Wall clock time and date at job start Tue Mar 31 2020 08:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86798 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46881 * 274.65086 * 3 2 1 5 5 H 1.48498 * 109.46918 * 34.64945 * 3 2 1 6 6 H 1.48494 * 109.46925 * 154.65048 * 3 2 1 7 7 C 1.39943 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00557 * 162.76267 * 7 2 1 9 9 C 1.41400 * 120.00201 * 342.76405 * 7 2 1 10 10 C 1.40733 * 120.24296 * 334.69256 * 9 7 2 11 11 C 1.37594 * 119.74480 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.25039 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50306 * 359.68039 * 12 11 10 14 14 C 1.37640 * 120.24487 * 0.60002 * 13 12 11 15 15 C 1.50694 * 120.12912 * 179.70325 * 14 13 12 16 16 N 1.46904 * 109.47164 * 259.72169 * 15 14 13 17 17 C 1.46856 * 111.00247 * 169.99649 * 16 15 14 18 18 C 1.53117 * 109.46743 * 173.77291 * 17 16 15 19 19 C 1.52734 * 109.29151 * 58.53948 * 18 17 16 20 20 C 1.52735 * 110.12004 * 303.29504 * 19 18 17 21 21 C 1.46851 * 110.99608 * 45.67593 * 16 15 14 22 22 O 1.43398 * 110.12453 * 64.94382 * 19 18 17 23 23 C 1.43965 * 107.00170 * 143.71552 * 22 19 18 24 24 C 1.54486 * 105.16608 * 358.62188 * 23 22 19 25 25 O 1.43975 * 109.85228 * 182.18437 * 19 18 17 26 26 H 0.97002 * 120.00460 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12740 * 359.95620 * 10 9 7 28 28 H 1.08006 * 119.87174 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.74985 * 179.97438 * 12 11 10 30 30 H 1.07993 * 119.88239 * 180.30086 * 13 12 11 31 31 H 1.09004 * 109.47412 * 139.72899 * 15 14 13 32 32 H 1.08994 * 109.47657 * 19.72156 * 15 14 13 33 33 H 1.09000 * 109.46900 * 53.77942 * 17 16 15 34 34 H 1.08999 * 109.47452 * 293.77536 * 17 16 15 35 35 H 1.08997 * 109.50004 * 298.59547 * 18 17 16 36 36 H 1.09004 * 109.52722 * 178.50202 * 18 17 16 37 37 H 1.09000 * 109.49712 * 176.63295 * 20 19 18 38 38 H 1.08992 * 109.50252 * 296.74007 * 20 19 18 39 39 H 1.09000 * 109.47045 * 306.22193 * 21 16 15 40 40 H 1.08997 * 109.46975 * 66.21950 * 21 16 15 41 41 H 1.09006 * 110.32217 * 117.56610 * 23 22 19 42 42 H 1.08994 * 110.32724 * 239.66878 * 23 22 19 43 43 H 1.08997 * 110.71818 * 96.66982 * 24 23 22 44 44 H 1.08995 * 110.71616 * 219.94679 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3914 2.1031 -1.3955 5 1 1.4923 2.6222 0.7960 6 1 3.5854 1.4136 0.5994 7 6 2.0079 -1.2120 -0.0005 8 1 3.0515 -1.2330 -0.2777 9 6 1.3485 -2.4092 0.3618 10 6 0.2208 -2.3708 1.2029 11 6 -0.4133 -3.5419 1.5485 12 6 0.0550 -4.7568 1.0718 13 6 1.1611 -4.8061 0.2379 14 6 1.8146 -3.6477 -0.1163 15 6 3.0209 -3.7050 -1.0177 16 7 4.2424 -3.6006 -0.2083 17 6 5.4349 -3.8887 -1.0156 18 6 6.6917 -3.6197 -0.1833 19 6 6.6630 -4.4920 1.0701 20 6 5.3861 -4.2275 1.8652 21 6 4.1706 -4.4768 0.9680 22 8 6.7416 -5.8775 0.7089 23 6 7.5330 -6.5315 1.7181 24 6 7.9501 -5.4094 2.6946 25 8 7.8147 -4.2116 1.8874 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1453 -1.4256 1.5759 28 1 -1.2786 -3.5149 2.1943 29 1 -0.4487 -5.6712 1.3486 30 1 1.5144 -5.7575 -0.1315 31 1 2.9837 -2.8786 -1.7274 32 1 3.0244 -4.6502 -1.5604 33 1 5.4396 -3.2486 -1.8979 34 1 5.4206 -4.9337 -1.3249 35 1 6.7191 -2.5690 0.1052 36 1 7.5770 -3.8586 -0.7727 37 1 5.3474 -4.8969 2.7246 38 1 5.3789 -3.1931 2.2085 39 1 3.2582 -4.2634 1.5248 40 1 4.1645 -5.5180 0.6457 41 1 6.9385 -7.2833 2.2373 42 1 8.4144 -6.9901 1.2699 43 1 7.2776 -5.3743 3.5517 44 1 8.9823 -5.5437 3.0181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235516621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:44 Heat of formation + Delta-G solvation = -65.169251 kcal Electronic energy + Delta-G solvation = -25873.569987 eV Core-core repulsion = 22369.361935 eV Total energy + Delta-G solvation = -3504.208052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84314 -38.35553 -36.75867 -34.95970 -33.58576 -32.69091 -30.69345 -30.08230 -29.39823 -28.50505 -25.54653 -24.57971 -23.38296 -22.81975 -22.08322 -20.90763 -19.59881 -19.19717 -17.08350 -16.97669 -16.52309 -15.99668 -15.49530 -15.16928 -14.76415 -14.56245 -14.14090 -14.01975 -13.60950 -13.50674 -13.29780 -12.90031 -12.75606 -12.54515 -12.18273 -11.99219 -11.75469 -11.57755 -11.43259 -11.16081 -11.07735 -10.95506 -10.91623 -10.73540 -10.57202 -10.43250 -10.30787 -10.21512 -9.46208 -9.39490 -9.22444 -9.07742 -7.64408 -7.31295 -7.25393 -6.69719 -4.26117 2.81805 2.98666 3.12603 3.18639 3.29930 3.48907 3.90858 4.00222 4.47420 4.54213 4.66948 4.72389 4.82350 4.93563 5.15718 5.22535 5.44489 5.48968 5.60795 5.65766 5.69726 5.77059 5.87354 5.94587 6.06000 6.09542 6.17133 6.25756 6.28113 6.32349 6.49498 6.52995 6.54488 6.70527 6.91150 7.07334 7.17341 7.31372 7.43299 7.66322 7.70640 7.79624 7.99381 8.12832 8.19782 8.36970 8.73759 8.99412 9.05975 10.24739 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.004965 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.800450 B = 5638.320691 C = 6685.297987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.445 4.445 8 H 0.093 0.907 9 C 0.130 3.870 10 C -0.165 4.165 11 C -0.105 4.105 12 C -0.248 4.248 13 C -0.085 4.085 14 C -0.202 4.202 15 C 0.127 3.873 16 N -0.526 5.526 17 C 0.060 3.940 18 C -0.101 4.101 19 C 0.256 3.744 20 C -0.142 4.142 21 C 0.068 3.932 22 O -0.373 6.373 23 C 0.020 3.980 24 C 0.014 3.986 25 O -0.371 6.371 26 H 0.278 0.722 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.015 0.985 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.168 -7.468 2.717 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.474 4.474 8 H 0.111 0.889 9 C 0.127 3.873 10 C -0.185 4.185 11 C -0.124 4.124 12 C -0.267 4.267 13 C -0.104 4.104 14 C -0.204 4.204 15 C 0.001 3.999 16 N -0.250 5.250 17 C -0.068 4.068 18 C -0.139 4.139 19 C 0.180 3.820 20 C -0.181 4.181 21 C -0.060 4.060 22 O -0.294 6.294 23 C -0.057 4.057 24 C -0.063 4.063 25 O -0.291 6.291 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.047 -6.703 2.665 14.042 hybrid contribution 0.136 -0.248 0.023 0.284 sum 12.183 -6.952 2.689 14.282 Atomic orbital electron populations 1.69844 1.07645 1.29018 1.35601 1.25972 0.94612 1.01372 0.92375 0.86381 0.81005 0.80924 0.78930 1.19748 1.20363 1.18236 1.19779 0.98559 0.90452 1.38616 0.88907 1.17376 0.90352 0.91500 0.88100 1.21345 0.99347 0.96609 1.01152 1.20667 0.98506 0.93464 0.99785 1.20273 1.01967 0.96042 1.08442 1.20376 0.96154 0.95678 0.98158 1.19429 1.00584 0.93667 1.06721 1.20626 0.86663 0.98498 0.94088 1.62029 1.01901 1.53180 1.07911 1.21974 0.89695 0.99268 0.95895 1.21588 0.98616 0.99915 0.93817 1.23524 0.86168 0.81530 0.90789 1.22306 0.94032 1.03525 0.98207 1.21925 0.97794 0.93971 0.92281 1.88904 1.72220 1.20775 1.47529 1.23913 0.95970 0.96088 0.89726 1.24242 1.03228 0.83889 0.94949 1.89453 1.48812 1.37294 1.53536 0.91103 0.86640 0.89785 0.89906 0.90035 0.90382 0.96696 0.90403 0.94793 0.89069 0.90766 0.91741 0.89218 0.88748 0.95359 0.90177 0.90263 0.90753 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.39 10.98 55.55 0.61 -19.78 16 2 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 3 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.44 -11.37 8.19 -37.74 -0.31 -11.68 16 8 H 0.09 2.34 6.84 -52.49 -0.36 1.98 16 9 C 0.13 3.33 5.57 -106.82 -0.59 2.73 16 10 C -0.17 -4.25 8.69 -38.87 -0.34 -4.59 16 11 C -0.11 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.25 -5.56 10.05 -39.29 -0.39 -5.96 16 13 C -0.08 -1.88 8.64 -39.66 -0.34 -2.23 16 14 C -0.20 -4.68 3.73 -103.91 -0.39 -5.07 16 15 C 0.13 2.60 4.60 -4.98 -0.02 2.57 16 16 N -0.53 -9.83 4.53 -236.00 -1.07 -10.90 16 17 C 0.06 0.96 5.32 -3.79 -0.02 0.94 16 18 C -0.10 -1.50 5.52 -26.81 -0.15 -1.65 16 19 C 0.26 3.81 1.05 -27.00 -0.03 3.78 16 20 C -0.14 -2.25 5.24 -26.81 -0.14 -2.39 16 21 C 0.07 1.24 4.72 -3.79 -0.02 1.22 16 22 O -0.37 -5.45 10.09 -59.27 -0.60 -6.05 16 23 C 0.02 0.21 8.06 37.94 0.31 0.51 16 24 C 0.01 0.14 7.35 37.94 0.28 0.42 16 25 O -0.37 -5.26 11.22 -59.27 -0.67 -5.93 16 26 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 27 H 0.12 3.09 6.20 -52.48 -0.33 2.76 16 28 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.08 1.65 8.03 -52.49 -0.42 1.23 16 31 H 0.08 1.66 7.33 -51.93 -0.38 1.28 16 32 H 0.01 0.29 7.93 -51.93 -0.41 -0.12 16 33 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 34 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.92 7.19 -51.93 -0.37 0.54 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.09 1.95 6.01 -51.93 -0.31 1.64 16 40 H 0.03 0.52 7.88 -51.93 -0.41 0.11 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.69 7.48 -51.93 -0.39 0.31 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -27.85 343.77 -10.95 -38.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.73 Total: 7.48 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.65 Total: -22.53 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: -0.46 Total: -30.68 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.26 Total: -11.97 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.85 -10.95 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235516621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.377 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds