Wall clock time and date at job start Tue Mar 31 2020 08:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48499 * 109.47453 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47349 * 300.00490 * 3 2 1 6 6 H 1.48505 * 109.47063 * 60.00063 * 3 2 1 7 7 C 1.39889 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00415 * 197.94696 * 7 2 1 9 9 C 1.41217 * 119.99748 * 17.93850 * 7 2 1 10 10 C 1.40836 * 120.17891 * 24.54947 * 9 7 2 11 11 C 1.36438 * 119.81434 * 179.97438 * 10 9 7 12 12 C 1.39314 * 120.18290 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81738 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99704 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46583 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47042 * 55.00145 * 15 14 13 17 17 O 1.42897 * 109.47459 * 295.00034 * 15 14 13 18 18 C 1.53006 * 109.46781 * 174.99841 * 15 14 13 19 19 N 1.46898 * 109.46784 * 185.00125 * 18 15 14 20 20 C 1.46908 * 110.99575 * 180.02562 * 19 18 15 21 21 H 1.08999 * 110.34596 * 35.83502 * 20 19 18 22 22 C 1.51096 * 110.38848 * 273.54347 * 20 19 18 23 23 C 1.30523 * 111.10676 * 257.63163 * 22 20 19 24 24 C 1.51100 * 111.10464 * 0.24061 * 23 22 20 25 25 C 1.54644 * 110.38340 * 158.24396 * 20 19 18 26 26 C 1.39317 * 120.36308 * 0.27497 * 12 11 10 27 27 C 1.36437 * 120.18544 * 359.44296 * 26 12 11 28 28 H 0.96996 * 120.00416 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.09659 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.90816 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46892 * 60.00361 * 14 13 12 32 32 H 1.09002 * 109.47142 * 299.99697 * 14 13 12 33 33 H 0.96704 * 113.99423 * 300.00026 * 17 15 14 34 34 H 1.08999 * 109.46880 * 65.00357 * 18 15 14 35 35 H 1.09001 * 109.47133 * 305.00016 * 18 15 14 36 36 H 1.00898 * 111.00053 * 56.04564 * 19 18 15 37 37 H 1.08000 * 124.44454 * 77.64615 * 22 20 19 38 38 H 1.08003 * 124.44681 * 179.97438 * 23 22 20 39 39 H 1.08991 * 110.38716 * 102.13389 * 24 23 22 40 40 H 1.09003 * 110.38702 * 224.51183 * 24 23 22 41 41 H 1.08999 * 111.03268 * 212.21076 * 25 20 19 42 42 H 1.08997 * 111.03635 * 336.10511 * 25 20 19 43 43 H 1.08003 * 119.90704 * 179.70224 * 26 12 11 44 44 H 1.07998 * 120.09491 * 180.27843 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3966 -1.2124 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3538 -2.4045 -0.3778 10 6 0.2248 -2.3573 -1.2184 11 6 -0.4016 -3.5147 -1.5786 12 6 0.0730 -4.7407 -1.1177 13 8 -0.5552 -5.8871 -1.4810 14 6 -0.0180 -7.1101 -0.9733 15 6 -0.8527 -8.2853 -1.4862 16 1 -0.8997 -8.2499 -2.5746 17 8 -2.1743 -8.2012 -0.9493 18 6 -0.2061 -9.6004 -1.0462 19 7 -0.9385 -10.7281 -1.6378 20 6 -0.3449 -12.0103 -1.2357 21 1 0.0193 -11.9542 -0.2099 22 6 0.7786 -12.3873 -2.1732 23 6 0.3946 -13.2996 -3.0240 24 6 -1.0507 -13.6789 -2.7996 25 6 -1.3782 -13.1515 -1.3816 26 6 1.1861 -4.7957 -0.2817 27 6 1.8274 -3.6481 0.0833 28 1 -0.4850 0.8400 0.0004 29 1 -0.1442 -1.4077 -1.5769 30 1 -1.2672 -3.4803 -2.2234 31 1 -0.0448 -7.0941 0.1163 32 1 1.0127 -7.2217 -1.3099 33 1 -2.2087 -8.2269 0.0168 34 1 -0.2394 -9.6758 0.0407 35 1 0.8310 -9.6252 -1.3806 36 1 -0.9774 -10.6465 -2.6427 37 1 1.7693 -11.9583 -2.1430 38 1 1.0257 -13.7242 -3.7907 39 1 -1.6886 -13.2000 -3.5423 40 1 -1.1693 -14.7618 -2.8375 41 1 -1.2193 -13.9219 -0.6271 42 1 -2.3965 -12.7656 -1.3352 43 1 1.5449 -5.7499 0.0752 44 1 2.6928 -3.6928 0.7278 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338488657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:29 Heat of formation + Delta-G solvation = -52.145219 kcal Electronic energy + Delta-G solvation = -23418.947122 eV Core-core repulsion = 19915.303835 eV Total energy + Delta-G solvation = -3503.643287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57565 -38.92203 -37.45476 -36.05005 -34.11314 -33.31367 -30.53715 -29.59262 -29.26489 -28.95113 -27.13136 -25.02332 -24.15797 -22.02481 -20.90572 -20.62409 -20.48100 -19.20660 -17.38338 -17.32729 -16.75890 -16.24482 -16.17856 -15.67719 -15.21141 -14.73650 -14.55125 -14.03621 -13.96343 -13.81557 -13.25267 -12.90533 -12.71279 -12.27874 -12.25748 -12.14500 -12.10914 -11.82933 -11.76580 -11.55801 -11.38820 -11.21528 -11.15422 -10.94235 -10.77452 -10.59409 -9.98927 -9.90709 -9.80442 -9.54925 -9.33454 -9.02188 -8.60345 -7.64370 -7.03065 -6.72264 -4.25423 1.82201 2.76966 2.95024 3.08836 3.13899 3.20449 3.58386 3.95249 4.18873 4.27979 4.41015 4.51478 4.62026 4.82605 4.88000 4.94513 5.03359 5.10901 5.20139 5.31010 5.36584 5.45810 5.47534 5.58359 5.61646 5.67408 5.78377 5.88151 6.03552 6.05940 6.10656 6.23008 6.44358 6.70444 6.74832 6.97747 7.09797 7.11320 7.18700 7.46561 7.55789 7.77632 7.79486 8.00823 8.20542 8.45570 8.65620 8.90019 8.98849 10.22171 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.002098 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.635398 B =13342.104896 C =13644.037213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.115 3.885 16 H 0.102 0.898 17 O -0.541 6.541 18 C 0.030 3.970 19 N -0.664 5.664 20 C 0.105 3.895 21 H 0.082 0.918 22 C -0.208 4.208 23 C -0.148 4.148 24 C -0.106 4.106 25 C -0.116 4.116 26 C -0.168 4.168 27 C -0.199 4.199 28 H 0.280 0.720 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.371 0.629 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.344 0.656 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -21.304 -2.815 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.055 3.945 16 H 0.120 0.880 17 O -0.345 6.345 18 C -0.100 4.100 19 N -0.293 5.293 20 C -0.004 4.004 21 H 0.100 0.900 22 C -0.228 4.228 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.187 4.187 27 C -0.219 4.219 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.507 -21.111 -3.037 21.382 hybrid contribution 1.844 0.688 0.253 1.985 sum 0.338 -20.423 -2.784 20.615 Atomic orbital electron populations 1.69839 1.07504 1.29056 1.36024 1.25884 0.94722 1.01244 0.92404 0.86291 0.80948 0.81116 0.78514 1.18501 1.19741 1.20078 1.19484 0.98096 0.91236 1.40500 0.90533 1.17605 0.91866 0.92119 0.89897 1.20988 0.98493 0.96320 0.99491 1.19848 1.00780 0.90221 1.02934 1.18626 0.96931 0.84862 1.04799 1.85889 1.54691 1.12030 1.70679 1.23112 0.97223 0.85187 0.98367 1.21837 0.82971 0.90091 0.99601 0.87996 1.86631 1.26128 1.96324 1.25383 1.22608 0.95795 0.91007 1.00562 1.60598 1.53128 1.00117 1.15497 1.21412 0.91029 0.89929 0.98075 0.89994 1.24001 0.99742 0.99607 0.99417 1.23397 0.97006 0.97656 0.98695 1.21480 0.94014 1.01126 0.97710 1.22501 1.00157 0.96583 0.96189 1.20392 0.98029 0.97713 1.02571 1.20552 1.03121 0.92537 1.05651 0.90953 0.85648 0.88413 0.92875 0.92625 0.78219 0.90312 0.94016 0.83770 0.86190 0.86027 0.90375 0.91129 0.90898 0.89549 0.88990 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.96 55.54 0.61 -20.20 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.35 9.04 -37.83 -0.34 -12.70 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 11 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 O -0.32 -6.58 10.09 -23.58 -0.24 -6.82 16 14 C 0.04 0.59 4.36 37.16 0.16 0.75 16 15 C 0.12 1.45 3.43 -26.73 -0.09 1.36 16 16 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 17 O -0.54 -7.60 13.25 -40.09 -0.53 -8.13 16 18 C 0.03 0.29 5.15 -3.82 -0.02 0.27 16 19 N -0.66 -6.27 6.23 -106.82 -0.67 -6.94 16 20 C 0.11 0.87 3.21 -67.80 -0.22 0.65 16 21 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 22 C -0.21 -1.65 10.03 -35.70 -0.36 -2.00 16 23 C -0.15 -1.07 10.77 -35.70 -0.38 -1.46 16 24 C -0.11 -0.72 6.82 -26.74 -0.18 -0.90 16 25 C -0.12 -0.86 6.91 -24.92 -0.17 -1.03 16 26 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 27 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.13 3.38 6.16 -52.48 -0.32 3.06 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 32 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.37 4.06 9.05 45.56 0.41 4.47 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.34 3.28 8.49 -39.29 -0.33 2.95 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 43 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -29.61 364.22 -10.36 -39.97 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.97 Total: 11.54 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -4.02 Total: -28.64 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.77 Total: -14.95 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.61 -10.36 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338488657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.178 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds