Wall clock time and date at job start Tue Mar 31 2020 08:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00224 * 2 1 4 4 H 1.48498 * 109.47312 * 266.47556 * 3 2 1 5 5 H 1.48500 * 109.46953 * 26.47402 * 3 2 1 6 6 H 1.48498 * 109.47521 * 146.46969 * 3 2 1 7 7 C 1.37878 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00256 * 351.24662 * 7 2 1 9 9 C 1.50699 * 120.00153 * 171.52638 * 7 2 1 10 10 H 1.09004 * 109.46940 * 355.26554 * 9 7 2 11 11 C 1.50695 * 109.47452 * 235.26539 * 9 7 2 12 12 O 1.21283 * 119.99958 * 256.66743 * 11 9 7 13 13 N 1.34774 * 120.00253 * 76.66176 * 11 9 7 14 14 C 1.46503 * 120.00117 * 185.03021 * 13 11 9 15 15 H 1.08996 * 109.47020 * 342.72583 * 14 13 11 16 16 C 1.52994 * 109.47020 * 222.72205 * 14 13 11 17 17 C 1.52997 * 109.47080 * 65.00068 * 16 14 13 18 18 O 1.42907 * 109.47290 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47081 * 102.72254 * 14 13 11 20 20 C 1.52999 * 117.50237 * 9.13304 * 19 14 13 21 21 C 1.52998 * 117.50101 * 300.47317 * 19 14 13 22 22 C 1.50698 * 109.47126 * 115.26233 * 9 7 2 23 23 C 1.38230 * 120.00254 * 54.75739 * 22 9 7 24 24 C 1.38234 * 120.00107 * 179.80780 * 23 22 9 25 25 C 1.38235 * 120.00004 * 0.40166 * 24 23 22 26 26 C 1.38226 * 120.00188 * 359.85418 * 25 24 23 27 27 C 1.38235 * 119.99970 * 359.95475 * 26 25 24 28 28 H 0.96996 * 119.99744 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00129 * 5.02455 * 13 11 9 30 30 H 1.08997 * 109.47294 * 184.99879 * 16 14 13 31 31 H 1.09008 * 109.47311 * 304.99703 * 16 14 13 32 32 H 1.08996 * 109.47268 * 299.99365 * 17 16 14 33 33 H 1.08995 * 109.47173 * 59.99958 * 17 16 14 34 34 H 0.96694 * 114.00436 * 180.02562 * 18 17 16 35 35 H 1.09000 * 115.54763 * 154.80545 * 19 14 13 36 36 H 1.09000 * 117.49812 * 0.02562 * 20 19 14 37 37 H 1.08995 * 117.50066 * 145.01731 * 20 19 14 38 38 H 1.09001 * 117.50263 * 214.98420 * 21 19 14 39 39 H 1.09004 * 117.49916 * 0.02562 * 21 19 14 40 40 H 1.08004 * 119.99617 * 0.02562 * 23 22 9 41 41 H 1.08000 * 120.00034 * 180.23357 * 24 23 22 42 42 H 1.08005 * 119.99702 * 179.83626 * 25 24 23 43 43 H 1.08001 * 120.00577 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00397 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5713 2.0033 -1.3974 5 1 1.4114 2.6730 0.6241 6 1 3.5074 1.4628 0.7733 7 6 2.0045 -1.1941 -0.0005 8 1 1.4740 -2.1240 0.1414 9 6 3.4992 -1.2012 -0.1928 10 1 3.8439 -0.1876 -0.3981 11 6 3.8523 -2.0964 -1.3525 12 8 4.3074 -3.2019 -1.1486 13 7 3.6623 -1.6685 -2.6164 14 6 3.9009 -2.5767 -3.7409 15 1 4.5028 -3.4210 -3.4046 16 6 4.6441 -1.8303 -4.8504 17 6 6.0339 -1.4287 -4.3526 18 8 6.7279 -0.7309 -5.3888 19 6 2.5619 -3.0867 -4.2775 20 6 1.2888 -2.4326 -3.7370 21 6 1.6594 -3.8550 -3.3100 22 6 4.1642 -1.7141 1.0584 23 6 3.8013 -2.9415 1.5806 24 6 4.4141 -3.4138 2.7261 25 6 5.3841 -2.6550 3.3541 26 6 5.7433 -1.4254 2.8349 27 6 5.1333 -0.9548 1.6872 28 1 -0.4849 0.8400 0.0004 29 1 3.3675 -0.7593 -2.7815 30 1 4.7433 -2.4785 -5.7211 31 1 4.0841 -0.9363 -5.1251 32 1 5.9347 -0.7803 -3.4820 33 1 6.5938 -2.3226 -4.0780 34 1 7.6185 -0.4457 -5.1428 35 1 2.5625 -3.4000 -5.3215 36 1 1.4051 -1.6385 -2.9994 37 1 0.4518 -2.3158 -4.4253 38 1 1.0660 -4.6735 -3.7174 39 1 2.0194 -3.9967 -2.2909 40 1 3.0413 -3.5329 1.0916 41 1 4.1332 -4.3744 3.1320 42 1 5.8610 -3.0229 4.2506 43 1 6.5009 -0.8323 3.3257 44 1 5.4137 0.0062 1.2817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362141921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:40 Heat of formation + Delta-G solvation = -46.803698 kcal Electronic energy + Delta-G solvation = -25638.401227 eV Core-core repulsion = 22134.989565 eV Total energy + Delta-G solvation = -3503.411662 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74449 -38.42536 -37.08971 -36.54398 -33.64977 -33.63998 -31.60748 -30.98073 -30.15329 -27.83543 -25.92831 -23.62483 -22.06143 -21.89107 -21.57431 -21.22894 -19.66594 -19.33346 -17.47729 -17.12015 -16.37644 -16.17657 -15.66888 -15.40718 -14.83849 -14.60850 -14.37941 -14.16592 -13.75238 -13.39816 -13.08985 -12.86358 -12.68371 -12.63955 -12.26957 -12.02297 -11.77770 -11.62414 -11.51022 -11.20652 -11.10152 -11.01458 -10.79070 -10.51627 -10.17840 -10.04266 -9.97663 -9.84266 -9.62513 -9.52890 -9.04287 -8.69368 -8.43582 -8.15566 -7.84352 -6.34758 -4.36193 2.12235 2.19107 3.06398 3.19808 3.21359 3.56179 3.87004 4.06228 4.16090 4.36577 4.61304 4.99986 5.07736 5.10898 5.18356 5.39858 5.42903 5.51884 5.52488 5.56410 5.67268 5.74848 5.75889 5.87156 5.91687 5.99978 6.09193 6.15398 6.18075 6.29982 6.34307 6.38182 6.40373 6.67133 6.71494 6.82902 6.83770 7.12114 7.14793 7.23238 7.26894 7.56071 7.56568 7.76968 8.14275 8.28807 8.69644 9.10240 9.23031 10.76130 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.006202 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.546932 B = 4513.934430 C = 5196.906546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.084 3.916 3 Si 0.862 3.138 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.031 3.969 10 H 0.059 0.941 11 C 0.533 3.467 12 O -0.559 6.559 13 N -0.726 5.726 14 C 0.174 3.826 15 H 0.098 0.902 16 C -0.122 4.122 17 C 0.076 3.924 18 O -0.578 6.578 19 C -0.177 4.177 20 C -0.166 4.166 21 C -0.168 4.168 22 C -0.030 4.030 23 C -0.069 4.069 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.131 4.131 27 C -0.134 4.134 28 H 0.269 0.731 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.377 0.623 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 -1.504 -5.303 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.121 4.121 3 Si 0.689 3.311 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.541 4.541 8 H 0.102 0.898 9 C 0.009 3.991 10 H 0.077 0.923 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.378 5.378 14 C 0.068 3.932 15 H 0.116 0.884 16 C -0.160 4.160 17 C -0.002 4.002 18 O -0.384 6.384 19 C -0.196 4.196 20 C -0.203 4.203 21 C -0.205 4.205 22 C -0.031 4.031 23 C -0.087 4.087 24 C -0.149 4.149 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.152 4.152 28 H 0.079 0.921 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.692 -2.303 -5.465 10.523 hybrid contribution 0.517 1.507 0.305 1.623 sum 9.209 -0.796 -5.160 10.586 Atomic orbital electron populations 1.69872 1.06165 1.27487 1.47582 1.25025 0.94727 0.98589 0.93753 0.87062 0.80900 0.84069 0.79115 1.19724 1.20935 1.18483 1.20491 0.86642 0.95626 1.51330 0.89825 1.18372 0.98363 0.94679 0.87643 0.92311 1.21477 0.73976 0.88231 0.84035 1.90574 1.45483 1.22471 1.85202 1.46027 1.70554 1.15767 1.05443 1.20265 0.94005 0.93320 0.85588 0.88394 1.21766 0.94244 1.01455 0.98517 1.22193 0.92998 0.95342 0.89667 1.86437 1.32424 1.77730 1.41775 1.22706 0.92076 1.06486 0.98331 1.23028 0.96294 0.97569 1.03457 1.22845 1.02590 0.94894 1.00215 1.19978 0.92608 0.93621 0.96864 1.20885 0.98147 0.95415 0.94297 1.21048 0.97703 0.99524 0.96637 1.20869 0.99409 0.95579 1.00189 1.20877 1.00573 0.96483 0.96957 1.20998 0.97604 0.99707 0.96923 0.92086 0.76681 0.90346 0.90772 0.93227 0.93638 0.77659 0.87976 0.86690 0.89891 0.89804 0.88250 0.86304 0.87150 0.87374 0.87313 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.99 13.96 55.43 0.77 -23.22 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.86 18.96 26.91 -169.99 -4.57 14.39 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.56 6.88 56.52 0.39 -5.17 16 7 C -0.50 -12.56 8.29 -34.44 -0.29 -12.85 16 8 H 0.08 2.35 7.79 -52.48 -0.41 1.94 16 9 C 0.03 0.68 2.21 -94.08 -0.21 0.47 16 10 H 0.06 1.24 4.67 -51.93 -0.24 1.00 16 11 C 0.53 10.89 6.54 -10.99 -0.07 10.82 16 12 O -0.56 -12.51 14.32 5.56 0.08 -12.43 16 13 N -0.73 -12.45 2.79 -53.81 -0.15 -12.60 16 14 C 0.17 2.60 2.61 -67.93 -0.18 2.42 16 15 H 0.10 1.62 7.05 -51.93 -0.37 1.25 16 16 C -0.12 -1.55 5.21 -26.74 -0.14 -1.69 16 17 C 0.08 0.95 6.93 37.16 0.26 1.21 16 18 O -0.58 -6.95 13.66 -35.23 -0.48 -7.43 16 19 C -0.18 -2.59 5.70 -90.62 -0.52 -3.11 16 20 C -0.17 -2.76 9.85 -26.70 -0.26 -3.02 16 21 C -0.17 -2.81 10.17 -26.70 -0.27 -3.08 16 22 C -0.03 -0.64 4.49 -104.62 -0.47 -1.11 16 23 C -0.07 -1.47 8.00 -39.59 -0.32 -1.79 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.14 -2.40 10.05 -39.59 -0.40 -2.80 16 26 C -0.13 -2.26 10.05 -39.59 -0.40 -2.66 16 27 C -0.13 -2.62 9.67 -39.58 -0.38 -3.00 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.40 6.62 8.46 -40.82 -0.35 6.28 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 32 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.38 2.85 9.12 45.56 0.42 3.27 16 35 H 0.10 1.29 8.12 -51.93 -0.42 0.87 16 36 H 0.11 2.23 6.75 -51.93 -0.35 1.88 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.97 7.55 -51.93 -0.39 1.58 16 40 H 0.12 2.65 7.56 -52.48 -0.40 2.25 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.97 7.95 -52.49 -0.42 1.56 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -29.22 363.97 -8.86 -38.08 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -5.86 Total: 18.67 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -4.14 Total: -20.95 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.62 Total: -35.82 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.40 Total: -19.86 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.57 Total: 14.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.22 -8.86 -38.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362141921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.721 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds