Wall clock time and date at job start Tue Mar 31 2020 08:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00153 * 2 1 4 4 H 1.48500 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46686 * 299.99816 * 3 2 1 6 6 H 1.48491 * 109.47342 * 59.99534 * 3 2 1 7 7 C 1.37877 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00000 * 185.08920 * 7 2 1 9 9 C 1.50694 * 120.00323 * 5.09222 * 7 2 1 10 10 H 1.09000 * 109.47280 * 185.76843 * 9 7 2 11 11 C 1.50702 * 109.47243 * 305.76977 * 9 7 2 12 12 O 1.21282 * 120.00493 * 119.99327 * 11 9 7 13 13 N 1.34777 * 119.99854 * 299.99845 * 11 9 7 14 14 C 1.46494 * 120.00471 * 179.97438 * 13 11 9 15 15 H 1.09010 * 109.46904 * 34.99502 * 14 13 11 16 16 C 1.53003 * 109.47213 * 275.00128 * 14 13 11 17 17 C 1.52994 * 109.47086 * 179.97438 * 16 14 13 18 18 C 1.53008 * 109.47196 * 60.00199 * 17 16 14 19 19 C 1.53003 * 109.46940 * 299.99890 * 18 17 16 20 20 C 1.52997 * 109.46885 * 59.99726 * 19 18 17 21 21 H 1.08998 * 109.47315 * 60.00045 * 20 19 18 22 22 O 1.42907 * 109.46995 * 180.02562 * 20 19 18 23 23 C 1.50705 * 109.47170 * 65.76513 * 9 7 2 24 24 C 1.38230 * 119.99910 * 174.81022 * 23 9 7 25 25 C 1.38244 * 119.99426 * 179.74910 * 24 23 9 26 26 C 1.38226 * 120.00101 * 0.52580 * 25 24 23 27 27 C 1.38233 * 120.00050 * 359.74866 * 26 25 24 28 28 C 1.38228 * 120.00242 * 359.97438 * 27 26 25 29 29 H 0.96995 * 120.00221 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00008 * 0.02562 * 13 11 9 31 31 H 1.08998 * 109.47108 * 299.99663 * 16 14 13 32 32 H 1.09008 * 109.46888 * 59.99909 * 16 14 13 33 33 H 1.09008 * 109.47555 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47778 * 300.00184 * 17 16 14 35 35 H 1.08998 * 109.46929 * 59.99644 * 18 17 16 36 36 H 1.08991 * 109.47451 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.46819 * 300.00078 * 19 18 17 38 38 H 1.08998 * 109.46841 * 179.97438 * 19 18 17 39 39 H 0.96700 * 113.99846 * 299.99858 * 22 20 19 40 40 H 1.07994 * 120.00596 * 0.02562 * 24 23 9 41 41 H 1.08004 * 119.99465 * 180.30009 * 25 24 23 42 42 H 1.08003 * 120.00098 * 179.77209 * 26 25 24 43 43 H 1.08006 * 119.99692 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.00493 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0835 9 6 1.2555 -2.4966 -0.1147 10 1 1.9508 -3.3274 0.0060 11 6 0.1994 -2.5655 0.9581 12 8 -0.9694 -2.6730 0.6526 13 7 0.5537 -2.5075 2.2572 14 6 -0.4729 -2.5738 3.3002 15 1 -1.2732 -3.2413 2.9803 16 6 -1.0427 -1.1751 3.5447 17 6 -2.1153 -1.2445 4.6335 18 6 -1.4950 -1.7759 5.9273 19 6 -0.9252 -3.1747 5.6828 20 6 0.1473 -3.1052 4.5939 21 1 0.9475 -2.4378 4.9141 22 8 0.6791 -4.4117 4.3651 23 6 0.6014 -2.5818 -1.4697 24 6 -0.0554 -3.7375 -1.8487 25 6 -0.6599 -3.8137 -3.0896 26 6 -0.5983 -2.7381 -3.9556 27 6 0.0634 -1.5844 -3.5788 28 6 0.6629 -1.5061 -2.3357 29 1 -0.4850 0.8400 -0.0004 30 1 1.4884 -2.4210 2.5016 31 1 -0.2425 -0.5076 3.8645 32 1 -1.4850 -0.7967 2.6230 33 1 -2.5216 -0.2481 4.8075 34 1 -2.9155 -1.9119 4.3134 35 1 -0.6949 -1.1085 6.2475 36 1 -2.2589 -1.8250 6.7031 37 1 -1.7254 -3.8420 5.3626 38 1 -0.4829 -3.5530 6.6044 39 1 1.0891 -4.8115 5.1443 40 1 -0.1001 -4.5794 -1.1737 41 1 -1.1772 -4.7150 -3.3838 42 1 -1.0674 -2.7989 -4.9265 43 1 0.1111 -0.7438 -4.2553 44 1 1.1795 -0.6046 -2.0411 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362946804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:57 Heat of formation + Delta-G solvation = -76.213459 kcal Electronic energy + Delta-G solvation = -25948.815818 eV Core-core repulsion = 22444.128854 eV Total energy + Delta-G solvation = -3504.686965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40608 -38.42729 -37.02697 -35.35002 -33.64035 -33.05774 -30.83854 -29.69783 -29.59854 -28.58331 -26.89848 -23.92197 -22.53506 -21.92580 -21.19656 -20.35289 -19.76180 -18.91770 -17.09098 -16.79491 -16.18874 -15.46426 -15.17380 -14.75801 -14.41186 -14.15509 -13.89687 -13.69656 -13.65740 -13.20353 -13.07553 -12.60338 -12.40264 -12.31575 -12.21883 -12.00399 -11.74465 -11.30190 -11.23828 -10.99099 -10.95629 -10.72325 -10.65419 -10.46918 -10.29317 -10.02597 -9.92992 -9.81029 -9.63126 -9.31222 -8.58579 -8.17216 -7.78740 -7.71610 -7.34808 -6.13407 -4.26815 2.54626 2.64063 3.18297 3.29235 3.31340 4.22231 4.27044 4.30222 4.51549 4.83031 4.98421 5.08318 5.11870 5.13939 5.35543 5.40431 5.56774 5.67852 5.72698 5.80183 5.86847 5.97980 6.04067 6.06986 6.16980 6.20634 6.28206 6.37484 6.41029 6.60684 6.66852 6.76566 6.87810 6.91060 6.99253 7.14010 7.27059 7.54892 7.65476 7.72813 7.74385 7.79755 7.86554 8.19427 8.31648 8.70057 8.96033 9.37283 9.90233 10.87092 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.005607 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.568727 B = 4992.404007 C = 6029.719901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.054 3.946 10 H 0.054 0.946 11 C 0.561 3.439 12 O -0.552 6.552 13 N -0.724 5.724 14 C 0.167 3.833 15 H 0.080 0.920 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.147 4.147 20 C 0.098 3.902 21 H 0.055 0.945 22 O -0.558 6.558 23 C -0.015 4.015 24 C -0.114 4.114 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.060 4.060 29 H 0.264 0.736 30 H 0.393 0.607 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.369 0.631 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -3.912 8.692 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.032 3.968 10 H 0.072 0.928 11 C 0.350 3.650 12 O -0.429 6.429 13 N -0.375 5.375 14 C 0.061 3.939 15 H 0.098 0.902 16 C -0.163 4.163 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.185 4.185 20 C 0.038 3.962 21 H 0.073 0.927 22 O -0.362 6.362 23 C -0.016 4.016 24 C -0.132 4.132 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.078 4.078 29 H 0.075 0.925 30 H 0.226 0.774 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.215 0.785 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.018 -3.751 7.835 8.746 hybrid contribution 0.855 1.143 0.810 1.641 sum -0.163 -2.608 8.645 9.031 Atomic orbital electron populations 1.70090 1.05190 1.26737 1.45522 1.25031 0.94894 0.99076 0.94478 0.86674 0.80440 0.84031 0.77873 1.19506 1.20712 1.20995 1.20791 0.93330 0.88991 1.54207 0.91527 1.17923 0.92626 0.98158 0.88053 0.92785 1.20734 0.90032 0.71812 0.82394 1.90516 1.20405 1.49822 1.82127 1.45643 1.08928 1.77560 1.05394 1.20554 0.91811 0.95845 0.85719 0.90198 1.21901 0.97940 0.96840 0.99647 1.21563 0.98564 1.00922 0.94730 1.21507 1.00127 0.95867 0.97930 1.22222 0.99648 0.98239 0.98397 1.22155 0.94458 0.84212 0.95359 0.92659 1.86653 1.78660 1.31585 1.39299 1.19851 0.94484 0.91854 0.95389 1.20893 0.98615 0.98257 0.95462 1.20775 1.01944 0.98154 0.95210 1.20778 1.01952 0.94609 0.98925 1.21059 1.00897 0.97204 0.97562 1.21416 0.96274 0.98894 0.91185 0.92544 0.77359 0.92302 0.89536 0.92029 0.91937 0.91988 0.92051 0.91057 0.91916 0.78468 0.88051 0.88038 0.88166 0.88056 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.32 10.41 55.43 0.58 -21.74 16 2 C 0.07 1.79 3.19 -17.82 -0.06 1.73 16 3 Si 0.88 19.57 29.54 -169.99 -5.02 14.55 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -13.15 7.62 -34.44 -0.26 -13.42 16 8 H 0.07 1.61 7.82 -52.48 -0.41 1.20 16 9 C 0.05 1.30 2.67 -94.07 -0.25 1.05 16 10 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 11 C 0.56 13.62 5.33 -10.98 -0.06 13.56 16 12 O -0.55 -15.15 14.82 5.56 0.08 -15.07 16 13 N -0.72 -14.95 4.84 -53.80 -0.26 -15.21 16 14 C 0.17 3.01 2.14 -67.93 -0.15 2.87 16 15 H 0.08 1.65 7.58 -51.92 -0.39 1.26 16 16 C -0.12 -2.19 5.49 -26.73 -0.15 -2.33 16 17 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 18 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 19 C -0.15 -1.66 5.55 -26.73 -0.15 -1.81 16 20 C 0.10 1.35 2.99 -26.73 -0.08 1.27 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 O -0.56 -7.73 13.18 -35.23 -0.46 -8.20 16 23 C -0.01 -0.36 4.50 -104.62 -0.47 -0.83 16 24 C -0.11 -2.60 8.75 -39.58 -0.35 -2.94 16 25 C -0.14 -2.94 10.05 -39.58 -0.40 -3.34 16 26 C -0.14 -2.91 10.05 -39.59 -0.40 -3.31 16 27 C -0.15 -3.22 10.05 -39.59 -0.40 -3.62 16 28 C -0.06 -1.45 8.00 -39.58 -0.32 -1.77 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 7.63 8.49 -40.82 -0.35 7.29 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.37 3.25 9.08 45.56 0.41 3.66 16 40 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 44 H 0.14 3.44 4.97 -52.49 -0.26 3.18 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -30.19 352.24 -9.62 -39.81 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -6.05 Total: 16.71 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.79 Total: -16.17 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.32 Total: -36.95 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.38 Total: -23.26 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.19 -9.62 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.401 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds