Wall clock time and date at job start Tue Mar 31 2020 08:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00115 * 2 1 4 4 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47038 * 120.00155 * 3 2 1 6 6 H 1.48498 * 109.47233 * 240.00219 * 3 2 1 7 7 C 1.37881 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99845 * 173.46327 * 7 2 1 9 9 C 1.50693 * 119.99815 * 353.45428 * 7 2 1 10 10 H 1.09002 * 109.47418 * 326.78117 * 9 7 2 11 11 C 1.50704 * 109.47439 * 206.77375 * 9 7 2 12 12 O 1.21279 * 120.00302 * 240.00633 * 11 9 7 13 13 N 1.34779 * 119.99436 * 60.00382 * 11 9 7 14 14 C 1.46497 * 119.99719 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47364 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 O 1.42902 * 112.84660 * 53.80389 * 16 15 14 18 18 C 1.53775 * 113.61677 * 282.49630 * 16 15 14 19 19 C 1.53778 * 87.08467 * 220.01530 * 18 16 15 20 20 C 1.53780 * 113.61607 * 184.99639 * 16 15 14 21 21 C 1.50706 * 109.47160 * 86.77601 * 9 7 2 22 22 C 1.38245 * 119.99323 * 52.96770 * 21 9 7 23 23 C 1.38237 * 119.99094 * 179.78969 * 22 21 9 24 24 C 1.38235 * 120.00776 * 0.44132 * 23 22 21 25 25 C 1.38233 * 119.99369 * 359.81414 * 24 23 22 26 26 C 1.38230 * 120.00270 * 233.24149 * 21 9 7 27 27 H 0.97003 * 120.00089 * 174.55174 * 1 2 3 28 28 H 0.96998 * 120.00461 * 0.02562 * 13 11 9 29 29 H 1.08999 * 109.47106 * 300.00284 * 14 13 11 30 30 H 1.09002 * 109.47508 * 60.00073 * 14 13 11 31 31 H 1.08998 * 109.46961 * 299.99804 * 15 14 13 32 32 H 1.09000 * 109.47148 * 59.99906 * 15 14 13 33 33 H 0.96700 * 114.00212 * 309.66531 * 17 16 15 34 34 H 1.09004 * 113.61367 * 334.57188 * 18 16 15 35 35 H 1.09006 * 113.61456 * 105.46866 * 18 16 15 36 36 H 1.09001 * 113.61759 * 270.88495 * 19 18 16 37 37 H 1.08995 * 113.61268 * 139.97567 * 19 18 16 38 38 H 1.09002 * 113.61745 * 254.53257 * 20 16 15 39 39 H 1.08999 * 113.60921 * 25.43769 * 20 16 15 40 40 H 1.07993 * 119.99971 * 0.02562 * 22 21 9 41 41 H 1.08007 * 119.99517 * 180.27674 * 23 22 21 42 42 H 1.07995 * 120.00434 * 179.83260 * 24 23 22 43 43 H 1.08007 * 119.99900 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.99906 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1970 -0.1070 9 6 1.2584 -2.4949 0.1477 10 1 0.3920 -2.3455 0.7919 11 6 2.1678 -3.5287 0.7604 12 8 2.4195 -4.5496 0.1559 13 7 2.7014 -3.3187 1.9801 14 6 3.5858 -4.3234 2.5755 15 6 4.0509 -3.8422 3.9514 16 6 4.9741 -4.8917 4.5735 17 8 6.0636 -5.2481 3.7202 18 6 4.2260 -6.1013 5.1582 19 6 5.2252 -6.0554 6.3262 20 6 5.4020 -4.5602 6.0129 21 6 0.8006 -2.9687 -1.2078 22 6 1.7104 -3.0876 -2.2419 23 6 1.2913 -3.5264 -3.4839 24 6 -0.0390 -3.8375 -3.6946 25 6 -0.9496 -3.7135 -2.6619 26 6 -0.5298 -3.2789 -1.4185 27 1 -0.4850 -0.8363 -0.0798 28 1 2.4998 -2.5024 2.4637 29 1 3.0465 -5.2645 2.6824 30 1 4.4523 -4.4724 1.9312 31 1 4.5904 -2.9012 3.8440 32 1 3.1847 -3.6929 4.5960 33 1 5.7983 -5.4803 2.8198 34 1 3.2000 -5.8797 5.4522 35 1 4.3077 -7.0015 4.5489 36 1 6.1247 -6.6467 6.1548 37 1 4.7701 -6.2470 7.2979 38 1 6.4331 -4.2161 6.0937 39 1 4.6975 -3.9173 6.5406 40 1 2.7491 -2.8414 -2.0782 41 1 2.0029 -3.6236 -4.2907 42 1 -0.3669 -4.1777 -4.6657 43 1 -1.9889 -3.9569 -2.8263 44 1 -1.2412 -3.1822 -0.6117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362433910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:26 Heat of formation + Delta-G solvation = -58.887365 kcal Electronic energy + Delta-G solvation = -24624.932396 eV Core-core repulsion = 21120.996747 eV Total energy + Delta-G solvation = -3503.935649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00954 -39.20754 -37.82677 -34.91078 -34.42673 -33.99001 -30.95141 -30.43294 -30.04933 -27.31458 -26.01006 -24.78934 -23.60875 -21.84277 -21.64381 -20.87505 -19.83833 -19.53602 -17.42168 -16.66569 -16.28498 -15.82290 -15.76609 -15.20758 -15.10005 -14.71288 -14.36337 -13.95977 -13.84852 -13.67337 -13.39921 -12.93543 -12.62042 -12.58608 -12.38561 -12.20561 -11.99856 -11.81039 -11.60549 -11.27973 -11.24570 -11.03743 -10.97979 -10.87152 -10.35232 -10.29599 -10.22883 -10.16028 -9.81007 -9.02072 -8.85580 -8.65347 -8.47790 -8.05125 -7.67928 -6.58110 -4.35780 2.25882 2.30746 3.32703 3.34893 3.53295 3.56687 3.82215 3.89007 4.32952 4.37662 4.46566 4.63927 4.70988 4.80571 5.09278 5.14006 5.18014 5.32651 5.49192 5.53545 5.59478 5.63990 5.67885 5.71365 5.77764 5.80965 5.89440 5.98374 6.06255 6.13275 6.17888 6.22846 6.37732 6.44329 6.59731 6.85082 6.94856 7.06374 7.26655 7.33122 7.50739 7.55920 7.80042 7.92615 8.16724 8.23778 8.58161 9.08744 9.36693 10.79434 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.004017 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.704043 B = 6969.371217 C = 8358.690395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 1.067 2.933 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.043 3.957 10 H 0.064 0.936 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.729 5.729 14 C 0.120 3.880 15 C -0.150 4.150 16 C 0.113 3.887 17 O -0.545 6.545 18 C -0.167 4.167 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.020 4.020 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.128 4.128 27 H 0.275 0.725 28 H 0.406 0.594 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.382 0.618 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -7.663 8.143 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.175 4.175 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.082 0.918 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.382 5.382 14 C -0.005 4.005 15 C -0.188 4.188 16 C 0.071 3.929 17 O -0.352 6.352 18 C -0.205 4.205 19 C -0.173 4.173 20 C -0.164 4.164 21 C -0.021 4.021 22 C -0.097 4.097 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.086 0.914 28 H 0.241 0.759 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.668 -6.633 8.322 12.057 hybrid contribution -0.255 -1.322 -0.496 1.434 sum 5.413 -7.955 7.826 12.403 Atomic orbital electron populations 1.70774 1.06918 1.31406 1.43622 1.25855 0.96327 1.02534 0.92769 0.83567 0.75001 0.75217 0.76810 1.20620 1.21189 1.21235 1.21560 0.94646 0.89533 1.57367 0.92438 1.18166 0.95594 0.93478 0.90557 0.91801 1.21303 0.79914 0.86824 0.79730 1.90587 1.62458 1.29475 1.61804 1.45874 1.49895 1.22660 1.19735 1.21112 0.94045 0.92539 0.92783 1.22344 0.99943 0.99860 0.96656 1.22109 0.86900 0.93488 0.90360 1.86440 1.33024 1.89796 1.25915 1.23644 0.99073 0.99274 0.98469 1.22751 0.99696 0.96609 0.98232 1.23028 1.02674 0.97234 0.93481 1.20124 0.92538 0.92470 0.96972 1.20797 0.99505 0.97262 0.92092 1.20992 0.95645 1.01304 0.97124 1.20825 0.93795 1.03470 0.98309 1.20888 0.98555 1.01542 0.93694 1.20970 0.95886 1.00861 0.96926 0.91391 0.75942 0.92178 0.92391 0.90185 0.90061 0.76906 0.89306 0.90952 0.89945 0.91475 0.90621 0.88812 0.86997 0.87387 0.87489 0.87375 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.56 55.43 0.75 -23.83 16 2 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 3 Si 1.07 23.19 29.91 -169.99 -5.08 18.10 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.59 -14.86 7.42 -34.44 -0.26 -15.11 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.04 1.02 1.92 -94.07 -0.18 0.84 16 10 H 0.06 1.55 6.82 -51.93 -0.35 1.19 16 11 C 0.53 11.67 7.04 -10.98 -0.08 11.59 16 12 O -0.56 -13.57 15.46 5.56 0.09 -13.49 16 13 N -0.73 -12.91 5.46 -60.29 -0.33 -13.23 16 14 C 0.12 1.71 5.24 -4.04 -0.02 1.69 16 15 C -0.15 -1.69 4.97 -26.73 -0.13 -1.83 16 16 C 0.11 1.20 1.38 -89.81 -0.12 1.08 16 17 O -0.54 -6.47 13.39 -35.23 -0.47 -6.94 16 18 C -0.17 -1.60 7.32 -25.92 -0.19 -1.79 16 19 C -0.14 -1.21 8.02 -25.92 -0.21 -1.41 16 20 C -0.13 -1.19 7.47 -25.92 -0.19 -1.39 16 21 C -0.02 -0.47 4.03 -104.62 -0.42 -0.89 16 22 C -0.08 -1.79 8.36 -39.58 -0.33 -2.12 16 23 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 24 C -0.15 -2.73 10.05 -39.58 -0.40 -3.12 16 25 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 26 C -0.13 -2.78 9.25 -39.58 -0.37 -3.15 16 27 H 0.27 7.50 6.30 -40.82 -0.26 7.24 16 28 H 0.41 6.82 8.36 -40.82 -0.34 6.48 16 29 H 0.06 0.87 8.05 -51.93 -0.42 0.46 16 30 H 0.06 0.85 6.75 -51.93 -0.35 0.50 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 33 H 0.38 3.84 7.18 45.56 0.33 4.16 16 34 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.11 2.61 7.86 -52.49 -0.41 2.20 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.11 2.22 7.96 -52.49 -0.42 1.80 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -30.50 363.27 -9.43 -39.93 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.07 Total: 14.79 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.79 Total: -20.81 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.42 Total: -37.06 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.39 Total: -20.43 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.08 Total: 18.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.50 -9.43 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362433910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.954 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds