Wall clock time and date at job start Tue Mar 31 2020 08:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99574 * 2 1 4 4 H 1.48502 * 109.46682 * 240.00043 * 3 2 1 5 5 H 1.48496 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46966 * 120.00022 * 3 2 1 7 7 C 1.37871 * 120.00634 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00327 * 186.39191 * 7 2 1 9 9 C 1.50700 * 119.99690 * 6.38937 * 7 2 1 10 10 H 1.09006 * 109.47318 * 333.93950 * 9 7 2 11 11 C 1.50706 * 109.47192 * 213.94244 * 9 7 2 12 12 O 1.21277 * 119.99467 * 240.00004 * 11 9 7 13 13 N 1.34766 * 120.00073 * 59.99727 * 11 9 7 14 14 C 1.46498 * 120.00061 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.47318 * 35.00002 * 14 13 11 16 16 C 1.53000 * 109.47191 * 275.00173 * 14 13 11 17 17 C 1.53003 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47478 * 59.99627 * 17 16 14 19 19 C 1.53000 * 109.47178 * 300.00425 * 18 17 16 20 20 C 1.52998 * 109.47401 * 154.99891 * 14 13 11 21 21 H 1.09003 * 109.47347 * 60.00244 * 20 14 13 22 22 O 1.42901 * 109.47137 * 300.00375 * 20 14 13 23 23 C 1.50698 * 109.47284 * 93.93790 * 9 7 2 24 24 C 1.38236 * 119.99674 * 53.85021 * 23 9 7 25 25 C 1.38238 * 119.99549 * 179.76524 * 24 23 9 26 26 C 1.38233 * 120.00450 * 0.48686 * 25 24 23 27 27 C 1.38241 * 119.99707 * 359.78577 * 26 25 24 28 28 C 1.38233 * 119.99708 * 359.95945 * 27 26 25 29 29 H 0.96997 * 119.99946 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00665 * 0.02562 * 13 11 9 31 31 H 1.09001 * 109.47265 * 299.99806 * 16 14 13 32 32 H 1.08997 * 109.47425 * 59.99784 * 16 14 13 33 33 H 1.08994 * 109.47170 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.46522 * 299.99501 * 17 16 14 35 35 H 1.08998 * 109.46794 * 59.99925 * 18 17 16 36 36 H 1.08993 * 109.47397 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47265 * 299.99775 * 19 18 17 38 38 H 1.08997 * 109.47425 * 179.97438 * 19 18 17 39 39 H 0.96702 * 113.99873 * 179.97438 * 22 20 14 40 40 H 1.07996 * 120.00296 * 359.97438 * 24 23 9 41 41 H 1.08001 * 119.99933 * 180.25136 * 25 24 23 42 42 H 1.07991 * 120.00484 * 179.77009 * 26 25 24 43 43 H 1.08000 * 119.99843 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.99384 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0796 -1.1967 0.1047 9 6 1.2582 -2.4951 -0.1441 10 1 0.2377 -2.3708 0.2181 11 6 1.9507 -3.5637 0.6619 12 8 2.3792 -4.5560 0.1119 13 7 2.0936 -3.4167 1.9939 14 6 2.7672 -4.4553 2.7774 15 1 3.5712 -4.8928 2.1856 16 6 1.7602 -5.5441 3.1535 17 6 2.4636 -6.6285 3.9723 18 6 3.0450 -6.0099 5.2451 19 6 4.0520 -4.9211 4.8690 20 6 3.3491 -3.8372 4.0502 21 1 2.5451 -3.3997 4.6421 22 8 4.2896 -2.8202 3.6990 23 6 1.2303 -2.8995 -1.5956 24 6 2.4101 -2.9925 -2.3099 25 6 2.3848 -3.3682 -3.6400 26 6 1.1790 -3.6411 -4.2585 27 6 -0.0013 -3.5426 -3.5456 28 6 0.0244 -3.1720 -2.2141 29 1 -0.4850 0.8400 -0.0004 30 1 1.7505 -2.6233 2.4340 31 1 0.9562 -5.1067 3.7453 32 1 1.3457 -5.9845 2.2467 33 1 1.7463 -7.4043 4.2398 34 1 3.2678 -7.0660 3.3807 35 1 2.2408 -5.5723 5.8365 36 1 3.5464 -6.7823 5.8282 37 1 4.8563 -5.3586 4.2776 38 1 4.4659 -4.4801 5.7758 39 1 4.6990 -2.3838 4.4586 40 1 3.3517 -2.7750 -1.8281 41 1 3.3068 -3.4449 -4.1971 42 1 1.1590 -3.9310 -5.2986 43 1 -0.9434 -3.7554 -4.0288 44 1 -0.8977 -3.0946 -1.6572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362946807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:00 Heat of formation + Delta-G solvation = -87.543694 kcal Electronic energy + Delta-G solvation = -25366.294661 eV Core-core repulsion = 21861.116380 eV Total energy + Delta-G solvation = -3505.178281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65873 -38.54495 -37.35185 -35.45203 -33.57786 -33.40310 -31.03910 -29.91711 -29.89258 -28.78147 -26.97484 -23.91811 -22.72647 -22.11290 -21.54250 -20.60878 -19.99205 -19.03346 -17.16005 -16.69455 -16.38895 -15.77914 -15.66279 -14.66130 -14.57199 -14.29756 -14.12228 -13.89476 -13.70720 -13.45598 -13.28244 -12.84224 -12.56449 -12.48476 -12.28408 -12.18326 -11.61439 -11.58551 -11.36939 -11.18533 -10.98926 -10.96600 -10.84737 -10.70390 -10.34567 -10.23541 -10.16547 -9.94314 -9.81726 -9.38698 -8.70245 -8.48839 -8.20942 -7.90387 -7.56485 -6.21804 -4.25521 2.41618 2.44750 3.26515 3.30748 3.34447 3.80480 4.04456 4.20642 4.35210 4.68241 4.82215 4.91572 4.94269 5.15581 5.18280 5.23977 5.36882 5.46642 5.48229 5.66189 5.75547 5.83282 5.86275 5.93041 5.98086 6.04106 6.08144 6.12689 6.25257 6.32059 6.38070 6.51093 6.58014 6.66000 6.92258 7.02380 7.23111 7.36039 7.40832 7.49635 7.70544 7.77325 7.82243 8.00830 8.14002 8.51482 8.79209 9.34958 9.41097 10.86979 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.005363 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.650958 B = 5220.116049 C = 6741.549150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.048 3.952 10 H 0.090 0.910 11 C 0.530 3.470 12 O -0.571 6.571 13 N -0.717 5.717 14 C 0.156 3.844 15 H 0.086 0.914 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.099 3.901 21 H 0.057 0.943 22 O -0.553 6.553 23 C -0.010 4.010 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.266 0.734 30 H 0.405 0.595 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.372 0.628 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -7.829 8.637 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.108 0.892 11 C 0.320 3.680 12 O -0.450 6.450 13 N -0.368 5.368 14 C 0.051 3.949 15 H 0.104 0.896 16 C -0.167 4.167 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.187 4.187 20 C 0.039 3.961 21 H 0.075 0.925 22 O -0.357 6.357 23 C -0.011 4.011 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.218 0.782 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.045 -8.576 7.630 11.876 hybrid contribution 0.439 1.572 0.754 1.798 sum 3.484 -7.004 8.384 11.467 Atomic orbital electron populations 1.69876 1.05998 1.27434 1.48591 1.24942 0.94866 0.99405 0.93778 0.86560 0.79628 0.82379 0.78997 1.19961 1.21213 1.19950 1.20652 0.93531 0.88602 1.51918 0.91940 1.18130 0.99725 0.91895 0.87513 0.89174 1.21559 0.77855 0.86968 0.81597 1.90563 1.51176 1.32312 1.70988 1.45804 1.60217 1.22793 1.07982 1.20719 0.94818 0.88660 0.90750 0.89619 1.21941 0.98244 0.95918 1.00619 1.21532 1.00199 0.97832 0.96111 1.21506 0.98502 0.97734 0.97748 1.22243 0.99236 0.97254 0.99965 1.22057 0.90841 0.87897 0.95301 0.92531 1.86700 1.59825 1.52952 1.36210 1.20072 0.92062 0.91749 0.97237 1.20841 0.98392 0.97749 0.93221 1.20957 0.97025 1.01863 0.95425 1.20789 0.93060 1.04069 0.98843 1.20893 0.97188 1.02098 0.94867 1.20994 0.97804 1.00404 0.94686 0.92383 0.76035 0.91779 0.90646 0.91725 0.91680 0.91825 0.91808 0.90955 0.91643 0.78203 0.87090 0.87625 0.87751 0.87596 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.68 12.78 55.43 0.71 -22.97 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.51 -13.17 7.46 -34.44 -0.26 -13.43 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.19 2.44 -94.07 -0.23 0.96 16 10 H 0.09 2.33 7.00 -51.93 -0.36 1.96 16 11 C 0.53 12.20 7.01 -10.99 -0.08 12.12 16 12 O -0.57 -14.23 15.08 5.56 0.08 -14.15 16 13 N -0.72 -13.92 4.84 -53.81 -0.26 -14.18 16 14 C 0.16 2.53 2.15 -67.93 -0.15 2.39 16 15 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 16 C -0.13 -1.78 5.50 -26.73 -0.15 -1.93 16 17 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 18 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 19 C -0.15 -1.51 5.54 -26.76 -0.15 -1.66 16 20 C 0.10 1.28 2.98 -26.76 -0.08 1.20 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 O -0.55 -7.99 13.18 -35.23 -0.46 -8.45 16 23 C -0.01 -0.24 4.30 -104.63 -0.45 -0.69 16 24 C -0.08 -1.96 8.31 -39.58 -0.33 -2.28 16 25 C -0.13 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 27 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 28 C -0.12 -2.70 9.67 -39.59 -0.38 -3.08 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.40 7.74 8.49 -40.82 -0.35 7.40 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.37 3.55 9.08 45.56 0.41 3.96 16 40 H 0.11 2.64 7.89 -52.49 -0.41 2.23 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.40 7.96 -52.48 -0.42 1.98 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -30.60 361.12 -9.51 -40.11 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.14 Total: 15.35 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.85 Total: -16.70 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.45 Total: -37.16 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.38 Total: -22.60 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.60 -9.51 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.435 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds