17 17 O 1.35997 * 120.07409 * 179.74682 * 16 15 14 18 18 C 1.39159 * 119.85123 * 359.72679 * 16 15 14 19 19 O 1.35997 * 120.07063 * 180.02562 * 18 16 15 20 20 C 1.42900 * 117.00159 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47063 * 179.97438 * 20 19 18 22 22 C 1.52993 * 117.50086 * 243.61941 * 21 20 19 23 23 C 1.52997 * 60.00396 * 252.51777 * 22 21 20 24 24 C 1.38244 * 119.92356 * 90.00293 * 13 12 11 25 25 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 26 26 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 27 27 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 28 28 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 29 29 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 30 30 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 31 31 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 32 32 H 1.08008 * 119.92940 * 0.02562 * 14 13 12 33 33 H 1.08002 * 119.99855 * 180.27665 * 15 14 13 34 34 H 0.96696 * 113.99461 * 269.97883 * 17 16 15 35 35 H 1.08994 * 109.46865 * 299.99925 * 20 19 18 36 36 H 1.09001 * 109.46860 * 60.00001 * 20 19 18 37 37 H 1.09004 * 115.54975 * 29.33849 * 21 20 19 38 38 H 1.09007 * 117.50096 * 0.02562 * 22 21 20 39 39 H 1.08998 * 117.49844 * 145.02270 * 22 21 20 40 40 H 1.09000 * 117.49563 * 252.51149 * 23 22 21 41 41 H 1.08995 * 117.50052 * 107.49147 * 23 22 21 42 42 H 1.08004 * 120.00237 * 0.02562 * 24 13 12 43 43 H 1.09007 * 113.75652 * 270.36911 * 25 11 10 44 44 H 1.08993 * 113.76177 * 139.00817 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.4922 -2.4739 2.9535 14 6 7.7768 -2.8866 2.6525 15 6 8.8453 -2.4350 3.4044 16 6 8.6288 -1.5757 4.4696 17 8 9.6783 -1.1346 5.2136 18 6 7.3351 -1.1648 4.7762 19 8 7.1175 -0.3210 5.8203 20 6 5.7640 0.0591 6.0762 21 6 5.7181 1.0031 7.2793 22 6 4.9702 0.5241 8.5251 23 6 4.3652 1.6182 7.6433 24 6 6.2692 -1.6166 4.0149 25 6 4.1311 -2.6025 0.0450 26 1 -0.4849 0.8400 0.0004 27 1 3.9361 -0.5532 -0.7738 28 1 4.5830 0.0035 1.5245 29 1 3.4736 -1.2616 2.2133 30 1 4.4382 -3.0155 2.7488 31 1 5.5585 -3.9556 1.7342 32 1 7.9466 -3.5596 1.8249 33 1 9.8484 -2.7555 3.1644 34 1 9.8898 -1.6997 5.9692 35 1 5.3572 0.5653 5.2009 36 1 5.1711 -0.8303 6.2898 37 1 6.6066 1.6163 7.4299 38 1 4.5112 -0.4639 8.4878 39 1 5.3668 0.8218 9.4957 40 1 4.3638 2.6359 8.0338 41 1 3.5080 1.3503 7.0257 42 1 5.2642 -1.2995 4.2510 43 1 3.4728 -3.3581 0.4740 44 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233224310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:04 Heat of formation + Delta-G solvation = -15.829747 kcal Electronic energy + Delta-G solvation = -24461.993816 eV Core-core repulsion = 20959.925286 eV Total energy + Delta-G solvation = -3502.068530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56107 -40.53070 -39.26243 -37.77848 -37.56187 -34.77519 -32.88937 -31.22771 -30.11253 -28.62169 -27.00618 -26.88420 -24.19364 -23.58673 -23.32175 -22.27569 -21.50998 -20.41782 -19.54666 -19.10984 -18.54816 -17.44350 -17.08345 -16.92127 -16.61283 -16.37200 -16.00650 -15.55413 -15.47989 -15.22918 -14.95015 -14.79517 -14.63525 -14.02472 -13.58499 -13.50014 -13.33635 -13.13409 -12.81325 -12.69169 -12.50745 -12.36486 -12.17438 -12.01704 -11.80846 -11.71829 -11.59283 -11.37620 -11.32915 -11.14871 -10.97768 -10.69961 -9.82222 -9.64306 -9.08317 -8.31101 -6.35466 0.17416 0.37893 1.34661 1.38005 1.49166 2.00510 2.35112 2.56038 2.79509 3.02956 3.20020 3.29324 3.63238 3.77184 3.82413 3.84657 3.93120 4.03451 4.11093 4.13962 4.30889 4.32177 4.34607 4.46064 4.48227 4.57611 4.65451 4.69860 4.71292 4.73192 4.89008 4.90760 4.93555 5.01222 5.11326 5.12264 5.16687 5.28790 5.40522 5.47851 5.62543 5.65032 5.74413 6.20910 6.24130 6.28460 6.70523 6.88048 7.31466 8.84900 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.004564 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.222435 B = 6132.908176 C = 8058.439071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.515 4.515 8 H 0.037 0.963 9 C -0.017 4.017 10 C 0.005 3.995 11 N -0.477 5.477 12 C 0.057 3.943 13 C -0.043 4.043 14 C -0.124 4.124 15 C -0.102 4.102 16 C 0.059 3.941 17 O -0.498 6.498 18 C 0.089 3.911 19 O -0.316 6.316 20 C 0.086 3.914 21 C -0.170 4.170 22 C -0.166 4.166 23 C -0.168 4.168 24 C -0.196 4.196 25 C 0.023 3.977 26 H 0.266 0.734 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.402 0.598 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.061 0.939 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.046 -3.431 15.139 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.553 4.553 8 H 0.055 0.945 9 C -0.036 4.036 10 C -0.124 4.124 11 N -0.199 5.199 12 C -0.071 4.071 13 C -0.044 4.044 14 C -0.142 4.142 15 C -0.120 4.120 16 C 0.014 3.986 17 O -0.309 6.309 18 C 0.043 3.957 19 O -0.230 6.230 20 C 0.012 3.988 21 C -0.188 4.188 22 C -0.203 4.203 23 C -0.205 4.205 24 C -0.215 4.215 25 C -0.106 4.106 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.703 -2.628 14.677 23.145 hybrid contribution -1.446 0.211 0.495 1.543 sum 16.257 -2.417 15.172 22.368 Atomic orbital electron populations 1.70050 1.08231 1.28089 1.52344 1.25808 0.95258 1.02888 0.93844 0.85964 0.80218 0.78925 0.79150 1.19723 1.21441 1.15990 1.21217 0.90783 0.93035 1.50252 0.94500 1.20771 0.93575 0.95371 0.93887 1.24322 0.92791 0.95938 0.99375 1.68550 1.33189 1.08149 1.10004 1.21645 0.95248 0.97458 0.92755 1.19654 0.95514 0.95571 0.93673 1.21055 0.90711 1.01864 1.00603 1.21457 1.00896 0.95414 0.94273 1.17915 0.83877 1.00210 0.96632 1.84840 1.47668 1.53849 1.44547 1.19566 0.93925 0.93037 0.89164 1.86059 1.29741 1.60802 1.46377 1.22422 0.81108 0.97792 0.97522 1.22052 0.98125 1.02697 0.95910 1.23190 1.02598 0.99454 0.95056 1.23103 0.94735 0.99565 1.03106 1.21118 0.98278 1.03068 0.99081 1.23800 0.92685 0.96918 0.97151 0.92521 0.93019 0.91772 0.92477 0.93662 0.88266 0.83484 0.82166 0.74034 0.92557 0.91397 0.86836 0.88321 0.86953 0.86815 0.88648 0.85882 0.92028 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.96 21.45 0.30 -57.83 16 2 C 0.02 1.12 5.47 84.65 0.46 1.59 16 3 Si 0.93 43.51 27.08 68.60 1.86 45.37 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.24 -10.23 5.27 99.48 0.52 -9.71 16 7 C -0.51 -28.49 9.33 25.60 0.24 -28.25 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 C -0.02 -0.76 2.88 -10.89 -0.03 -0.79 16 10 C 0.00 0.20 6.61 86.34 0.57 0.77 16 11 N -0.48 -16.90 6.15 -911.59 -5.61 -22.50 16 12 C 0.06 1.67 4.92 85.56 0.42 2.09 16 13 C -0.04 -1.21 5.44 -19.86 -0.11 -1.32 16 14 C -0.12 -2.90 9.69 22.27 0.22 -2.69 16 15 C -0.10 -2.23 9.98 22.35 0.22 -2.01 16 16 C 0.06 1.50 6.72 22.57 0.15 1.65 16 17 O -0.50 -11.23 13.29 -79.66 -1.06 -12.29 16 18 C 0.09 2.51 6.70 22.57 0.15 2.66 16 19 O -0.32 -8.80 9.92 -79.65 -0.79 -9.59 16 20 C 0.09 2.07 5.02 71.98 0.36 2.43 16 21 C -0.17 -3.35 6.06 -10.79 -0.07 -3.42 16 22 C -0.17 -2.61 10.18 30.59 0.31 -2.30 16 23 C -0.17 -2.83 10.25 30.59 0.31 -2.51 16 24 C -0.20 -5.66 8.69 22.35 0.19 -5.47 16 25 C 0.02 0.85 7.50 86.41 0.65 1.50 16 26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.05 2.36 7.20 -2.39 -0.02 2.35 16 28 H 0.06 2.66 6.82 -2.39 -0.02 2.64 16 29 H 0.06 2.40 7.43 -2.39 -0.02 2.38 16 30 H 0.05 1.39 7.32 -2.39 -0.02 1.37 16 31 H 0.10 2.48 8.02 -2.39 -0.02 2.46 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.40 5.10 9.06 -74.06 -0.67 4.42 16 35 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 36 H 0.07 1.51 7.39 -2.39 -0.02 1.50 16 37 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.10 1.50 8.03 -2.38 -0.02 1.48 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.12 3.58 6.30 -2.91 -0.02 3.56 16 43 H 0.06 2.32 7.88 -2.38 -0.02 2.30 16 44 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -67.87 361.65 -1.09 -68.96 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.15 Total: 23.94 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.06 Total: -36.06 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -5.31 Total: -80.33 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.85 Total: -21.88 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.86 Total: 45.37 kcal Total: -67.87 -1.09 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233224310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.134 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds