Wall clock time and date at job start Tue Mar 31 2020 08:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86798 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46881 * 274.65086 * 3 2 1 5 5 H 1.48498 * 109.46918 * 34.64945 * 3 2 1 6 6 H 1.48494 * 109.46925 * 154.65048 * 3 2 1 7 7 C 1.39943 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00557 * 162.76267 * 7 2 1 9 9 C 1.41400 * 120.00201 * 342.76405 * 7 2 1 10 10 C 1.40733 * 120.24296 * 334.69256 * 9 7 2 11 11 C 1.37594 * 119.74480 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.25039 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50306 * 359.68039 * 12 11 10 14 14 C 1.37640 * 120.24487 * 0.60002 * 13 12 11 15 15 C 1.50694 * 120.12912 * 179.70325 * 14 13 12 16 16 N 1.46904 * 109.47164 * 259.72169 * 15 14 13 17 17 C 1.46856 * 111.00247 * 169.99649 * 16 15 14 18 18 C 1.53117 * 109.46743 * 173.77291 * 17 16 15 19 19 C 1.52734 * 109.29151 * 58.53948 * 18 17 16 20 20 C 1.52735 * 110.12004 * 303.29504 * 19 18 17 21 21 C 1.46851 * 110.99608 * 45.67593 * 16 15 14 22 22 O 1.43398 * 110.12453 * 64.94382 * 19 18 17 23 23 C 1.43965 * 107.00170 * 143.71552 * 22 19 18 24 24 C 1.54486 * 105.16608 * 358.62188 * 23 22 19 25 25 O 1.43975 * 109.85228 * 182.18437 * 19 18 17 26 26 H 0.97002 * 120.00460 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12740 * 359.95620 * 10 9 7 28 28 H 1.08006 * 119.87174 * 179.97438 * 11 10 9 29 29 H 1.08006 * 119.74985 * 179.97438 * 12 11 10 30 30 H 1.07993 * 119.88239 * 180.30086 * 13 12 11 31 31 H 1.09004 * 109.47412 * 139.72899 * 15 14 13 32 32 H 1.08994 * 109.47657 * 19.72156 * 15 14 13 33 33 H 1.09000 * 109.46900 * 53.77942 * 17 16 15 34 34 H 1.08999 * 109.47452 * 293.77536 * 17 16 15 35 35 H 1.08997 * 109.50004 * 298.59547 * 18 17 16 36 36 H 1.09004 * 109.52722 * 178.50202 * 18 17 16 37 37 H 1.09000 * 109.49712 * 176.63295 * 20 19 18 38 38 H 1.08992 * 109.50252 * 296.74007 * 20 19 18 39 39 H 1.09000 * 109.47045 * 306.22193 * 21 16 15 40 40 H 1.08997 * 109.46975 * 66.21950 * 21 16 15 41 41 H 1.09006 * 110.32217 * 117.56610 * 23 22 19 42 42 H 1.08994 * 110.32724 * 239.66878 * 23 22 19 43 43 H 1.08997 * 110.71818 * 96.66982 * 24 23 22 44 44 H 1.08995 * 110.71616 * 219.94679 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3914 2.1031 -1.3955 5 1 1.4923 2.6222 0.7960 6 1 3.5854 1.4136 0.5994 7 6 2.0079 -1.2120 -0.0005 8 1 3.0515 -1.2330 -0.2777 9 6 1.3485 -2.4092 0.3618 10 6 0.2208 -2.3708 1.2029 11 6 -0.4133 -3.5419 1.5485 12 6 0.0550 -4.7568 1.0718 13 6 1.1611 -4.8061 0.2379 14 6 1.8146 -3.6477 -0.1163 15 6 3.0209 -3.7050 -1.0177 16 7 4.2424 -3.6006 -0.2083 17 6 5.4349 -3.8887 -1.0156 18 6 6.6917 -3.6197 -0.1833 19 6 6.6630 -4.4920 1.0701 20 6 5.3861 -4.2275 1.8652 21 6 4.1706 -4.4768 0.9680 22 8 6.7416 -5.8775 0.7089 23 6 7.5330 -6.5315 1.7181 24 6 7.9501 -5.4094 2.6946 25 8 7.8147 -4.2116 1.8874 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1453 -1.4256 1.5759 28 1 -1.2786 -3.5149 2.1943 29 1 -0.4487 -5.6712 1.3486 30 1 1.5144 -5.7575 -0.1315 31 1 2.9837 -2.8786 -1.7274 32 1 3.0244 -4.6502 -1.5604 33 1 5.4396 -3.2486 -1.8979 34 1 5.4206 -4.9337 -1.3249 35 1 6.7191 -2.5690 0.1052 36 1 7.5770 -3.8586 -0.7727 37 1 5.3474 -4.8969 2.7246 38 1 5.3789 -3.1931 2.2085 39 1 3.2582 -4.2634 1.5248 40 1 4.1645 -5.5180 0.6457 41 1 6.9385 -7.2833 2.2373 42 1 8.4144 -6.9901 1.2699 43 1 7.2776 -5.3743 3.5517 44 1 8.9823 -5.5437 3.0181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235516621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:43 Heat of formation + Delta-G solvation = -80.823062 kcal Electronic energy + Delta-G solvation = -25874.248787 eV Core-core repulsion = 22369.361935 eV Total energy + Delta-G solvation = -3504.886852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90831 -39.97972 -38.29034 -35.98012 -35.44813 -34.08600 -32.00265 -31.60825 -31.14870 -29.67689 -27.31673 -26.21282 -24.43672 -23.92618 -23.45797 -22.77111 -21.18304 -20.61161 -18.96096 -18.01501 -17.56488 -17.18179 -16.98309 -16.48233 -16.37741 -16.01738 -15.77119 -15.38617 -15.07388 -14.85630 -14.52030 -14.34024 -14.16645 -13.83340 -13.57657 -13.38916 -13.25990 -12.98113 -12.83488 -12.75478 -12.67812 -12.53529 -12.27097 -12.20927 -12.19195 -11.99436 -11.73334 -11.29233 -11.11318 -11.04356 -10.94095 -10.50625 -9.23844 -9.19441 -8.97781 -8.54730 -6.19300 1.02424 1.14635 1.41807 1.52494 1.59208 2.26315 2.53629 2.81644 2.88873 3.16201 3.58170 3.69976 3.76730 3.90068 4.01320 4.15064 4.24303 4.26608 4.36659 4.41441 4.47340 4.52314 4.59451 4.65159 4.66134 4.71298 4.77332 4.80380 4.87738 4.95084 5.00504 5.08786 5.13975 5.17942 5.22193 5.32413 5.42802 5.57991 5.81967 6.04688 6.07156 6.20939 6.25711 6.33766 6.39584 6.50330 6.82978 7.09420 7.16698 8.41705 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.004965 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.800450 B = 5638.320691 C = 6685.297987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.089 0.911 9 C 0.103 3.897 10 C -0.194 4.194 11 C -0.113 4.113 12 C -0.245 4.245 13 C -0.089 4.089 14 C -0.201 4.201 15 C 0.135 3.865 16 N -0.537 5.537 17 C 0.063 3.937 18 C -0.100 4.100 19 C 0.261 3.739 20 C -0.138 4.138 21 C 0.078 3.922 22 O -0.392 6.392 23 C 0.013 3.987 24 C 0.009 3.991 25 O -0.387 6.387 26 H 0.284 0.716 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.906 -8.725 2.890 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.214 4.214 11 C -0.131 4.131 12 C -0.265 4.265 13 C -0.108 4.108 14 C -0.203 4.203 15 C 0.008 3.992 16 N -0.262 5.262 17 C -0.064 4.064 18 C -0.138 4.138 19 C 0.184 3.816 20 C -0.176 4.176 21 C -0.050 4.050 22 O -0.314 6.314 23 C -0.063 4.063 24 C -0.067 4.067 25 O -0.308 6.308 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.792 -7.981 2.845 16.186 hybrid contribution -0.397 -0.033 0.017 0.399 sum 13.395 -8.014 2.861 15.869 Atomic orbital electron populations 1.69904 1.08935 1.30057 1.36632 1.26702 0.95267 1.04283 0.91662 0.85367 0.79389 0.76888 0.79145 1.18948 1.19697 1.18429 1.19893 0.98485 0.91401 1.40042 0.89334 1.17686 0.90884 0.92704 0.88720 1.21319 1.00646 0.96706 1.02684 1.20913 0.98948 0.93305 0.99943 1.20629 1.01744 0.96606 1.07475 1.20663 0.95920 0.96341 0.97846 1.19743 1.01152 0.93243 1.06149 1.20478 0.86685 0.98472 0.93552 1.61955 1.02085 1.53860 1.08324 1.22006 0.88938 0.99464 0.96041 1.21561 0.98497 0.99604 0.94134 1.23276 0.85820 0.81981 0.90495 1.22230 0.93943 1.02944 0.98473 1.21749 0.97567 0.93630 0.92038 1.88877 1.73059 1.20534 1.48934 1.24203 0.96594 0.96214 0.89326 1.24539 1.05331 0.82289 0.94571 1.89433 1.48149 1.39126 1.54101 0.90600 0.88614 0.87924 0.87089 0.87672 0.91767 0.95482 0.89596 0.94660 0.89858 0.89056 0.90222 0.90776 0.91755 0.95389 0.88606 0.88381 0.90051 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.79 10.98 21.83 0.24 -43.55 16 2 C 0.04 1.77 5.15 85.26 0.44 2.21 16 3 Si 0.97 39.20 29.59 68.60 2.03 41.23 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.47 -24.74 8.19 23.46 0.19 -24.54 16 8 H 0.09 4.60 6.84 -2.91 -0.02 4.58 16 9 C 0.10 5.43 5.57 -21.29 -0.12 5.31 16 10 C -0.19 -10.31 8.69 22.73 0.20 -10.11 16 11 C -0.11 -5.32 10.02 22.22 0.22 -5.10 16 12 C -0.25 -10.70 10.05 22.46 0.23 -10.48 16 13 C -0.09 -3.87 8.64 22.22 0.19 -3.67 16 14 C -0.20 -9.39 3.73 -19.41 -0.07 -9.46 16 15 C 0.13 5.50 4.60 85.55 0.39 5.90 16 16 N -0.54 -20.03 4.53 -900.58 -4.08 -24.10 16 17 C 0.06 1.95 5.32 86.35 0.46 2.41 16 18 C -0.10 -2.83 5.52 30.54 0.17 -2.66 16 19 C 0.26 7.34 1.05 30.42 0.03 7.38 16 20 C -0.14 -4.26 5.24 30.54 0.16 -4.10 16 21 C 0.08 2.81 4.72 86.35 0.41 3.22 16 22 O -0.39 -10.57 10.09 -126.00 -1.27 -11.84 16 23 C 0.01 0.23 8.06 72.49 0.58 0.81 16 24 C 0.01 0.15 7.35 72.49 0.53 0.68 16 25 O -0.39 -10.21 11.22 -126.00 -1.41 -11.62 16 26 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 27 H 0.10 5.38 6.20 -2.91 -0.02 5.36 16 28 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.11 4.03 8.03 -2.91 -0.02 4.01 16 31 H 0.06 2.78 7.33 -2.39 -0.02 2.77 16 32 H 0.03 1.03 7.93 -2.39 -0.02 1.01 16 33 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 34 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.16 7.19 -2.39 -0.02 2.15 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.06 2.69 6.01 -2.39 -0.01 2.67 16 40 H 0.03 1.00 7.88 -2.39 -0.02 0.98 16 41 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.30 7.48 -2.39 -0.02 1.28 16 44 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -60.71 343.77 0.51 -60.20 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.98 Total: 31.88 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 4.02 Total: -42.20 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -3.84 Total: -67.65 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -2.69 Total: -23.46 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -60.71 0.51 -60.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235516621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.621 kcal (2) G-P(sol) polarization free energy of solvation -60.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds