Wall clock time and date at job start Tue Mar 31 2020 08:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47183 * 85.11966 * 3 2 1 5 5 H 1.48503 * 109.46982 * 205.11532 * 3 2 1 6 6 H 1.48498 * 109.47453 * 325.11897 * 3 2 1 7 7 C 1.38813 * 119.99904 * 180.27306 * 2 1 3 8 8 H 1.08002 * 119.99974 * 171.98347 * 7 2 1 9 9 N 1.36929 * 119.99952 * 351.98216 * 7 2 1 10 10 C 1.47427 * 125.65318 * 346.76444 * 9 7 2 11 11 C 1.54904 * 104.83224 * 204.09179 * 10 9 7 12 12 C 1.55157 * 101.58324 * 322.98217 * 11 10 9 13 13 H 1.08993 * 110.72564 * 276.96551 * 12 11 10 14 14 O 1.42896 * 110.71803 * 153.86525 * 12 11 10 15 15 C 1.36003 * 116.99812 * 156.30038 * 14 12 11 16 16 C 1.38562 * 120.06866 * 5.95616 * 15 14 12 17 17 C 1.38245 * 119.99428 * 179.70354 * 16 15 14 18 18 C 1.38253 * 120.14712 * 0.59706 * 17 16 15 19 19 C 1.38246 * 120.14471 * 359.67969 * 18 17 16 20 20 C 1.38557 * 120.00005 * 0.02562 * 19 18 17 21 21 O 1.35993 * 120.07296 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99848 * 0.02562 * 21 20 19 23 23 C 1.53001 * 109.47046 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.50149 * 243.75140 * 23 22 21 25 25 C 1.53000 * 117.49937 * 175.08736 * 23 22 21 26 26 C 1.47023 * 125.64845 * 166.45001 * 9 7 2 27 27 H 0.96997 * 119.99645 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.35786 * 322.92912 * 10 9 7 29 29 H 1.08997 * 110.37043 * 85.13685 * 10 9 7 30 30 H 1.08995 * 111.00886 * 81.06082 * 11 10 9 31 31 H 1.08998 * 111.00101 * 204.91097 * 11 10 9 32 32 H 1.07992 * 120.00545 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.92989 * 180.30055 * 17 16 15 34 34 H 1.08004 * 119.92449 * 179.70618 * 18 17 16 35 35 H 1.08006 * 119.99591 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47290 * 299.99980 * 22 21 20 37 37 H 1.08994 * 109.47117 * 60.00676 * 22 21 20 38 38 H 1.09007 * 115.55047 * 29.41472 * 23 22 21 39 39 H 1.09002 * 117.49443 * 359.97438 * 24 23 22 40 40 H 1.08994 * 117.49955 * 145.02421 * 24 23 22 41 41 H 1.09000 * 117.49740 * 214.98105 * 25 23 22 42 42 H 1.08998 * 117.50044 * 0.02562 * 25 23 22 43 43 H 1.09005 * 109.88022 * 298.39738 * 26 9 7 44 44 H 1.09001 * 109.88376 * 59.55843 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3946 2.1060 1.3950 5 1 3.5956 1.4125 -0.5943 6 1 1.5031 2.6207 -0.8006 7 6 2.0103 -1.2022 -0.0057 8 1 3.0824 -1.2061 -0.1362 9 7 1.3356 -2.3830 0.1540 10 6 -0.0595 -2.5206 0.6101 11 6 -0.1432 -3.9484 1.2050 12 6 0.7747 -4.7428 0.2388 13 1 0.2287 -5.0369 -0.6575 14 8 1.3253 -5.8884 0.8918 15 6 1.7215 -6.9200 0.0991 16 6 1.6987 -6.7846 -1.2797 17 6 2.1075 -7.8321 -2.0839 18 6 2.5280 -9.0204 -1.5159 19 6 2.5477 -9.1640 -0.1411 20 6 2.1450 -8.1159 0.6708 21 8 2.1634 -8.2558 2.0234 22 6 2.6102 -9.5111 2.5398 23 6 2.5610 -9.4802 4.0687 24 6 3.8869 -9.6110 4.8210 25 6 2.8930 -10.7753 4.8125 26 6 1.8806 -3.7233 -0.1070 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2835 -1.7771 1.3751 29 1 -0.7455 -2.4173 -0.2306 30 1 0.2474 -3.9714 2.2223 31 1 -1.1651 -4.3261 1.1720 32 1 1.3657 -5.8593 -1.7260 33 1 2.0939 -7.7237 -3.1584 34 1 2.8422 -9.8380 -2.1477 35 1 2.8771 -10.0932 0.3001 36 1 1.9624 -10.3066 2.1719 37 1 3.6334 -9.6950 2.2126 38 1 1.7987 -8.8324 4.5016 39 1 4.7941 -9.7196 4.2266 40 1 3.9965 -9.0499 5.7489 41 1 2.3493 -10.9795 5.7349 42 1 3.1469 -11.6493 4.2127 43 1 2.1552 -3.8135 -1.1580 44 1 2.7532 -3.8978 0.5225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233506422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:24 Heat of formation + Delta-G solvation = 6.765658 kcal Electronic energy + Delta-G solvation = -24387.889034 eV Core-core repulsion = 20886.800313 eV Total energy + Delta-G solvation = -3501.088720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49620 -38.93790 -37.66358 -36.61499 -35.95979 -32.31003 -30.29244 -30.00526 -29.06198 -27.47337 -27.34686 -24.55281 -22.78265 -22.69987 -22.20947 -20.86523 -20.28233 -19.92278 -18.54976 -17.35618 -16.94554 -16.34950 -16.00116 -15.38896 -15.14431 -14.82165 -14.65882 -14.49285 -14.36281 -13.77533 -13.68209 -13.10111 -12.65531 -12.38670 -12.36079 -11.92223 -11.85581 -11.76318 -11.65442 -11.37756 -11.20997 -11.09915 -10.89503 -10.78390 -10.73402 -10.43360 -10.24345 -10.18572 -10.00443 -9.81073 -9.72775 -8.67183 -8.60919 -7.67513 -6.80939 -5.76756 -3.11240 1.33427 1.51373 2.99593 3.39820 3.44545 3.47022 3.50801 3.53575 3.79732 4.42375 4.49156 4.55220 4.67330 4.82313 4.92436 4.98770 5.03885 5.15545 5.25792 5.27139 5.31302 5.33330 5.44733 5.46023 5.49538 5.57683 5.64310 5.68286 5.78170 5.79754 5.92033 6.20935 6.24871 6.32026 6.44676 6.51147 6.53264 6.59645 6.67443 6.79144 7.28978 7.42931 7.54669 7.74468 7.86577 8.23569 9.16991 9.78076 10.45597 11.36763 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.003202 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.148981 B = 8743.334752 C = 9676.657550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.175 3.825 11 C -0.137 4.137 12 C 0.069 3.931 13 H 0.077 0.923 14 O -0.293 6.293 15 C 0.115 3.885 16 C -0.174 4.174 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.177 4.177 20 C 0.094 3.906 21 O -0.299 6.299 22 C 0.091 3.909 23 C -0.155 4.155 24 C -0.176 4.176 25 C -0.172 4.172 26 C 0.119 3.881 27 H 0.254 0.746 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.026 0.974 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -22.625 2.925 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.013 3.987 13 H 0.095 0.905 14 O -0.206 6.206 15 C 0.069 3.931 16 C -0.192 4.192 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.196 4.196 20 C 0.048 3.952 21 O -0.213 6.213 22 C 0.016 3.984 23 C -0.173 4.173 24 C -0.213 4.213 25 C -0.209 4.209 26 C -0.008 4.008 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.044 0.956 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.501 -22.237 3.278 22.748 hybrid contribution 0.513 0.721 -0.402 0.972 sum 4.014 -21.516 2.876 22.075 Atomic orbital electron populations 1.69936 1.04999 1.25328 1.56252 1.24878 0.95675 0.97891 1.01790 0.86083 0.78713 0.83306 0.77562 1.21517 1.20513 1.21686 1.19031 0.90854 0.82395 1.43549 0.90610 1.44342 1.10879 0.99845 1.77578 1.21411 0.86244 0.89927 0.97429 1.23166 0.97280 0.97823 0.99240 1.23640 0.95237 0.83401 0.96446 0.90528 1.86259 1.75683 1.24234 1.34412 1.18366 0.98204 0.87046 0.89507 1.21278 1.05085 1.01304 0.91573 1.20864 0.99818 0.92904 0.99720 1.20768 1.02027 0.97956 0.93896 1.20982 1.06034 0.98135 0.94426 1.18226 1.01654 0.92539 0.82741 1.86185 1.81953 1.35492 1.17664 1.22244 0.98933 0.85053 0.92173 1.22104 1.00925 1.01864 0.92387 1.23108 0.93489 1.01889 1.02771 1.22996 1.03527 0.92079 1.02276 1.21724 0.94855 0.86472 0.97702 0.93608 0.91013 0.94899 0.90794 0.91409 0.84253 0.85748 0.85974 0.85340 0.91875 0.92148 0.86384 0.88568 0.88342 0.88221 0.88642 0.95591 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 10.76 55.49 0.60 -26.41 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.55 10.23 -15.06 -0.15 -6.70 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.60 -15.77 3.39 -170.06 -0.58 -16.35 16 10 C 0.17 4.28 5.38 -2.53 -0.01 4.26 16 11 C -0.14 -2.71 6.81 -24.58 -0.17 -2.88 16 12 C 0.07 1.33 2.74 -24.89 -0.07 1.26 16 13 H 0.08 1.35 6.29 -51.93 -0.33 1.02 16 14 O -0.29 -5.57 9.66 -34.25 -0.33 -5.90 16 15 C 0.12 1.93 6.68 -39.12 -0.26 1.67 16 16 C -0.17 -2.58 8.89 -39.46 -0.35 -2.93 16 17 C -0.11 -1.41 10.04 -39.57 -0.40 -1.81 16 18 C -0.13 -1.44 10.04 -39.57 -0.40 -1.84 16 19 C -0.18 -2.12 9.04 -39.46 -0.36 -2.48 16 20 C 0.09 1.41 6.70 -39.12 -0.26 1.15 16 21 O -0.30 -4.48 9.92 -34.22 -0.34 -4.81 16 22 C 0.09 0.96 5.02 37.16 0.19 1.14 16 23 C -0.15 -1.48 6.05 -90.62 -0.55 -2.03 16 24 C -0.18 -1.43 10.18 -26.69 -0.27 -1.71 16 25 C -0.17 -1.21 10.26 -26.69 -0.27 -1.49 16 26 C 0.12 2.64 6.79 -3.06 -0.02 2.62 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.07 1.92 7.11 -51.93 -0.37 1.55 16 29 H 0.03 0.85 8.01 -51.93 -0.42 0.43 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.14 2.07 5.59 -52.49 -0.29 1.78 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.13 1.18 6.30 -52.48 -0.33 0.85 16 36 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 37 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 38 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.03 0.57 7.77 -51.93 -0.40 0.16 16 44 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -31.85 358.20 -10.41 -42.27 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.69 Total: 0.61 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.45 Total: -12.01 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.02 Total: -42.76 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.67 Total: -10.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -10.41 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233506422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.031 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds