Wall clock time and date at job start Tue Mar 31 2020 08:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47147 * 90.00018 * 3 2 1 5 5 H 1.48495 * 109.46806 * 209.99774 * 3 2 1 6 6 H 1.48500 * 109.47200 * 329.99799 * 3 2 1 7 7 C 1.38808 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00282 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.65198 * 359.69132 * 9 7 2 11 11 C 1.55125 * 104.72575 * 155.81635 * 10 9 7 12 12 C 1.55156 * 101.48327 * 37.30037 * 11 10 9 13 13 H 1.09003 * 110.72277 * 82.69335 * 12 11 10 14 14 O 1.42904 * 110.71757 * 205.96935 * 12 11 10 15 15 C 1.35996 * 116.99844 * 198.57939 * 14 12 11 16 16 C 1.38570 * 120.07199 * 354.64446 * 15 14 12 17 17 C 1.38243 * 119.99564 * 180.02562 * 16 15 14 18 18 C 1.38251 * 120.15040 * 359.97438 * 17 16 15 19 19 C 1.38239 * 120.14509 * 0.02562 * 18 17 16 20 20 C 1.38563 * 119.99959 * 359.71498 * 19 18 17 21 21 O 1.35996 * 120.07607 * 180.28182 * 20 19 18 22 22 C 1.42899 * 117.00048 * 0.27216 * 21 20 19 23 23 C 1.52994 * 109.47503 * 180.02562 * 22 21 20 24 24 C 1.53004 * 117.49850 * 243.75059 * 23 22 21 25 25 C 1.53002 * 117.50238 * 175.09104 * 23 22 21 26 26 C 1.47027 * 125.64799 * 180.02562 * 9 7 2 27 27 H 0.97009 * 120.00093 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.36869 * 274.74951 * 10 9 7 29 29 H 1.09005 * 110.36252 * 37.06539 * 10 9 7 30 30 H 1.08996 * 111.19650 * 279.19684 * 11 10 9 31 31 H 1.08996 * 110.93702 * 155.28859 * 11 10 9 32 32 H 1.07995 * 119.99983 * 0.02562 * 16 15 14 33 33 H 1.08007 * 119.92516 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.92774 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.00296 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.47273 * 300.00912 * 22 21 20 37 37 H 1.09002 * 109.47215 * 60.00106 * 22 21 20 38 38 H 1.09004 * 115.55098 * 29.41695 * 23 22 21 39 39 H 1.08992 * 117.50196 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.49725 * 145.01983 * 24 23 22 41 41 H 1.09001 * 117.49983 * 214.98116 * 25 23 22 42 42 H 1.09002 * 117.49830 * 359.97170 * 25 23 22 43 43 H 1.08998 * 109.87693 * 300.43589 * 26 9 7 44 44 H 1.08996 * 109.88193 * 61.44572 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0065 11 6 -0.4022 -3.9322 -0.6109 12 6 0.7783 -4.7524 -0.0271 13 1 0.5468 -5.0981 0.9804 14 8 1.0995 -5.8533 -0.8796 15 6 1.8251 -6.8657 -0.3337 16 6 2.3137 -6.7518 0.9580 17 6 3.0516 -7.7816 1.5111 18 6 3.3034 -8.9268 0.7786 19 6 2.8190 -9.0468 -0.5105 20 6 2.0741 -8.0206 -1.0691 21 8 1.5919 -8.1394 -2.3351 22 6 1.8862 -9.3528 -3.0302 23 6 1.2664 -9.3030 -4.4281 24 6 0.1753 -10.3250 -4.7539 25 6 1.5668 -10.4659 -5.3760 26 6 1.9318 -3.7274 -0.0005 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5222 -2.4893 1.0269 29 1 -0.6024 -1.7572 -0.6049 30 1 -0.3536 -3.8979 -1.6993 31 1 -1.3592 -4.3330 -0.2771 32 1 2.1180 -5.8585 1.5325 33 1 3.4322 -7.6915 2.5179 34 1 3.8807 -9.7289 1.2141 35 1 3.0174 -9.9422 -1.0809 36 1 2.9666 -9.4694 -3.1161 37 1 1.4724 -10.1970 -2.4788 38 1 1.1716 -8.3090 -4.8653 39 1 -0.1007 -11.0330 -3.9725 40 1 -0.6370 -10.0034 -5.4056 41 1 1.6694 -10.2370 -6.4367 42 1 2.2064 -11.2662 -5.0038 43 1 2.5577 -3.8510 -0.8843 44 1 2.5310 -3.8631 0.8998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233506434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:27 Heat of formation + Delta-G solvation = -7.364195 kcal Electronic energy + Delta-G solvation = -24411.261010 eV Core-core repulsion = 20909.559573 eV Total energy + Delta-G solvation = -3501.701437 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61947 -40.16922 -38.74859 -37.70578 -37.30758 -34.31829 -31.52252 -31.27263 -30.60938 -29.03766 -28.30694 -26.55528 -23.92742 -23.36048 -23.20736 -22.15263 -21.86017 -21.21888 -19.65224 -19.02463 -18.42566 -17.46676 -17.00207 -16.85804 -16.55103 -16.21413 -15.86647 -15.61047 -15.39489 -15.23765 -14.95528 -14.37476 -14.29034 -13.73627 -13.66517 -13.53006 -13.17571 -12.93915 -12.73931 -12.62818 -12.45978 -12.44645 -12.22636 -12.16738 -12.04557 -11.93005 -11.80456 -11.62467 -11.42804 -11.38354 -10.89478 -10.79657 -9.69898 -8.97781 -8.78751 -7.81916 -5.28094 0.32006 0.48336 1.45818 1.48227 1.57138 2.13651 2.17223 2.48165 2.77558 2.88021 3.28649 3.58443 3.64126 3.70107 3.88610 3.90912 3.91553 4.00886 4.01745 4.08190 4.16142 4.21287 4.38157 4.47947 4.49111 4.54998 4.57619 4.64636 4.76145 4.77460 4.84834 4.92572 4.96849 4.99182 5.18933 5.22713 5.25411 5.37159 5.40529 5.52738 5.55442 5.71584 5.80217 6.18321 6.25033 6.67455 7.04797 7.69575 8.33195 9.20291 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003193 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.948491 B = 8768.395967 C = 9682.678432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.985 3.015 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.156 3.844 11 C -0.122 4.122 12 C 0.087 3.913 13 H 0.093 0.907 14 O -0.312 6.312 15 C 0.071 3.929 16 C -0.182 4.182 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.172 4.172 20 C 0.079 3.921 21 O -0.330 6.330 22 C 0.088 3.912 23 C -0.181 4.181 24 C -0.176 4.176 25 C -0.151 4.151 26 C 0.119 3.881 27 H 0.250 0.750 28 H 0.004 0.996 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.019 0.981 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -25.079 -3.159 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.813 3.187 4 H -0.210 1.210 5 H -0.196 1.196 6 H -0.216 1.216 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.350 5.350 10 C 0.031 3.969 11 C -0.160 4.160 12 C 0.030 3.970 13 H 0.111 0.889 14 O -0.226 6.226 15 C 0.026 3.974 16 C -0.201 4.201 17 C -0.136 4.136 18 C -0.132 4.132 19 C -0.190 4.190 20 C 0.034 3.966 21 O -0.245 6.245 22 C 0.013 3.987 23 C -0.200 4.200 24 C -0.213 4.213 25 C -0.188 4.188 26 C -0.006 4.006 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.037 0.963 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.898 -24.723 -3.489 25.271 hybrid contribution 0.325 1.337 0.210 1.392 sum 4.223 -23.386 -3.279 23.989 Atomic orbital electron populations 1.69997 1.06191 1.25373 1.58100 1.25674 0.96744 1.01025 1.02152 0.84987 0.77511 0.78631 0.77616 1.20969 1.19633 1.21624 1.19438 0.91009 0.83541 1.43421 0.90306 1.44676 1.02813 1.00454 1.87088 1.21827 0.84069 0.93665 0.97289 1.23021 0.96849 0.95359 1.00800 1.23335 0.95350 0.84143 0.94132 0.88923 1.86207 1.68346 1.28239 1.39850 1.18773 0.97386 0.88012 0.93236 1.21366 1.02773 1.02137 0.93833 1.21225 0.98199 0.92885 1.01326 1.21261 1.00090 0.98576 0.93300 1.21379 1.00967 0.98624 0.98032 1.18525 0.99280 0.93467 0.85377 1.86152 1.73036 1.41024 1.24278 1.22494 1.00350 0.85031 0.90784 1.22096 1.05999 0.96675 0.95196 1.23199 0.92837 1.01317 1.03981 1.23109 0.98636 0.98371 0.98695 1.21814 0.94920 0.85729 0.98173 0.93982 0.97849 0.89893 0.91706 0.88554 0.85101 0.83158 0.82089 0.82267 0.90604 0.90459 0.88637 0.87684 0.88329 0.87444 0.86821 0.96344 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.96 10.08 21.65 0.22 -56.74 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.99 46.32 29.55 68.60 2.03 48.34 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.25 -14.30 10.27 84.03 0.86 -13.44 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -33.95 3.39 -691.54 -2.35 -36.29 16 10 C 0.16 8.00 5.91 86.93 0.51 8.51 16 11 C -0.12 -5.04 6.82 32.06 0.22 -4.82 16 12 C 0.09 3.43 2.76 31.78 0.09 3.52 16 13 H 0.09 3.28 6.60 -2.39 -0.02 3.27 16 14 O -0.31 -12.33 9.66 -79.64 -0.77 -13.10 16 15 C 0.07 2.40 6.64 22.57 0.15 2.55 16 16 C -0.18 -5.32 8.78 22.35 0.20 -5.12 16 17 C -0.12 -2.61 10.04 22.27 0.22 -2.38 16 18 C -0.11 -2.13 10.04 22.27 0.22 -1.91 16 19 C -0.17 -3.63 9.04 22.35 0.20 -3.43 16 20 C 0.08 2.33 6.70 22.57 0.15 2.48 16 21 O -0.33 -9.98 9.92 -79.64 -0.79 -10.77 16 22 C 0.09 1.74 5.02 71.98 0.36 2.10 16 23 C -0.18 -3.40 6.05 -10.79 -0.07 -3.47 16 24 C -0.18 -2.57 10.18 30.62 0.31 -2.26 16 25 C -0.15 -1.86 10.25 30.62 0.31 -1.54 16 26 C 0.12 5.47 6.51 86.73 0.56 6.03 16 27 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 28 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.08 4.78 5.85 -2.38 -0.01 4.76 16 30 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.13 3.90 5.32 -2.91 -0.02 3.89 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.16 2.30 6.30 -2.91 -0.02 2.28 16 36 H 0.08 1.26 7.65 -2.38 -0.02 1.24 16 37 H 0.08 1.22 7.41 -2.39 -0.02 1.20 16 38 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 44 H 0.03 1.49 7.44 -2.39 -0.02 1.48 16 Total: -1.00 -71.10 356.35 4.11 -66.99 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.99 Total: 17.95 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.78 Total: -16.38 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -2.13 Total: -93.03 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.56 Total: -23.87 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -71.10 4.11 -66.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233506434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.625 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds