Wall clock time and date at job start Tue Mar 31 2020 08:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99554 * 2 1 4 4 H 1.48507 * 109.47142 * 264.67187 * 3 2 1 5 5 H 1.48498 * 109.47255 * 24.67213 * 3 2 1 6 6 H 1.48502 * 109.46940 * 144.67689 * 3 2 1 7 7 C 1.37872 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99954 * 4.97870 * 7 2 1 9 9 C 1.50702 * 120.00051 * 184.97998 * 7 2 1 10 10 H 1.08995 * 109.46838 * 25.09584 * 9 7 2 11 11 C 1.50701 * 109.47213 * 145.09521 * 9 7 2 12 12 O 1.21284 * 119.99775 * 120.00259 * 11 9 7 13 13 N 1.34773 * 120.00005 * 299.99921 * 11 9 7 14 14 C 1.46501 * 119.99769 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.46971 * 324.99951 * 14 13 11 16 16 C 1.52997 * 109.47170 * 85.00255 * 14 13 11 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47039 * 299.99866 * 17 16 14 19 19 C 1.52997 * 109.47011 * 60.00012 * 18 17 16 20 20 C 1.53000 * 109.47210 * 299.99884 * 19 18 17 21 21 H 1.08994 * 109.47271 * 299.99887 * 20 19 18 22 22 O 1.42899 * 109.47105 * 179.97438 * 20 19 18 23 23 C 1.50698 * 109.46895 * 265.09969 * 9 7 2 24 24 C 1.38232 * 120.00003 * 305.01571 * 23 9 7 25 25 C 1.38237 * 120.00155 * 179.76792 * 24 23 9 26 26 C 1.38235 * 120.00050 * 0.48935 * 25 24 23 27 27 C 1.38241 * 119.99682 * 359.79072 * 26 25 24 28 28 C 1.38232 * 119.99953 * 359.95114 * 27 26 25 29 29 H 0.96993 * 120.00630 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99885 * 0.02562 * 13 11 9 31 31 H 1.09004 * 109.46896 * 59.99965 * 16 14 13 32 32 H 1.08999 * 109.47038 * 300.00142 * 16 14 13 33 33 H 1.08994 * 109.47271 * 60.00113 * 17 16 14 34 34 H 1.09001 * 109.47287 * 180.02562 * 17 16 14 35 35 H 1.08993 * 109.47095 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47360 * 300.00211 * 18 17 16 37 37 H 1.08999 * 109.47038 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47422 * 59.99907 * 19 18 17 39 39 H 0.96700 * 113.99946 * 60.00579 * 22 20 19 40 40 H 1.08004 * 120.00086 * 0.02562 * 24 23 9 41 41 H 1.07996 * 120.00023 * 180.24921 * 25 24 23 42 42 H 1.08000 * 120.00495 * 179.76263 * 26 25 24 43 43 H 1.08001 * 119.99816 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.00155 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6091 1.9815 -1.3941 5 1 1.3947 2.6826 0.5844 6 1 3.4859 1.4754 0.8095 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0821 9 6 3.5073 -1.1965 0.1128 10 1 3.8353 -0.2865 0.6151 11 6 3.9491 -2.3970 0.9094 12 8 4.6849 -3.2204 0.4076 13 7 3.5266 -2.5558 2.1793 14 6 3.9556 -3.7232 2.9534 15 1 4.0403 -4.5861 2.2928 16 6 5.3143 -3.4376 3.5963 17 6 5.7621 -4.6566 4.4053 18 6 4.7322 -4.9495 5.4983 19 6 3.3736 -5.2351 4.8555 20 6 2.9258 -4.0162 4.0464 21 1 2.8411 -3.1530 4.7066 22 8 1.6571 -4.2831 3.4456 23 6 4.1148 -1.2565 -1.2651 24 6 3.7601 -2.2720 -2.1332 25 6 4.3137 -2.3244 -3.3988 26 6 5.2297 -1.3669 -3.7927 27 6 5.5887 -0.3546 -2.9224 28 6 5.0311 -0.2992 -1.6588 29 1 -0.4851 0.8399 0.0004 30 1 2.9379 -1.8974 2.5804 31 1 5.2295 -2.5747 4.2569 32 1 6.0478 -3.2284 2.8176 33 1 5.8467 -5.5197 3.7451 34 1 6.7298 -4.4530 4.8636 35 1 5.0514 -5.8176 6.0749 36 1 4.6475 -4.0864 6.1585 37 1 2.6400 -5.4443 5.6341 38 1 3.4582 -6.0983 4.1952 39 1 0.9543 -4.4779 4.0806 40 1 3.0473 -3.0223 -1.8241 41 1 4.0335 -3.1155 -4.0784 42 1 5.6651 -1.4099 -4.7801 43 1 6.3047 0.3933 -3.2300 44 1 5.3119 0.4914 -0.9788 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362544882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:51 Heat of formation + Delta-G solvation = -82.848798 kcal Electronic energy + Delta-G solvation = -25443.473758 eV Core-core repulsion = 21938.499064 eV Total energy + Delta-G solvation = -3504.974695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75172 -38.70376 -37.48223 -35.44275 -33.60198 -33.47053 -31.44763 -30.07927 -29.94904 -28.87383 -27.33073 -23.69223 -22.73239 -22.16566 -21.78030 -20.73913 -20.03541 -19.05204 -17.14358 -17.06204 -16.50801 -16.03206 -15.79148 -14.70860 -14.54557 -14.44437 -14.30714 -13.89132 -13.64896 -13.50823 -13.28216 -12.96823 -12.71388 -12.63781 -12.43168 -12.33404 -12.00084 -11.81942 -11.51042 -11.23541 -11.07970 -10.95659 -10.87222 -10.74340 -10.41663 -10.25582 -10.09940 -9.88255 -9.82112 -9.45350 -8.89896 -8.60364 -8.30780 -8.07966 -7.75076 -6.23664 -4.26695 2.20692 2.27238 3.17973 3.25893 3.30649 3.66589 3.94744 4.21002 4.26816 4.66209 4.67954 4.85071 4.92243 5.07097 5.15754 5.22197 5.33783 5.43291 5.44880 5.59563 5.63297 5.65752 5.77234 5.84144 5.94871 6.01165 6.02214 6.03010 6.08717 6.18674 6.30395 6.34437 6.38198 6.48214 6.52774 6.80364 6.91167 7.21618 7.23661 7.31162 7.36149 7.65677 7.81165 7.85694 8.28040 8.40814 8.79541 9.22456 9.34277 10.87503 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.005211 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.361947 B = 5372.262314 C = 6445.553109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.083 0.917 9 C 0.018 3.982 10 H 0.071 0.929 11 C 0.538 3.462 12 O -0.565 6.565 13 N -0.716 5.716 14 C 0.157 3.843 15 H 0.088 0.912 16 C -0.129 4.129 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.099 3.901 21 H 0.057 0.943 22 O -0.550 6.550 23 C -0.026 4.026 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.138 4.138 29 H 0.267 0.733 30 H 0.405 0.595 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.373 0.627 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.189 -5.389 8.982 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.101 0.899 9 C -0.003 4.003 10 H 0.089 0.911 11 C 0.327 3.673 12 O -0.443 6.443 13 N -0.366 5.366 14 C 0.051 3.949 15 H 0.106 0.894 16 C -0.167 4.167 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.187 4.187 20 C 0.039 3.961 21 H 0.074 0.926 22 O -0.355 6.355 23 C -0.027 4.027 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.077 0.923 30 H 0.240 0.760 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.856 -5.741 8.063 13.281 hybrid contribution -0.348 1.193 0.669 1.411 sum 8.508 -4.548 8.732 13.012 Atomic orbital electron populations 1.69871 1.06136 1.27291 1.48639 1.24975 0.94690 0.98635 0.93710 0.87040 0.80122 0.83952 0.79669 1.19214 1.21216 1.18783 1.20547 0.86220 0.95376 1.52091 0.89877 1.18583 0.98358 0.93985 0.89420 0.91106 1.21068 0.77675 0.87791 0.80754 1.90579 1.37763 1.45772 1.70235 1.45760 1.51699 1.25330 1.13820 1.20750 0.91360 0.90832 0.91980 0.89439 1.21944 0.97130 0.98019 0.99657 1.21530 0.98292 0.98528 0.97301 1.21510 0.94593 1.01543 0.97865 1.22255 0.97600 0.99233 0.99638 1.22044 0.84432 0.95955 0.93680 0.92556 1.86721 1.18640 1.92997 1.37108 1.20086 0.92245 0.93180 0.97158 1.20852 0.97980 0.97639 0.92554 1.21029 0.98181 0.98950 0.96577 1.20851 0.99923 0.96397 0.99064 1.20871 1.00706 0.98700 0.94433 1.20964 0.98279 0.99766 0.96588 0.92252 0.76025 0.91800 0.90683 0.91617 0.91724 0.91775 0.91845 0.91562 0.90912 0.78075 0.86515 0.87164 0.87379 0.87331 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.87 20.28 27.18 -169.99 -4.62 15.65 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -5.72 6.06 56.52 0.34 -5.38 16 7 C -0.50 -13.33 8.06 -34.44 -0.28 -13.61 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.02 0.42 1.89 -94.08 -0.18 0.24 16 10 H 0.07 1.62 4.89 -51.93 -0.25 1.37 16 11 C 0.54 12.03 7.00 -10.99 -0.08 11.95 16 12 O -0.56 -13.65 15.04 5.55 0.08 -13.56 16 13 N -0.72 -13.62 4.84 -53.80 -0.26 -13.88 16 14 C 0.16 2.49 2.15 -67.93 -0.15 2.34 16 15 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 16 C -0.13 -1.72 5.49 -26.73 -0.15 -1.87 16 17 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 18 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 19 C -0.15 -1.51 5.54 -26.73 -0.15 -1.66 16 20 C 0.10 1.28 2.98 -26.73 -0.08 1.20 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 O -0.55 -8.22 13.18 -35.23 -0.46 -8.68 16 23 C -0.03 -0.59 4.09 -104.63 -0.43 -1.02 16 24 C -0.07 -1.63 8.25 -39.58 -0.33 -1.96 16 25 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 26 C -0.14 -2.60 10.05 -39.58 -0.40 -3.00 16 27 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 28 C -0.14 -2.88 9.46 -39.58 -0.37 -3.26 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.40 7.55 8.49 -40.82 -0.35 7.20 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.37 3.77 9.08 45.56 0.41 4.19 16 40 H 0.12 2.75 7.93 -52.48 -0.42 2.34 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.08 7.95 -52.49 -0.42 1.66 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.85 356.58 -9.01 -40.85 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.10 Total: 15.69 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.79 Total: -16.81 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.51 Total: -38.51 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.38 Total: -22.25 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.62 Total: 15.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.85 -9.01 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362544882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.996 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds