Wall clock time and date at job start Tue Mar 31 2020 08:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47319 * 271.08870 * 3 2 1 5 5 H 1.48501 * 109.46890 * 31.08623 * 3 2 1 6 6 H 1.48501 * 109.47546 * 151.08503 * 3 2 1 7 7 C 1.37879 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 3.71166 * 7 2 1 9 9 C 1.50698 * 120.00256 * 183.71378 * 7 2 1 10 10 H 1.09002 * 109.46834 * 33.58477 * 9 7 2 11 11 C 1.50700 * 109.47268 * 153.58157 * 9 7 2 12 12 O 1.21284 * 120.00005 * 119.99925 * 11 9 7 13 13 N 1.34779 * 120.00198 * 300.00116 * 11 9 7 14 14 C 1.46497 * 120.00153 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47494 * 184.53721 * 14 13 11 16 16 C 1.53002 * 112.84917 * 294.62362 * 15 14 13 17 17 O 1.42900 * 109.47169 * 295.00655 * 16 15 14 18 18 C 1.53772 * 113.61942 * 163.42300 * 15 14 13 19 19 C 1.53953 * 87.02254 * 220.05210 * 18 15 14 20 20 C 1.53778 * 87.11038 * 25.36168 * 19 18 15 21 21 C 1.50695 * 109.47097 * 273.58335 * 9 7 2 22 22 C 1.38233 * 120.00352 * 306.73634 * 21 9 7 23 23 C 1.38235 * 120.00220 * 179.78983 * 22 21 9 24 24 C 1.38234 * 119.99989 * 0.43671 * 23 22 21 25 25 C 1.38233 * 119.99928 * 359.81427 * 24 23 22 26 26 C 1.38238 * 119.99719 * 127.00713 * 21 9 7 27 27 H 0.96998 * 120.00368 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99498 * 0.02562 * 13 11 9 29 29 H 1.09008 * 109.46426 * 64.54159 * 14 13 11 30 30 H 1.08999 * 109.47389 * 304.54553 * 14 13 11 31 31 H 1.09006 * 109.47521 * 55.00108 * 16 15 14 32 32 H 1.08998 * 109.47099 * 175.00488 * 16 15 14 33 33 H 0.96695 * 114.00287 * 180.02562 * 17 16 15 34 34 H 1.09009 * 113.61303 * 334.57211 * 18 15 14 35 35 H 1.08997 * 113.61428 * 105.46900 * 18 15 14 36 36 H 1.09003 * 113.53466 * 270.81077 * 19 18 15 37 37 H 1.08996 * 113.74059 * 139.94508 * 19 18 15 38 38 H 1.08997 * 113.61406 * 220.09248 * 20 19 18 39 39 H 1.09000 * 113.69254 * 89.19809 * 20 19 18 40 40 H 1.08003 * 119.99224 * 359.97438 * 22 21 9 41 41 H 1.07998 * 119.99819 * 180.26952 * 23 22 21 42 42 H 1.07993 * 120.00015 * 179.83683 * 24 23 22 43 43 H 1.08001 * 120.00177 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00236 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4737 2.0597 -1.3998 5 1 1.4583 2.6459 0.7229 6 1 3.5580 1.4337 0.6769 7 6 2.0046 -1.1940 -0.0005 8 1 1.4663 -2.1284 -0.0615 9 6 3.5092 -1.1955 0.0840 10 1 3.8392 -0.3588 0.6998 11 6 3.9764 -2.4884 0.7012 12 8 4.7091 -3.2277 0.0786 13 7 3.5802 -2.8233 1.9451 14 6 4.0340 -4.0805 2.5449 15 6 3.3556 -4.2719 3.9029 16 6 3.7730 -3.2169 4.9294 17 8 5.1645 -3.3606 5.2213 18 6 3.4349 -5.7130 4.4335 19 6 1.9832 -5.5311 4.9128 20 6 1.8337 -4.4714 3.8085 21 6 4.0902 -1.0606 -1.2999 22 6 3.7002 -1.9304 -2.3010 23 6 4.2299 -1.8040 -3.5716 24 6 5.1564 -0.8134 -3.8388 25 6 5.5502 0.0531 -2.8364 26 6 5.0173 -0.0706 -1.5668 27 1 -0.4850 0.8400 0.0004 28 1 2.9939 -2.2323 2.4429 29 1 5.1152 -4.0490 2.6801 30 1 3.7739 -4.9110 1.8885 31 1 3.5877 -2.2221 4.5241 32 1 3.1943 -3.3504 5.8434 33 1 5.4988 -2.7230 5.8668 34 1 3.5452 -6.4617 3.6490 35 1 4.1510 -5.8405 5.2453 36 1 1.9055 -5.1248 5.9213 37 1 1.3577 -6.4107 4.7614 38 1 1.2590 -3.5979 4.1165 39 1 1.5052 -4.8786 2.8523 40 1 2.9794 -2.7069 -2.0912 41 1 3.9220 -2.4808 -4.3548 42 1 5.5721 -0.7163 -4.8307 43 1 6.2743 0.8268 -3.0450 44 1 5.3249 0.6065 -0.7837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362342406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:03 Heat of formation + Delta-G solvation = -49.707933 kcal Electronic energy + Delta-G solvation = -25226.289213 eV Core-core repulsion = 21722.751614 eV Total energy + Delta-G solvation = -3503.537599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03637 -39.03100 -37.69357 -36.07084 -33.69967 -33.58331 -31.47483 -30.09739 -28.93071 -27.56810 -26.03933 -25.46783 -23.53927 -22.22412 -21.79917 -20.82901 -19.30250 -18.29658 -17.39200 -17.10261 -16.57123 -16.02565 -15.63194 -15.13651 -14.95526 -14.59013 -14.31556 -13.98936 -13.76120 -13.62612 -13.20168 -12.83995 -12.75792 -12.64060 -12.45301 -12.27780 -12.01160 -11.87552 -11.54197 -11.38541 -11.10110 -10.97177 -10.59261 -10.44791 -10.35565 -10.23610 -10.15188 -9.88609 -9.83934 -9.50519 -8.90111 -8.68188 -8.30661 -8.09661 -7.77514 -6.29060 -4.33174 2.18609 2.25160 3.17811 3.24279 3.30020 3.65497 3.85289 4.18598 4.24321 4.56070 4.62734 4.69577 4.80732 4.98786 5.03276 5.15636 5.33256 5.49591 5.58166 5.58428 5.63867 5.74997 5.78938 5.83118 5.95190 5.96109 5.99145 6.01941 6.08982 6.29394 6.33846 6.36386 6.38691 6.44863 6.53028 6.78438 6.89418 7.18117 7.20705 7.29152 7.31888 7.56746 7.63837 7.83852 8.21668 8.35467 8.70866 9.17996 9.29620 10.81656 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004796 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.231956 B = 5836.687163 C = 6615.168234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.086 3.914 3 Si 0.865 3.135 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.070 0.930 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.725 5.725 14 C 0.142 3.858 15 C -0.095 4.095 16 C 0.099 3.901 17 O -0.568 6.568 18 C -0.120 4.120 19 C -0.144 4.144 20 C -0.124 4.124 21 C -0.029 4.029 22 C -0.071 4.071 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.138 4.138 27 H 0.268 0.732 28 H 0.403 0.597 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -4.469 8.544 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.119 4.119 3 Si 0.692 3.308 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.547 4.547 8 H 0.100 0.900 9 C -0.003 4.003 10 H 0.088 0.912 11 C 0.325 3.675 12 O -0.441 6.441 13 N -0.377 5.377 14 C 0.018 3.982 15 C -0.095 4.095 16 C 0.022 3.978 17 O -0.372 6.372 18 C -0.158 4.158 19 C -0.181 4.181 20 C -0.162 4.162 21 C -0.030 4.030 22 C -0.089 4.089 23 C -0.148 4.148 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.157 4.157 27 H 0.078 0.922 28 H 0.237 0.763 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.099 -5.374 7.665 11.173 hybrid contribution 0.000 1.800 0.527 1.876 sum 6.099 -3.574 8.191 10.820 Atomic orbital electron populations 1.69863 1.06154 1.27379 1.48621 1.24937 0.94665 0.98755 0.93504 0.87024 0.80330 0.83915 0.79547 1.19352 1.21272 1.18478 1.20534 0.86155 0.95236 1.52809 0.89987 1.18590 0.98307 0.92882 0.90486 0.91206 1.20966 0.78013 0.88317 0.80186 1.90595 1.37619 1.53965 1.61933 1.45829 1.52233 1.22500 1.17152 1.21084 0.98567 0.87365 0.91231 1.22065 0.96677 0.95961 0.94821 1.21885 0.81968 0.97514 0.96474 1.86474 1.24486 1.60349 1.65939 1.22857 0.96871 0.95223 1.00847 1.22898 0.97055 0.99523 0.98629 1.22929 0.93970 0.99417 0.99854 1.20106 0.92405 0.93426 0.97023 1.20856 0.97958 0.98206 0.91899 1.21037 0.98188 0.98677 0.96894 1.20858 0.99698 0.97143 0.98427 1.20882 1.00703 0.99564 0.93617 1.21010 0.98221 0.99702 0.96725 0.92220 0.76264 0.91812 0.91967 0.93004 0.93438 0.77667 0.89879 0.90967 0.90468 0.91386 0.90910 0.88999 0.86430 0.87125 0.87342 0.87303 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.96 55.43 0.77 -24.07 16 2 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 20.13 26.33 -169.99 -4.48 15.66 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.63 5.94 56.52 0.34 -5.30 16 7 C -0.51 -13.02 8.00 -34.44 -0.28 -13.29 16 8 H 0.08 2.30 8.05 -52.48 -0.42 1.88 16 9 C 0.02 0.43 1.88 -94.08 -0.18 0.26 16 10 H 0.07 1.57 5.26 -51.93 -0.27 1.30 16 11 C 0.54 11.82 7.04 -10.98 -0.08 11.75 16 12 O -0.56 -13.70 15.45 5.55 0.09 -13.62 16 13 N -0.73 -13.30 5.18 -60.29 -0.31 -13.62 16 14 C 0.14 2.28 4.93 -4.04 -0.02 2.26 16 15 C -0.09 -1.20 0.63 -153.70 -0.10 -1.29 16 16 C 0.10 1.12 6.18 37.16 0.23 1.35 16 17 O -0.57 -6.53 13.18 -35.23 -0.46 -7.00 16 18 C -0.12 -1.34 7.17 -25.83 -0.19 -1.52 16 19 C -0.14 -1.45 7.74 -25.83 -0.20 -1.65 16 20 C -0.12 -1.51 7.07 -25.92 -0.18 -1.69 16 21 C -0.03 -0.65 3.65 -104.63 -0.38 -1.04 16 22 C -0.07 -1.59 8.34 -39.58 -0.33 -1.92 16 23 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 24 C -0.14 -2.59 10.05 -39.58 -0.40 -2.98 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 26 C -0.14 -2.90 8.77 -39.58 -0.35 -3.25 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.40 7.00 7.55 -40.82 -0.31 6.69 16 29 H 0.06 1.11 7.92 -51.92 -0.41 0.70 16 30 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 31 H 0.05 0.60 7.30 -51.93 -0.38 0.23 16 32 H 0.05 0.46 7.31 -51.93 -0.38 0.08 16 33 H 0.38 2.64 9.12 45.56 0.42 3.06 16 34 H 0.08 0.92 8.05 -51.92 -0.42 0.50 16 35 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 36 H 0.08 0.70 7.61 -51.93 -0.40 0.31 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.12 2.72 7.87 -52.48 -0.41 2.30 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.11 7.96 -52.49 -0.42 1.69 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -31.21 358.17 -8.30 -39.51 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -5.97 Total: 14.31 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.33 Total: -16.58 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.46 Total: -37.68 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.38 Total: -20.62 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.48 Total: 15.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.21 -8.30 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362342406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.201 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds