Wall clock time and date at job start Tue Mar 31 2020 08:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00115 * 2 1 4 4 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47038 * 120.00155 * 3 2 1 6 6 H 1.48498 * 109.47233 * 240.00219 * 3 2 1 7 7 C 1.37881 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99845 * 173.46327 * 7 2 1 9 9 C 1.50693 * 119.99815 * 353.45428 * 7 2 1 10 10 H 1.09002 * 109.47418 * 326.78117 * 9 7 2 11 11 C 1.50704 * 109.47439 * 206.77375 * 9 7 2 12 12 O 1.21279 * 120.00302 * 240.00633 * 11 9 7 13 13 N 1.34779 * 119.99436 * 60.00382 * 11 9 7 14 14 C 1.46497 * 119.99719 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47364 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 O 1.42902 * 112.84660 * 53.80389 * 16 15 14 18 18 C 1.53775 * 113.61677 * 282.49630 * 16 15 14 19 19 C 1.53778 * 87.08467 * 220.01530 * 18 16 15 20 20 C 1.53780 * 113.61607 * 184.99639 * 16 15 14 21 21 C 1.50706 * 109.47160 * 86.77601 * 9 7 2 22 22 C 1.38245 * 119.99323 * 52.96770 * 21 9 7 23 23 C 1.38237 * 119.99094 * 179.78969 * 22 21 9 24 24 C 1.38235 * 120.00776 * 0.44132 * 23 22 21 25 25 C 1.38233 * 119.99369 * 359.81414 * 24 23 22 26 26 C 1.38230 * 120.00270 * 233.24149 * 21 9 7 27 27 H 0.97003 * 120.00089 * 174.55174 * 1 2 3 28 28 H 0.96998 * 120.00461 * 0.02562 * 13 11 9 29 29 H 1.08999 * 109.47106 * 300.00284 * 14 13 11 30 30 H 1.09002 * 109.47508 * 60.00073 * 14 13 11 31 31 H 1.08998 * 109.46961 * 299.99804 * 15 14 13 32 32 H 1.09000 * 109.47148 * 59.99906 * 15 14 13 33 33 H 0.96700 * 114.00212 * 309.66531 * 17 16 15 34 34 H 1.09004 * 113.61367 * 334.57188 * 18 16 15 35 35 H 1.09006 * 113.61456 * 105.46866 * 18 16 15 36 36 H 1.09001 * 113.61759 * 270.88495 * 19 18 16 37 37 H 1.08995 * 113.61268 * 139.97567 * 19 18 16 38 38 H 1.09002 * 113.61745 * 254.53257 * 20 16 15 39 39 H 1.08999 * 113.60921 * 25.43769 * 20 16 15 40 40 H 1.07993 * 119.99971 * 0.02562 * 22 21 9 41 41 H 1.08007 * 119.99517 * 180.27674 * 23 22 21 42 42 H 1.07995 * 120.00434 * 179.83260 * 24 23 22 43 43 H 1.08007 * 119.99900 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.99906 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1970 -0.1070 9 6 1.2584 -2.4949 0.1477 10 1 0.3920 -2.3455 0.7919 11 6 2.1678 -3.5287 0.7604 12 8 2.4195 -4.5496 0.1559 13 7 2.7014 -3.3187 1.9801 14 6 3.5858 -4.3234 2.5755 15 6 4.0509 -3.8422 3.9514 16 6 4.9741 -4.8917 4.5735 17 8 6.0636 -5.2481 3.7202 18 6 4.2260 -6.1013 5.1582 19 6 5.2252 -6.0554 6.3262 20 6 5.4020 -4.5602 6.0129 21 6 0.8006 -2.9687 -1.2078 22 6 1.7104 -3.0876 -2.2419 23 6 1.2913 -3.5264 -3.4839 24 6 -0.0390 -3.8375 -3.6946 25 6 -0.9496 -3.7135 -2.6619 26 6 -0.5298 -3.2789 -1.4185 27 1 -0.4850 -0.8363 -0.0798 28 1 2.4998 -2.5024 2.4637 29 1 3.0465 -5.2645 2.6824 30 1 4.4523 -4.4724 1.9312 31 1 4.5904 -2.9012 3.8440 32 1 3.1847 -3.6929 4.5960 33 1 5.7983 -5.4803 2.8198 34 1 3.2000 -5.8797 5.4522 35 1 4.3077 -7.0015 4.5489 36 1 6.1247 -6.6467 6.1548 37 1 4.7701 -6.2470 7.2979 38 1 6.4331 -4.2161 6.0937 39 1 4.6975 -3.9173 6.5406 40 1 2.7491 -2.8414 -2.0782 41 1 2.0029 -3.6236 -4.2907 42 1 -0.3669 -4.1777 -4.6657 43 1 -1.9889 -3.9569 -2.8263 44 1 -1.2412 -3.1822 -0.6117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362433910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:25 Heat of formation + Delta-G solvation = -77.978321 kcal Electronic energy + Delta-G solvation = -24625.760242 eV Core-core repulsion = 21120.996747 eV Total energy + Delta-G solvation = -3504.763495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14601 -40.60900 -39.41662 -36.08004 -35.87004 -35.54745 -32.72408 -31.68602 -31.65060 -28.96304 -26.80941 -26.07275 -25.29104 -23.29333 -22.89394 -22.37808 -21.23847 -20.61340 -19.24343 -17.83111 -17.80151 -17.35138 -16.91574 -16.56790 -16.09529 -15.94038 -15.85507 -15.63331 -15.37469 -14.99180 -14.70396 -14.39719 -14.17399 -14.03306 -13.83405 -13.40205 -13.25286 -13.17623 -12.85223 -12.81339 -12.59120 -12.26698 -12.05662 -11.97050 -11.92995 -11.80902 -11.76880 -11.17170 -10.90820 -10.73002 -10.61604 -10.49409 -10.00146 -9.67121 -9.35299 -8.62071 -6.39580 0.63853 0.69589 1.56807 1.62178 1.81450 1.82619 2.39383 2.57303 3.07256 3.09025 3.19766 3.48764 3.63505 3.88649 3.89047 4.07765 4.11126 4.15481 4.20366 4.29322 4.36622 4.37925 4.45785 4.61644 4.65543 4.78420 4.81854 4.82466 4.88363 4.90111 5.00062 5.03315 5.12366 5.24649 5.30766 5.32763 5.42894 5.56664 5.67901 5.71396 5.73391 6.04231 6.14256 6.29864 6.52774 6.65832 6.67491 7.38239 7.41409 8.75810 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.004017 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.704043 B = 6969.371217 C = 8358.690395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 1.107 2.893 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.042 3.958 10 H 0.048 0.952 11 C 0.530 3.470 12 O -0.590 6.590 13 N -0.717 5.717 14 C 0.120 3.880 15 C -0.138 4.138 16 C 0.105 3.895 17 O -0.559 6.559 18 C -0.166 4.166 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.047 4.047 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.266 0.734 28 H 0.410 0.590 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.386 0.614 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -7.934 8.202 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.930 3.070 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.207 1.207 7 C -0.626 4.626 8 H 0.065 0.935 9 C 0.021 3.979 10 H 0.066 0.934 11 C 0.319 3.681 12 O -0.472 6.472 13 N -0.368 5.368 14 C -0.003 4.003 15 C -0.176 4.176 16 C 0.063 3.937 17 O -0.367 6.367 18 C -0.204 4.204 19 C -0.168 4.168 20 C -0.162 4.162 21 C -0.048 4.048 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.145 4.145 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.236 0.764 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.724 -6.915 8.420 12.308 hybrid contribution -0.273 -1.329 -0.556 1.466 sum 5.450 -8.244 7.864 12.630 Atomic orbital electron populations 1.70864 1.07780 1.30944 1.46017 1.27006 0.96346 1.05487 0.92111 0.83041 0.74246 0.71847 0.77882 1.21169 1.18771 1.20708 1.21637 0.94097 0.90447 1.56434 0.93456 1.18110 0.95199 0.93551 0.91075 0.93394 1.21074 0.80060 0.86199 0.80814 1.90555 1.63509 1.30264 1.62838 1.45820 1.49241 1.23350 1.18432 1.21272 0.93093 0.91722 0.94232 1.22282 1.00570 0.99860 0.94862 1.22283 0.86782 0.93841 0.90746 1.86424 1.33931 1.89891 1.26476 1.23666 0.99670 0.98471 0.98608 1.22725 0.99260 0.96099 0.98751 1.23099 1.02801 0.97914 0.92418 1.20189 0.93646 0.94100 0.96849 1.20827 0.98660 0.99478 0.93673 1.21365 0.97207 1.00018 0.96620 1.21317 0.92888 1.01756 0.99883 1.21332 1.00577 0.99879 0.92668 1.21172 0.95327 1.01915 0.98474 0.92373 0.75394 0.92183 0.92866 0.90487 0.88558 0.76390 0.88387 0.91493 0.90600 0.89795 0.91176 0.87142 0.88893 0.84515 0.83237 0.83902 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.65 13.56 21.45 0.29 -51.36 16 2 C -0.01 -0.41 5.45 84.66 0.46 0.05 16 3 Si 1.11 46.68 29.91 68.60 2.05 48.73 16 4 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.59 -30.18 7.42 25.60 0.19 -29.99 16 8 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 9 C 0.04 2.04 1.92 -13.03 -0.03 2.02 16 10 H 0.05 2.44 6.82 -2.39 -0.02 2.43 16 11 C 0.53 23.87 7.04 87.66 0.62 24.49 16 12 O -0.59 -29.18 15.46 -3.03 -0.05 -29.23 16 13 N -0.72 -25.68 5.46 -463.06 -2.53 -28.21 16 14 C 0.12 3.41 5.24 86.38 0.45 3.86 16 15 C -0.14 -2.95 4.97 30.59 0.15 -2.80 16 16 C 0.10 2.10 1.38 -10.27 -0.01 2.09 16 17 O -0.56 -13.00 13.39 -148.98 -1.99 -15.00 16 18 C -0.17 -2.95 7.32 31.12 0.23 -2.72 16 19 C -0.13 -2.09 8.02 31.12 0.25 -1.84 16 20 C -0.13 -2.12 7.47 31.12 0.23 -1.89 16 21 C -0.05 -2.25 4.03 -19.86 -0.08 -2.33 16 22 C -0.11 -5.02 8.36 22.27 0.19 -4.84 16 23 C -0.13 -5.17 10.05 22.27 0.22 -4.95 16 24 C -0.14 -4.85 10.05 22.27 0.22 -4.63 16 25 C -0.13 -4.65 10.05 22.27 0.22 -4.43 16 26 C -0.15 -6.59 9.25 22.27 0.21 -6.38 16 27 H 0.27 14.98 6.30 -92.71 -0.58 14.40 16 28 H 0.41 13.86 8.36 -92.71 -0.77 13.08 16 29 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 30 H 0.05 1.58 6.75 -2.39 -0.02 1.56 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.79 8.05 -2.39 -0.02 1.77 16 33 H 0.39 7.79 7.18 -74.06 -0.53 7.26 16 34 H 0.10 1.56 8.03 -2.38 -0.02 1.54 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.09 4.52 7.86 -2.91 -0.02 4.50 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 42 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.11 4.59 7.96 -2.91 -0.02 4.57 16 Total: -1.00 -66.64 363.27 1.19 -65.45 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.12 Total: 43.89 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.53 Total: -34.27 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.24 Total: -79.56 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -2.04 Total: -44.23 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.05 Total: 48.73 kcal Total: -66.64 1.19 -65.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362433910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.527 kcal (2) G-P(sol) polarization free energy of solvation -66.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds