Wall clock time and date at job start Tue Mar 31 2020 08:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00224 * 2 1 4 4 H 1.48498 * 109.47312 * 266.47556 * 3 2 1 5 5 H 1.48500 * 109.46953 * 26.47402 * 3 2 1 6 6 H 1.48498 * 109.47521 * 146.46969 * 3 2 1 7 7 C 1.37878 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00256 * 351.24662 * 7 2 1 9 9 C 1.50699 * 120.00153 * 171.52638 * 7 2 1 10 10 H 1.09004 * 109.46940 * 355.26554 * 9 7 2 11 11 C 1.50695 * 109.47452 * 235.26539 * 9 7 2 12 12 O 1.21283 * 119.99958 * 256.66743 * 11 9 7 13 13 N 1.34774 * 120.00253 * 76.66176 * 11 9 7 14 14 C 1.46503 * 120.00117 * 185.03021 * 13 11 9 15 15 H 1.08996 * 109.47020 * 342.72583 * 14 13 11 16 16 C 1.52994 * 109.47020 * 222.72205 * 14 13 11 17 17 C 1.52997 * 109.47080 * 65.00068 * 16 14 13 18 18 O 1.42907 * 109.47290 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47081 * 102.72254 * 14 13 11 20 20 C 1.52999 * 117.50237 * 9.13304 * 19 14 13 21 21 C 1.52998 * 117.50101 * 300.47317 * 19 14 13 22 22 C 1.50698 * 109.47126 * 115.26233 * 9 7 2 23 23 C 1.38230 * 120.00254 * 54.75739 * 22 9 7 24 24 C 1.38234 * 120.00107 * 179.80780 * 23 22 9 25 25 C 1.38235 * 120.00004 * 0.40166 * 24 23 22 26 26 C 1.38226 * 120.00188 * 359.85418 * 25 24 23 27 27 C 1.38235 * 119.99970 * 359.95475 * 26 25 24 28 28 H 0.96996 * 119.99744 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00129 * 5.02455 * 13 11 9 30 30 H 1.08997 * 109.47294 * 184.99879 * 16 14 13 31 31 H 1.09008 * 109.47311 * 304.99703 * 16 14 13 32 32 H 1.08996 * 109.47268 * 299.99365 * 17 16 14 33 33 H 1.08995 * 109.47173 * 59.99958 * 17 16 14 34 34 H 0.96694 * 114.00436 * 180.02562 * 18 17 16 35 35 H 1.09000 * 115.54763 * 154.80545 * 19 14 13 36 36 H 1.09000 * 117.49812 * 0.02562 * 20 19 14 37 37 H 1.08995 * 117.50066 * 145.01731 * 20 19 14 38 38 H 1.09001 * 117.50263 * 214.98420 * 21 19 14 39 39 H 1.09004 * 117.49916 * 0.02562 * 21 19 14 40 40 H 1.08004 * 119.99617 * 0.02562 * 23 22 9 41 41 H 1.08000 * 120.00034 * 180.23357 * 24 23 22 42 42 H 1.08005 * 119.99702 * 179.83626 * 25 24 23 43 43 H 1.08001 * 120.00577 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00397 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5713 2.0033 -1.3974 5 1 1.4114 2.6730 0.6241 6 1 3.5074 1.4628 0.7733 7 6 2.0045 -1.1941 -0.0005 8 1 1.4740 -2.1240 0.1414 9 6 3.4992 -1.2012 -0.1928 10 1 3.8439 -0.1876 -0.3981 11 6 3.8523 -2.0964 -1.3525 12 8 4.3074 -3.2019 -1.1486 13 7 3.6623 -1.6685 -2.6164 14 6 3.9009 -2.5767 -3.7409 15 1 4.5028 -3.4210 -3.4046 16 6 4.6441 -1.8303 -4.8504 17 6 6.0339 -1.4287 -4.3526 18 8 6.7279 -0.7309 -5.3888 19 6 2.5619 -3.0867 -4.2775 20 6 1.2888 -2.4326 -3.7370 21 6 1.6594 -3.8550 -3.3100 22 6 4.1642 -1.7141 1.0584 23 6 3.8013 -2.9415 1.5806 24 6 4.4141 -3.4138 2.7261 25 6 5.3841 -2.6550 3.3541 26 6 5.7433 -1.4254 2.8349 27 6 5.1333 -0.9548 1.6872 28 1 -0.4849 0.8400 0.0004 29 1 3.3675 -0.7593 -2.7815 30 1 4.7433 -2.4785 -5.7211 31 1 4.0841 -0.9363 -5.1251 32 1 5.9347 -0.7803 -3.4820 33 1 6.5938 -2.3226 -4.0780 34 1 7.6185 -0.4457 -5.1428 35 1 2.5625 -3.4000 -5.3215 36 1 1.4051 -1.6385 -2.9994 37 1 0.4518 -2.3158 -4.4253 38 1 1.0660 -4.6735 -3.7174 39 1 2.0194 -3.9967 -2.2909 40 1 3.0413 -3.5329 1.0916 41 1 4.1332 -4.3744 3.1320 42 1 5.8610 -3.0229 4.2506 43 1 6.5009 -0.8323 3.3257 44 1 5.4137 0.0062 1.2817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362141921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:39 Heat of formation + Delta-G solvation = -65.291440 kcal Electronic energy + Delta-G solvation = -25639.202916 eV Core-core repulsion = 22134.989565 eV Total energy + Delta-G solvation = -3504.213350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26903 -39.84334 -38.42194 -37.66118 -35.48278 -34.98922 -33.38488 -32.25141 -31.62122 -29.45022 -27.18966 -25.42409 -23.40749 -23.37226 -22.88430 -22.52089 -21.06911 -20.84920 -19.11678 -18.38909 -17.96911 -17.62801 -17.01438 -16.76942 -16.28268 -16.04081 -15.71097 -15.59173 -15.18409 -14.88127 -14.73540 -14.44759 -14.12283 -14.04760 -13.73538 -13.53114 -13.22385 -12.94038 -12.76184 -12.74693 -12.64905 -12.34183 -12.07449 -11.96677 -11.89142 -11.70125 -11.41856 -11.18099 -10.95373 -10.90579 -10.82413 -10.47493 -9.90679 -9.63540 -9.36849 -8.33605 -6.39726 0.64177 0.71122 1.31606 1.39310 1.46727 1.90737 2.29745 2.43928 2.90011 3.01355 3.16424 3.22691 3.91812 4.02219 4.04683 4.08053 4.14340 4.20409 4.22612 4.25870 4.37231 4.41180 4.45713 4.49953 4.56506 4.70421 4.75052 4.82818 4.84236 4.89534 4.99992 5.09256 5.17052 5.21867 5.27921 5.33220 5.39397 5.40634 5.69845 5.72485 5.76324 5.95970 6.21317 6.31681 6.61716 6.71558 6.84695 7.22678 7.50089 8.81156 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.006202 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.546932 B = 4513.934430 C = 5196.906546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.036 3.964 3 Si 0.921 3.079 4 H -0.246 1.246 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.496 4.496 8 H 0.030 0.970 9 C 0.033 3.967 10 H 0.069 0.931 11 C 0.534 3.466 12 O -0.583 6.583 13 N -0.715 5.715 14 C 0.172 3.828 15 H 0.084 0.916 16 C -0.113 4.113 17 C 0.079 3.921 18 O -0.588 6.588 19 C -0.149 4.149 20 C -0.174 4.174 21 C -0.185 4.185 22 C -0.061 4.061 23 C -0.099 4.099 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.147 4.147 28 H 0.270 0.730 29 H 0.403 0.597 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -0.308 -5.888 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.165 4.165 3 Si 0.743 3.257 4 H -0.170 1.170 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.012 3.988 10 H 0.087 0.913 11 C 0.323 3.677 12 O -0.463 6.463 13 N -0.366 5.366 14 C 0.068 3.932 15 H 0.102 0.898 16 C -0.151 4.151 17 C 0.001 3.999 18 O -0.396 6.396 19 C -0.168 4.168 20 C -0.211 4.211 21 C -0.222 4.222 22 C -0.061 4.061 23 C -0.117 4.117 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.238 0.762 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.547 -1.104 -6.079 13.096 hybrid contribution -0.341 1.008 0.548 1.196 sum 11.206 -0.096 -5.532 12.498 Atomic orbital electron populations 1.70020 1.08082 1.28394 1.49780 1.25774 0.95319 1.02125 0.93260 0.86113 0.79854 0.79051 0.80637 1.17041 1.21550 1.16895 1.20349 0.88490 0.93611 1.50861 0.95150 1.18295 0.96056 0.95574 0.88914 0.91267 1.21193 0.74044 0.87591 0.84850 1.90551 1.46870 1.23225 1.85701 1.45939 1.69323 1.16223 1.05107 1.20418 0.94413 0.92876 0.85522 0.89828 1.21673 0.94076 1.01572 0.97748 1.22078 0.93028 0.95304 0.89508 1.86385 1.33945 1.77647 1.41602 1.22838 0.90740 1.03864 0.99362 1.22930 0.98450 0.96272 1.03460 1.22780 1.04526 0.95918 0.98950 1.20049 0.94451 0.94492 0.97156 1.20803 0.98887 0.95899 0.96142 1.21341 0.97749 1.00690 0.95615 1.21340 0.98050 0.95009 1.00835 1.21352 1.00344 0.96739 0.95772 1.21255 0.97345 1.00105 0.97825 0.92101 0.76219 0.88419 0.90397 0.94131 0.93553 0.75426 0.84342 0.90029 0.87961 0.87655 0.92455 0.89663 0.85093 0.83286 0.83329 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.35 13.96 21.45 0.30 -53.05 16 2 C 0.04 1.89 5.47 84.65 0.46 2.36 16 3 Si 0.92 39.05 26.91 68.60 1.85 40.89 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.25 -9.74 6.88 99.48 0.68 -9.06 16 7 C -0.50 -26.38 8.29 25.60 0.21 -26.17 16 8 H 0.03 1.89 7.79 -2.91 -0.02 1.87 16 9 C 0.03 1.50 2.21 -13.03 -0.03 1.47 16 10 H 0.07 2.90 4.67 -2.38 -0.01 2.89 16 11 C 0.53 22.80 6.54 87.66 0.57 23.38 16 12 O -0.58 -27.53 14.32 -3.04 -0.04 -27.58 16 13 N -0.72 -25.00 2.79 -442.55 -1.24 -26.24 16 14 C 0.17 5.07 2.61 44.99 0.12 5.19 16 15 H 0.08 2.77 7.05 -2.39 -0.02 2.76 16 16 C -0.11 -2.62 5.21 30.59 0.16 -2.46 16 17 C 0.08 1.83 6.93 71.98 0.50 2.33 16 18 O -0.59 -12.55 13.66 -148.98 -2.04 -14.58 16 19 C -0.15 -4.23 5.70 -10.79 -0.06 -4.29 16 20 C -0.17 -5.87 9.85 30.62 0.30 -5.57 16 21 C -0.18 -6.39 10.17 30.62 0.31 -6.08 16 22 C -0.06 -2.67 4.49 -19.87 -0.09 -2.76 16 23 C -0.10 -4.40 8.00 22.27 0.18 -4.23 16 24 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 25 C -0.13 -4.13 10.05 22.27 0.22 -3.90 16 26 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 27 C -0.15 -5.52 9.67 22.27 0.22 -5.30 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.40 13.44 8.46 -92.71 -0.78 12.65 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.04 1.01 7.75 -2.39 -0.02 0.99 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.40 4.95 9.12 -74.06 -0.68 4.27 16 35 H 0.14 3.02 8.12 -2.39 -0.02 3.00 16 36 H 0.08 3.33 6.75 -2.39 -0.02 3.32 16 37 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.06 2.48 7.55 -2.39 -0.02 2.46 16 40 H 0.09 4.24 7.56 -2.91 -0.02 4.21 16 41 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.12 4.15 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -68.39 363.97 1.89 -66.50 By element: Atomic # 1 Polarization: 48.93 SS G_CDS: -0.47 Total: 48.46 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 3.52 Total: -34.41 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -0.94 Total: -79.28 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -2.08 Total: -42.16 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.85 Total: 40.89 kcal Total: -68.39 1.89 -66.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362141921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.210 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds