Wall clock time and date at job start Tue Mar 31 2020 08:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47183 * 85.11966 * 3 2 1 5 5 H 1.48503 * 109.46982 * 205.11532 * 3 2 1 6 6 H 1.48498 * 109.47453 * 325.11897 * 3 2 1 7 7 C 1.38813 * 119.99904 * 180.27306 * 2 1 3 8 8 H 1.08002 * 119.99974 * 171.98347 * 7 2 1 9 9 N 1.36929 * 119.99952 * 351.98216 * 7 2 1 10 10 C 1.47427 * 125.65318 * 346.76444 * 9 7 2 11 11 C 1.54904 * 104.83224 * 204.09179 * 10 9 7 12 12 C 1.55157 * 101.58324 * 322.98217 * 11 10 9 13 13 H 1.08993 * 110.72564 * 276.96551 * 12 11 10 14 14 O 1.42896 * 110.71803 * 153.86525 * 12 11 10 15 15 C 1.36003 * 116.99812 * 156.30038 * 14 12 11 16 16 C 1.38562 * 120.06866 * 5.95616 * 15 14 12 17 17 C 1.38245 * 119.99428 * 179.70354 * 16 15 14 18 18 C 1.38253 * 120.14712 * 0.59706 * 17 16 15 19 19 C 1.38246 * 120.14471 * 359.67969 * 18 17 16 20 20 C 1.38557 * 120.00005 * 0.02562 * 19 18 17 21 21 O 1.35993 * 120.07296 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99848 * 0.02562 * 21 20 19 23 23 C 1.53001 * 109.47046 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.50149 * 243.75140 * 23 22 21 25 25 C 1.53000 * 117.49937 * 175.08736 * 23 22 21 26 26 C 1.47023 * 125.64845 * 166.45001 * 9 7 2 27 27 H 0.96997 * 119.99645 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.35786 * 322.92912 * 10 9 7 29 29 H 1.08997 * 110.37043 * 85.13685 * 10 9 7 30 30 H 1.08995 * 111.00886 * 81.06082 * 11 10 9 31 31 H 1.08998 * 111.00101 * 204.91097 * 11 10 9 32 32 H 1.07992 * 120.00545 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.92989 * 180.30055 * 17 16 15 34 34 H 1.08004 * 119.92449 * 179.70618 * 18 17 16 35 35 H 1.08006 * 119.99591 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47290 * 299.99980 * 22 21 20 37 37 H 1.08994 * 109.47117 * 60.00676 * 22 21 20 38 38 H 1.09007 * 115.55047 * 29.41472 * 23 22 21 39 39 H 1.09002 * 117.49443 * 359.97438 * 24 23 22 40 40 H 1.08994 * 117.49955 * 145.02421 * 24 23 22 41 41 H 1.09000 * 117.49740 * 214.98105 * 25 23 22 42 42 H 1.08998 * 117.50044 * 0.02562 * 25 23 22 43 43 H 1.09005 * 109.88022 * 298.39738 * 26 9 7 44 44 H 1.09001 * 109.88376 * 59.55843 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3946 2.1060 1.3950 5 1 3.5956 1.4125 -0.5943 6 1 1.5031 2.6207 -0.8006 7 6 2.0103 -1.2022 -0.0057 8 1 3.0824 -1.2061 -0.1362 9 7 1.3356 -2.3830 0.1540 10 6 -0.0595 -2.5206 0.6101 11 6 -0.1432 -3.9484 1.2050 12 6 0.7747 -4.7428 0.2388 13 1 0.2287 -5.0369 -0.6575 14 8 1.3253 -5.8884 0.8918 15 6 1.7215 -6.9200 0.0991 16 6 1.6987 -6.7846 -1.2797 17 6 2.1075 -7.8321 -2.0839 18 6 2.5280 -9.0204 -1.5159 19 6 2.5477 -9.1640 -0.1411 20 6 2.1450 -8.1159 0.6708 21 8 2.1634 -8.2558 2.0234 22 6 2.6102 -9.5111 2.5398 23 6 2.5610 -9.4802 4.0687 24 6 3.8869 -9.6110 4.8210 25 6 2.8930 -10.7753 4.8125 26 6 1.8806 -3.7233 -0.1070 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2835 -1.7771 1.3751 29 1 -0.7455 -2.4173 -0.2306 30 1 0.2474 -3.9714 2.2223 31 1 -1.1651 -4.3261 1.1720 32 1 1.3657 -5.8593 -1.7260 33 1 2.0939 -7.7237 -3.1584 34 1 2.8422 -9.8380 -2.1477 35 1 2.8771 -10.0932 0.3001 36 1 1.9624 -10.3066 2.1719 37 1 3.6334 -9.6950 2.2126 38 1 1.7987 -8.8324 4.5016 39 1 4.7941 -9.7196 4.2266 40 1 3.9965 -9.0499 5.7489 41 1 2.3493 -10.9795 5.7349 42 1 3.1469 -11.6493 4.2127 43 1 2.1552 -3.8135 -1.1580 44 1 2.7532 -3.8978 0.5225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233506422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:23 Heat of formation + Delta-G solvation = -10.172652 kcal Electronic energy + Delta-G solvation = -24388.623534 eV Core-core repulsion = 20886.800313 eV Total energy + Delta-G solvation = -3501.823220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.61385 -40.16525 -38.75549 -37.70694 -37.30290 -34.32821 -31.50043 -31.27494 -30.61973 -29.09556 -28.30531 -26.53376 -23.94260 -23.35824 -23.20616 -22.20584 -21.85394 -21.20325 -19.67966 -18.98965 -18.42273 -17.41071 -17.01420 -16.80101 -16.60790 -16.21379 -15.85925 -15.55502 -15.49922 -15.14251 -15.06124 -14.36195 -14.32285 -13.72292 -13.67735 -13.55843 -13.27139 -12.86293 -12.73321 -12.60661 -12.46294 -12.44220 -12.27621 -12.18362 -12.02165 -11.93435 -11.84778 -11.60532 -11.51219 -11.37910 -10.89344 -10.74880 -9.69647 -8.93054 -8.78330 -7.93481 -5.31322 0.32132 0.48537 1.44961 1.47068 1.56409 2.13579 2.16479 2.47806 2.77951 2.88001 3.26851 3.56752 3.64330 3.70223 3.88306 3.89993 3.91219 4.00813 4.01632 4.08612 4.16241 4.22073 4.38314 4.48101 4.49124 4.55110 4.57623 4.65168 4.76217 4.77314 4.84722 4.92224 4.96516 4.99293 5.19026 5.22786 5.25691 5.36050 5.37828 5.50552 5.55811 5.62141 5.80205 6.13221 6.20044 6.67496 7.01778 7.66771 8.34147 9.18867 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.003202 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.148981 B = 8743.334752 C = 9676.657550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.123 4.123 12 C 0.087 3.913 13 H 0.094 0.906 14 O -0.311 6.311 15 C 0.071 3.929 16 C -0.183 4.183 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.171 4.171 20 C 0.079 3.921 21 O -0.330 6.330 22 C 0.088 3.912 23 C -0.179 4.179 24 C -0.182 4.182 25 C -0.149 4.149 26 C 0.120 3.880 27 H 0.252 0.748 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.031 0.969 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -25.377 2.170 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.057 3.943 11 C -0.162 4.162 12 C 0.031 3.969 13 H 0.111 0.889 14 O -0.225 6.225 15 C 0.026 3.974 16 C -0.202 4.202 17 C -0.136 4.136 18 C -0.132 4.132 19 C -0.190 4.190 20 C 0.034 3.966 21 O -0.244 6.244 22 C 0.013 3.987 23 C -0.198 4.198 24 C -0.219 4.219 25 C -0.185 4.185 26 C -0.006 4.006 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.049 0.951 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.619 -25.030 2.523 25.577 hybrid contribution 0.233 1.429 -0.181 1.459 sum 4.852 -23.601 2.343 24.208 Atomic orbital electron populations 1.70116 1.06347 1.25887 1.56894 1.25732 0.96625 1.01161 1.01630 0.85024 0.77832 0.78774 0.77446 1.21229 1.19303 1.21544 1.19367 0.91240 0.83749 1.43731 0.90683 1.44630 1.11555 1.00793 1.77873 1.21194 0.85268 0.91921 0.95922 1.22989 0.99353 0.95128 0.98698 1.23307 0.93786 0.83205 0.96651 0.88878 1.86200 1.76572 1.24576 1.35165 1.18764 1.00994 0.87302 0.90309 1.21347 1.05647 1.01976 0.91195 1.21223 0.98985 0.92553 1.00867 1.21264 0.99631 0.98334 0.93994 1.21381 1.04662 0.98273 0.94677 1.18512 1.01991 0.92784 0.83295 1.86150 1.82403 1.37962 1.17925 1.22496 0.99866 0.83867 0.92457 1.22104 1.01478 1.03922 0.92257 1.23200 0.93303 1.02753 1.02593 1.23107 1.01793 0.91518 1.02120 1.21779 0.95508 0.85724 0.97572 0.93901 0.94162 0.96718 0.91323 0.88372 0.85109 0.83198 0.82108 0.82258 0.90214 0.90843 0.88368 0.87962 0.88442 0.87281 0.86817 0.95125 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 10.76 21.65 0.23 -56.92 16 2 C -0.06 -3.33 5.40 84.86 0.46 -2.87 16 3 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.25 -14.75 10.23 84.03 0.86 -13.89 16 8 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 9 N -0.62 -33.85 3.39 -691.96 -2.35 -36.20 16 10 C 0.18 9.25 5.38 86.85 0.47 9.72 16 11 C -0.12 -4.99 6.81 31.98 0.22 -4.77 16 12 C 0.09 3.41 2.74 31.79 0.09 3.49 16 13 H 0.09 3.30 6.29 -2.39 -0.02 3.29 16 14 O -0.31 -12.10 9.66 -79.73 -0.77 -12.87 16 15 C 0.07 2.39 6.68 22.57 0.15 2.54 16 16 C -0.18 -5.30 8.89 22.35 0.20 -5.10 16 17 C -0.12 -2.59 10.04 22.27 0.22 -2.37 16 18 C -0.11 -2.11 10.04 22.28 0.22 -1.89 16 19 C -0.17 -3.58 9.04 22.35 0.20 -3.38 16 20 C 0.08 2.32 6.70 22.57 0.15 2.47 16 21 O -0.33 -9.81 9.92 -79.61 -0.79 -10.60 16 22 C 0.09 1.70 5.02 71.98 0.36 2.06 16 23 C -0.18 -3.29 6.05 -10.79 -0.07 -3.36 16 24 C -0.18 -2.75 10.18 30.62 0.31 -2.43 16 25 C -0.15 -1.77 10.26 30.62 0.31 -1.45 16 26 C 0.12 5.50 6.79 86.73 0.59 6.09 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.04 2.26 7.11 -2.38 -0.02 2.25 16 29 H 0.01 0.80 8.01 -2.39 -0.02 0.78 16 30 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.13 3.89 5.59 -2.91 -0.02 3.87 16 33 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 2.25 6.30 -2.91 -0.02 2.23 16 36 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 37 H 0.07 1.19 7.40 -2.39 -0.02 1.17 16 38 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.03 1.37 7.77 -2.38 -0.02 1.35 16 44 H 0.02 1.05 8.05 -2.39 -0.02 1.03 16 Total: -1.00 -71.56 358.20 4.09 -67.48 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.99 Total: 15.85 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.75 Total: -15.15 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -2.11 Total: -93.12 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.56 Total: -23.47 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.56 4.09 -67.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233506422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.302 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds