Wall clock time and date at job start Tue Mar 31 2020 08:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 119.99211 * 2 1 4 4 H 1.48501 * 109.47077 * 269.99719 * 3 2 1 5 5 H 1.48491 * 109.47311 * 30.00110 * 3 2 1 6 6 H 1.48501 * 109.46686 * 150.00519 * 3 2 1 7 7 C 1.39883 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99782 * 197.93255 * 7 2 1 9 9 C 1.41207 * 120.00610 * 17.93343 * 7 2 1 10 10 C 1.40840 * 120.17704 * 24.54311 * 9 7 2 11 11 C 1.36437 * 119.80903 * 179.97438 * 10 9 7 12 12 C 1.39309 * 120.18818 * 0.02562 * 11 10 9 13 13 O 1.35673 * 119.81831 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99993 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47178 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47590 * 54.99395 * 15 14 13 17 17 O 1.42902 * 109.47141 * 294.99609 * 15 14 13 18 18 C 1.52998 * 109.47357 * 175.00044 * 15 14 13 19 19 N 1.46902 * 109.47487 * 184.99799 * 18 15 14 20 20 C 1.46897 * 111.00381 * 179.97438 * 19 18 15 21 21 H 1.09003 * 110.43306 * 324.10523 * 20 19 18 22 22 C 1.51103 * 110.38788 * 86.45227 * 20 19 18 23 23 C 1.30521 * 111.10183 * 102.13091 * 22 20 19 24 24 C 1.51099 * 111.10482 * 0.24527 * 23 22 20 25 25 C 1.54632 * 104.72860 * 16.43643 * 24 23 22 26 26 C 1.39316 * 120.36315 * 0.27465 * 12 11 10 27 27 C 1.36436 * 120.18575 * 359.43614 * 26 12 11 28 28 H 0.96993 * 120.00976 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.09397 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.90253 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.47635 * 60.00138 * 14 13 12 32 32 H 1.09006 * 109.47287 * 300.00046 * 14 13 12 33 33 H 0.96699 * 114.00201 * 300.00592 * 17 15 14 34 34 H 1.08993 * 109.47596 * 64.99430 * 18 15 14 35 35 H 1.09003 * 109.46811 * 304.99265 * 18 15 14 36 36 H 1.00901 * 110.99762 * 303.95118 * 19 18 15 37 37 H 1.08002 * 124.44419 * 282.39646 * 22 20 19 38 38 H 1.07998 * 124.44725 * 180.26146 * 23 22 20 39 39 H 1.09004 * 110.38511 * 135.24707 * 24 23 22 40 40 H 1.09002 * 110.38824 * 257.50819 * 24 23 22 41 41 H 1.09007 * 111.03372 * 93.39775 * 25 24 23 42 42 H 1.08993 * 111.03623 * 217.33595 * 25 24 23 43 43 H 1.08002 * 119.90697 * 179.70468 * 26 12 11 44 44 H 1.07998 * 120.09257 * 180.27994 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.4901 2.0466 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5402 1.4404 0.6999 7 6 2.0083 -1.2114 -0.0005 8 1 3.0490 -1.2341 0.2875 9 6 1.3539 -2.4045 -0.3776 10 6 0.2247 -2.3575 -1.2181 11 6 -0.4015 -3.5150 -1.5781 12 6 0.0727 -4.7408 -1.1164 13 8 -0.5560 -5.8872 -1.4787 14 6 -0.0193 -7.1101 -0.9703 15 6 -0.8537 -8.2854 -1.4832 16 1 -0.9003 -8.2505 -2.5716 17 8 -2.1756 -8.2010 -0.9470 18 6 -0.2077 -9.6004 -1.0422 19 7 -0.9397 -10.7283 -1.6338 20 6 -0.3459 -12.0103 -1.2318 21 1 0.7383 -11.9222 -1.1620 22 6 -0.9230 -12.4670 0.0879 23 6 -1.8188 -13.3997 -0.0886 24 6 -1.9842 -13.7248 -1.5549 25 6 -0.7312 -13.1251 -2.2343 26 6 1.1853 -4.7956 -0.2797 27 6 1.8266 -3.6479 0.0850 28 1 -0.4851 0.8399 0.0004 29 1 -0.1439 -1.4080 -1.5771 30 1 -1.2672 -3.4807 -2.2229 31 1 -0.0458 -7.0933 0.1192 32 1 1.0113 -7.2223 -1.3070 33 1 -2.2106 -8.2262 0.0191 34 1 -0.2413 -9.6753 0.0446 35 1 0.8297 -9.6254 -1.3762 36 1 -1.9185 -10.6910 -1.3914 37 1 -0.6352 -12.0704 1.0504 38 1 -2.3696 -13.8764 0.7087 39 1 -2.0166 -14.8042 -1.7032 40 1 -2.8894 -13.2610 -1.9469 41 1 0.0606 -13.8692 -2.3213 42 1 -0.9784 -12.7034 -3.2085 43 1 1.5438 -5.7496 0.0777 44 1 2.6916 -3.6925 0.7301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338488659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:32 Heat of formation + Delta-G solvation = -53.903282 kcal Electronic energy + Delta-G solvation = -23434.508011 eV Core-core repulsion = 19930.788488 eV Total energy + Delta-G solvation = -3503.719523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.59489 -38.92360 -37.52513 -36.07845 -34.08800 -33.31370 -30.58384 -29.59271 -29.28419 -28.95326 -27.13769 -25.02468 -24.15448 -21.97869 -20.89836 -20.62309 -20.49635 -19.20813 -17.40023 -17.33892 -16.68915 -16.42117 -16.17797 -15.74887 -15.22058 -14.82300 -14.53228 -13.96978 -13.88364 -13.79349 -13.30884 -12.86717 -12.79174 -12.31650 -12.24922 -12.14068 -12.09205 -11.84332 -11.77389 -11.56610 -11.39283 -11.21409 -11.15136 -10.96879 -10.78727 -10.58757 -10.02667 -9.95306 -9.81270 -9.54690 -9.32783 -9.02268 -8.64150 -7.64079 -7.02875 -6.71872 -4.25287 1.82744 2.78096 2.95329 3.08850 3.12086 3.21798 3.58367 3.95415 4.19844 4.27884 4.38795 4.45948 4.62113 4.83037 4.88268 4.98191 5.03705 5.08610 5.16044 5.34949 5.36861 5.45167 5.48776 5.58192 5.62294 5.67751 5.78243 5.86316 6.06096 6.07486 6.10843 6.23521 6.44942 6.71226 6.75014 6.98009 7.11474 7.14799 7.18994 7.46510 7.55843 7.62928 7.79429 8.00930 8.20834 8.45795 8.65811 8.90222 8.99122 10.22560 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.050106 B = 0.002076 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.675673 B =13486.718377 C =13679.054184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.040 3.960 15 C 0.111 3.889 16 H 0.115 0.885 17 O -0.551 6.551 18 C 0.031 3.969 19 N -0.669 5.669 20 C 0.105 3.895 21 H 0.082 0.918 22 C -0.207 4.207 23 C -0.148 4.148 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.168 4.168 27 C -0.199 4.199 28 H 0.280 0.720 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.369 0.631 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.350 0.650 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -21.399 -0.760 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.132 0.868 17 O -0.355 6.355 18 C -0.098 4.098 19 N -0.300 5.300 20 C -0.005 4.005 21 H 0.100 0.900 22 C -0.227 4.227 23 C -0.167 4.167 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.187 4.187 27 C -0.218 4.218 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.216 0.784 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.215 -21.164 -2.118 21.385 hybrid contribution 0.511 0.628 2.034 2.189 sum -1.705 -20.536 -0.085 20.607 Atomic orbital electron populations 1.69831 1.07494 1.29147 1.35993 1.25882 0.94726 1.01230 0.92405 0.86320 0.80426 0.80720 0.79271 1.19318 1.20394 1.18737 1.19460 0.98093 0.91243 1.40560 0.90555 1.17602 0.91876 0.92115 0.89892 1.20988 0.98487 0.96317 0.99479 1.19848 1.00801 0.90222 1.02919 1.18624 0.96943 0.84860 1.04763 1.85889 1.54654 1.12035 1.70699 1.23083 0.97433 0.85145 0.98113 1.21975 0.82192 0.90180 1.00463 0.86753 1.86644 1.27138 1.96458 1.25275 1.22569 0.99117 0.91014 0.97132 1.60588 1.07495 1.00318 1.61564 1.21428 0.98959 0.89724 0.90364 0.89983 1.23979 0.99982 0.99354 0.99385 1.23386 0.97940 0.97730 0.97642 1.21451 0.99141 1.01073 0.92683 1.22502 0.97227 0.96578 0.99161 1.20391 0.98043 0.97713 1.02572 1.20553 1.03123 0.92541 1.05631 0.90908 0.85649 0.88410 0.93100 0.92355 0.78408 0.94615 0.89782 0.83064 0.86243 0.86030 0.91122 0.90384 0.90841 0.89620 0.88989 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.82 10.96 55.54 0.61 -20.21 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.37 9.04 -37.84 -0.34 -12.71 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 11 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 13 O -0.32 -6.58 10.09 -23.57 -0.24 -6.82 16 14 C 0.04 0.61 4.36 37.16 0.16 0.77 16 15 C 0.11 1.41 3.49 -26.73 -0.09 1.31 16 16 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 17 O -0.55 -7.33 12.82 -40.08 -0.51 -7.85 16 18 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16 19 N -0.67 -6.39 6.29 -106.73 -0.67 -7.06 16 20 C 0.10 0.87 3.20 -67.72 -0.22 0.66 16 21 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 22 C -0.21 -1.64 10.03 -35.69 -0.36 -2.00 16 23 C -0.15 -1.07 10.77 -35.70 -0.38 -1.46 16 24 C -0.11 -0.73 6.81 -26.83 -0.18 -0.91 16 25 C -0.12 -0.86 6.91 -24.93 -0.17 -1.03 16 26 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 27 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 32 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 33 H 0.37 3.72 9.05 45.56 0.41 4.14 16 34 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.35 3.49 8.05 -39.29 -0.32 3.17 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -29.34 363.52 -10.34 -39.68 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.95 Total: 11.68 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -4.03 Total: -28.65 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.75 Total: -14.67 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.34 -10.34 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338488659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.224 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds