Wall clock time and date at job start Tue Mar 31 2020 08:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00195 * 2 1 4 4 H 1.48504 * 109.47241 * 240.00205 * 3 2 1 5 5 H 1.48506 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47573 * 119.99929 * 3 2 1 7 7 C 1.37885 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00186 * 186.39076 * 7 2 1 9 9 C 1.50697 * 119.99716 * 6.38982 * 7 2 1 10 10 H 1.09006 * 109.47685 * 333.97761 * 9 7 2 11 11 C 1.50703 * 109.47147 * 213.97600 * 9 7 2 12 12 O 1.21273 * 120.00004 * 240.00085 * 11 9 7 13 13 N 1.34779 * 119.99644 * 59.99815 * 11 9 7 14 14 C 1.46503 * 119.99553 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.46940 * 35.00882 * 14 13 11 16 16 C 1.52998 * 109.46697 * 155.00146 * 14 13 11 17 17 C 1.52997 * 109.47480 * 295.00087 * 16 14 13 18 18 O 1.42907 * 109.47157 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47454 * 275.00331 * 14 13 11 20 20 C 1.53002 * 117.50038 * 128.75004 * 19 14 13 21 21 C 1.53003 * 117.50080 * 60.08867 * 19 14 13 22 22 C 1.50705 * 109.47263 * 93.97617 * 9 7 2 23 23 C 1.38234 * 119.99709 * 53.84884 * 22 9 7 24 24 C 1.38234 * 119.99968 * 179.81248 * 23 22 9 25 25 C 1.38238 * 119.99668 * 0.39318 * 24 23 22 26 26 C 1.38233 * 120.00167 * 359.85925 * 25 24 23 27 27 C 1.38227 * 120.00056 * 234.12010 * 22 9 7 28 28 H 0.96999 * 120.00418 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00231 * 0.02562 * 13 11 9 30 30 H 1.09004 * 109.47239 * 55.00443 * 16 14 13 31 31 H 1.09004 * 109.46995 * 174.99658 * 16 14 13 32 32 H 1.08990 * 109.47315 * 300.00326 * 17 16 14 33 33 H 1.09004 * 109.46916 * 60.00096 * 17 16 14 34 34 H 0.96697 * 113.99727 * 179.97438 * 18 17 16 35 35 H 1.09010 * 115.54980 * 274.41844 * 19 14 13 36 36 H 1.08999 * 117.49760 * 359.97438 * 20 19 14 37 37 H 1.08998 * 117.49962 * 145.02211 * 20 19 14 38 38 H 1.08996 * 117.49830 * 214.97929 * 21 19 14 39 39 H 1.09001 * 117.49336 * 359.97380 * 21 19 14 40 40 H 1.08001 * 119.99986 * 359.97438 * 23 22 9 41 41 H 1.08004 * 119.99890 * 180.23098 * 24 23 22 42 42 H 1.08002 * 119.99400 * 179.83589 * 25 24 23 43 43 H 1.08005 * 119.99953 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00483 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0795 -1.1970 0.1046 9 6 1.2581 -2.4952 -0.1441 10 1 0.2373 -2.3707 0.2175 11 6 1.9499 -3.5637 0.6626 12 8 2.3787 -4.5561 0.1131 13 7 2.0921 -3.4162 1.9947 14 6 2.7642 -4.4552 2.7790 15 1 3.5682 -4.8936 2.1879 16 6 3.3458 -3.8370 4.0519 17 6 4.4431 -2.8383 3.6787 18 8 4.9859 -2.2605 4.8677 19 6 1.7560 -5.5428 3.1548 20 6 2.1334 -6.9931 2.8462 21 6 1.0609 -6.2870 2.0128 22 6 1.2309 -2.9001 -1.5955 23 6 2.4110 -2.9935 -2.3092 24 6 2.3865 -3.3686 -3.6394 25 6 1.1810 -3.6425 -4.2581 26 6 0.0004 -3.5440 -3.5459 27 6 0.0254 -3.1726 -2.2146 28 1 -0.4851 0.8400 -0.0004 29 1 1.7489 -2.6226 2.4342 30 1 2.5564 -3.3218 4.5992 31 1 3.7679 -4.6235 4.6777 32 1 5.2325 -3.3535 3.1315 33 1 4.0210 -2.0519 3.0529 34 1 5.6889 -1.6164 4.7064 35 1 1.1770 -5.3550 4.0592 36 1 3.0998 -7.1723 2.3749 37 1 1.8024 -7.7594 3.5471 38 1 0.0249 -6.5890 2.1659 39 1 1.3217 -6.0012 0.9938 40 1 3.3525 -2.7759 -1.8268 41 1 3.3089 -3.4453 -4.1960 42 1 1.1617 -3.9330 -5.2982 43 1 -0.9414 -3.7576 -4.0294 44 1 -0.8970 -3.0958 -1.6581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362141913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:33 Heat of formation + Delta-G solvation = -52.336704 kcal Electronic energy + Delta-G solvation = -25385.326878 eV Core-core repulsion = 21881.675287 eV Total energy + Delta-G solvation = -3503.651591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.57816 -38.23418 -36.99058 -36.47723 -33.95663 -33.62082 -31.17362 -30.75204 -29.95377 -27.46156 -25.70860 -23.87413 -22.08795 -21.62183 -21.50779 -21.13323 -19.97766 -19.33586 -17.33295 -16.79537 -16.16652 -16.00213 -15.56015 -15.20353 -14.73289 -14.55379 -14.46832 -14.10767 -13.79254 -13.54215 -12.97454 -12.75345 -12.45697 -12.38151 -12.01272 -11.70931 -11.63979 -11.52612 -11.38678 -11.15850 -11.07407 -10.94181 -10.88217 -10.40928 -10.30484 -10.09612 -9.98986 -9.86730 -9.84231 -9.47730 -8.78531 -8.57963 -8.26270 -7.96155 -7.62918 -6.30440 -4.35742 2.35764 2.38799 3.17762 3.24393 3.26110 3.68227 3.80469 4.15025 4.25943 4.39670 4.82009 5.03391 5.07199 5.12260 5.16526 5.29336 5.36257 5.51389 5.60988 5.70619 5.77480 5.82536 5.87300 5.88141 5.89603 6.08087 6.18667 6.21454 6.25193 6.30630 6.44766 6.49215 6.57823 6.74902 6.86263 6.96115 7.16395 7.27014 7.35414 7.43263 7.59211 7.66585 7.74430 7.94185 8.05699 8.40968 8.68063 9.24921 9.31053 10.78083 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.006442 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.116797 B = 4345.544933 C = 6235.381168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.048 3.952 10 H 0.092 0.908 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.722 5.722 14 C 0.178 3.822 15 H 0.084 0.916 16 C -0.120 4.120 17 C 0.072 3.928 18 O -0.579 6.579 19 C -0.166 4.166 20 C -0.177 4.177 21 C -0.179 4.179 22 C -0.011 4.011 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.120 4.120 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.378 0.622 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -6.196 4.241 8.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.109 0.891 11 C 0.323 3.677 12 O -0.446 6.446 13 N -0.374 5.374 14 C 0.073 3.927 15 H 0.102 0.898 16 C -0.158 4.158 17 C -0.005 4.005 18 O -0.384 6.384 19 C -0.186 4.186 20 C -0.214 4.214 21 C -0.216 4.216 22 C -0.012 4.012 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.240 0.760 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.391 -7.153 4.133 8.930 hybrid contribution 0.588 1.751 -0.128 1.851 sum 3.979 -5.402 4.005 7.814 Atomic orbital electron populations 1.69863 1.05998 1.27579 1.47928 1.24947 0.94876 0.99398 0.93701 0.86588 0.79695 0.82538 0.78890 1.19946 1.21081 1.20028 1.20609 0.93310 0.88700 1.52679 0.92143 1.18130 0.99800 0.91813 0.87515 0.89069 1.21545 0.77552 0.86954 0.81638 1.90503 1.51004 1.31977 1.71082 1.46039 1.60663 1.22684 1.07998 1.20277 0.93497 0.87788 0.91147 0.89826 1.21711 0.98004 0.98617 0.97419 1.22232 0.95501 0.96299 0.86508 1.86412 1.57301 1.61822 1.32916 1.22650 1.02769 0.92723 1.00423 1.22895 1.00624 0.94167 1.03739 1.23316 0.96494 1.02880 0.98895 1.20060 0.92037 0.91856 0.97222 1.20813 0.98301 0.97905 0.93220 1.20956 0.97019 1.01856 0.95439 1.20796 0.93059 1.03968 0.98869 1.20902 0.97207 1.01990 0.94884 1.20998 0.97838 1.00319 0.94671 0.92243 0.75990 0.90701 0.90305 0.93877 0.92209 0.77548 0.88239 0.89007 0.89497 0.89884 0.85799 0.87171 0.87653 0.87751 0.87589 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.75 12.78 55.43 0.71 -22.04 16 2 C 0.08 1.88 5.45 -17.82 -0.10 1.79 16 3 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.52 -12.46 7.46 -34.44 -0.26 -12.72 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.05 1.11 2.44 -94.07 -0.23 0.88 16 10 H 0.09 2.25 7.00 -51.93 -0.36 1.89 16 11 C 0.53 11.12 6.38 -10.98 -0.07 11.05 16 12 O -0.57 -12.68 12.45 5.56 0.07 -12.61 16 13 N -0.72 -12.67 4.41 -53.81 -0.24 -12.91 16 14 C 0.18 2.68 2.27 -67.93 -0.15 2.52 16 15 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 16 C -0.12 -1.56 5.10 -26.73 -0.14 -1.70 16 17 C 0.07 0.97 6.93 37.16 0.26 1.23 16 18 O -0.58 -7.48 13.66 -35.23 -0.48 -7.97 16 19 C -0.17 -2.36 5.36 -90.62 -0.49 -2.84 16 20 C -0.18 -2.35 10.18 -26.69 -0.27 -2.62 16 21 C -0.18 -2.80 9.74 -26.69 -0.26 -3.06 16 22 C -0.01 -0.24 4.30 -104.63 -0.45 -0.69 16 23 C -0.08 -1.85 8.31 -39.58 -0.33 -2.18 16 24 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 25 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 26 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.12 -2.58 9.67 -39.59 -0.38 -2.96 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.40 7.04 8.49 -40.82 -0.35 6.69 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.38 3.30 9.12 45.56 0.42 3.71 16 35 H 0.10 1.30 8.11 -51.92 -0.42 0.88 16 36 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.12 2.35 5.02 -51.93 -0.26 2.09 16 40 H 0.11 2.44 7.89 -52.49 -0.41 2.03 16 41 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.11 2.32 7.96 -52.49 -0.42 1.90 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -28.10 365.64 -9.45 -37.55 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -5.94 Total: 18.21 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -4.06 Total: -20.36 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.47 Total: -34.95 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.41 Total: -20.57 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.10 -9.45 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362141913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.790 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds