Wall clock time and date at job start Tue Mar 31 2020 08:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47195 * 269.99949 * 3 2 1 5 5 H 1.48498 * 109.47526 * 30.00124 * 3 2 1 6 6 H 1.48508 * 109.46912 * 150.00040 * 3 2 1 7 7 C 1.37875 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00384 * 0.02562 * 7 2 1 10 10 O 1.42891 * 113.38304 * 46.91902 * 9 7 2 11 11 C 1.53509 * 114.16844 * 179.97438 * 9 7 2 12 12 N 1.47483 * 87.93195 * 139.66958 * 11 9 7 13 13 C 1.46900 * 111.00327 * 221.29634 * 12 11 9 14 14 C 1.53782 * 113.61119 * 175.00043 * 13 12 11 15 15 C 1.53788 * 87.08037 * 139.98302 * 14 13 12 16 16 O 1.42900 * 113.61514 * 89.11196 * 15 14 13 17 17 C 1.42901 * 113.99482 * 151.53197 * 16 15 14 18 18 C 1.50706 * 109.46553 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99761 * 90.00459 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 269.97560 * 18 17 16 24 24 C 1.53783 * 87.16987 * 334.52231 * 15 14 13 25 25 C 1.47479 * 87.83379 * 332.99225 * 12 11 9 26 26 H 0.97005 * 119.99488 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00264 * 313.08312 * 10 9 7 28 28 H 1.09004 * 113.47805 * 24.90616 * 11 9 7 29 29 H 1.08991 * 113.48009 * 254.43605 * 11 9 7 30 30 H 1.08996 * 112.84763 * 43.80253 * 13 12 11 31 31 H 1.08999 * 113.61699 * 25.43495 * 14 13 12 32 32 H 1.09000 * 113.69080 * 254.53467 * 14 13 12 33 33 H 1.08994 * 113.61304 * 219.93483 * 15 14 13 34 34 H 1.09003 * 109.47385 * 60.00164 * 17 16 15 35 35 H 1.09000 * 109.47029 * 299.99604 * 17 16 15 36 36 H 1.08005 * 120.00088 * 359.96779 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99990 * 0.02562 * 23 18 17 41 41 H 1.09004 * 113.61722 * 140.02227 * 24 15 14 42 42 H 1.08998 * 113.61713 * 270.92796 * 24 15 14 43 43 H 1.08998 * 113.47888 * 141.77856 * 25 12 11 44 44 H 1.09003 * 113.47586 * 272.23613 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1919 -2.5426 -0.9578 11 6 2.1495 -3.7437 0.0005 12 7 1.2075 -4.3583 0.9544 13 6 1.9258 -5.0862 2.0090 14 6 1.0058 -5.6490 3.1052 15 6 1.8904 -6.9069 3.0920 16 8 2.9997 -6.8361 3.9900 17 6 3.4331 -8.1067 4.4797 18 6 4.6013 -7.9138 5.4120 19 6 4.3829 -7.7263 6.7641 20 6 5.4546 -7.5499 7.6193 21 6 6.7445 -7.5620 7.1227 22 6 6.9627 -7.7447 5.7699 23 6 5.8913 -7.9249 4.9152 24 6 2.2489 -6.5467 1.6405 25 6 0.8554 -2.9966 1.3979 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3725 -1.7574 -0.9561 28 1 3.1390 -3.5650 0.4216 29 1 2.1863 -4.2528 -0.9625 30 1 2.7808 -4.5332 2.3978 31 1 -0.0150 -5.8296 2.7684 32 1 1.0504 -5.0938 4.0421 33 1 1.3291 -7.8365 3.1852 34 1 3.7369 -8.7346 3.6421 35 1 2.6151 -8.5874 5.0163 36 1 3.3751 -7.7175 7.1522 37 1 5.2839 -7.4029 8.6756 38 1 7.5818 -7.4246 7.7910 39 1 7.9703 -7.7498 5.3812 40 1 6.0619 -8.0715 3.8589 41 1 3.2976 -6.7148 1.3951 42 1 1.5673 -6.9722 0.9040 43 1 -0.2047 -2.8723 1.6191 44 1 1.4993 -2.6184 2.1919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363222650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:34 Heat of formation + Delta-G solvation = -4.985712 kcal Electronic energy + Delta-G solvation = -24101.910619 eV Core-core repulsion = 20600.312321 eV Total energy + Delta-G solvation = -3501.598298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97306 -39.40506 -38.15434 -35.71820 -33.63917 -32.01392 -31.81892 -31.12440 -27.62190 -26.23897 -25.78097 -24.85777 -24.35414 -22.80469 -22.06525 -21.51985 -19.28590 -18.59241 -17.40652 -17.08022 -16.36367 -15.81856 -15.72098 -15.15561 -15.06271 -14.90744 -14.41987 -14.08155 -13.82162 -13.63203 -13.46902 -13.11766 -12.84531 -12.47638 -12.20926 -12.12456 -11.80475 -11.66891 -11.48362 -11.32560 -11.24585 -11.07200 -10.94739 -10.71458 -10.43266 -10.15392 -9.93110 -9.79434 -9.41956 -9.17461 -9.13732 -9.05188 -8.60382 -8.11676 -7.83983 -6.23744 -4.33086 1.04019 1.18426 3.21891 3.28965 3.32285 3.33200 3.88860 4.27864 4.56584 4.58282 4.75502 4.77544 4.85918 4.90122 4.98756 4.99978 5.05852 5.11267 5.16134 5.28393 5.38291 5.43137 5.63578 5.73844 5.81291 5.95863 6.03598 6.05349 6.05997 6.15714 6.21483 6.27344 6.32946 6.37699 6.45887 6.49149 6.61220 6.75473 6.77139 7.10425 7.21599 7.24877 7.41749 7.80317 8.01578 8.13218 8.69022 9.36832 9.72479 10.82178 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002842 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.898529 B = 9850.808628 C =10755.902502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.066 0.934 9 C 0.246 3.754 10 O -0.571 6.571 11 C 0.006 3.994 12 N -0.463 5.463 13 C 0.029 3.971 14 C -0.124 4.124 15 C 0.062 3.938 16 O -0.359 6.359 17 C 0.102 3.898 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.018 4.018 26 H 0.271 0.729 27 H 0.389 0.611 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 -16.402 12.389 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.204 3.796 10 O -0.383 6.383 11 C -0.123 4.123 12 N -0.185 5.185 13 C -0.081 4.081 14 C -0.162 4.162 15 C 0.003 3.997 16 O -0.278 6.278 17 C 0.026 3.974 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.181 4.181 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.245 0.755 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.900 -17.172 12.102 22.444 hybrid contribution 0.823 1.730 0.582 2.002 sum 8.723 -15.442 12.685 21.805 Atomic orbital electron populations 1.69303 1.06102 1.27750 1.50815 1.25066 0.94991 0.99666 0.93453 0.86402 0.79789 0.82358 0.78348 1.20322 1.20957 1.19723 1.21604 0.93683 0.90638 1.51234 0.91622 1.19390 0.85059 0.90670 0.84439 1.86023 1.45106 1.47987 1.59173 1.24004 0.95295 0.96350 0.96660 1.69069 1.26315 1.13756 1.09373 1.23612 0.96178 0.94617 0.93702 1.23166 0.98580 0.95427 0.99004 1.23034 0.87953 0.98504 0.90178 1.87994 1.49295 1.27739 1.62748 1.21345 0.94115 0.86515 0.95445 1.19652 0.94021 1.01292 0.93889 1.21087 0.99236 0.98459 0.92918 1.21152 0.92719 1.00602 0.99806 1.21199 0.97052 0.99627 0.95603 1.21164 0.98980 1.00389 0.93678 1.21103 0.92022 0.98624 0.99861 1.23482 1.01720 0.96875 0.95983 1.24579 1.00614 0.87785 1.01736 0.91876 0.75495 0.91993 0.91332 0.91419 0.88367 0.91165 0.90959 0.92450 0.92485 0.85918 0.85943 0.86065 0.85904 0.85870 0.91554 0.88691 0.91466 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 11.02 55.43 0.61 -23.86 16 2 C 0.07 1.87 5.40 -17.82 -0.10 1.78 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.55 8.68 -34.44 -0.30 -14.84 16 8 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.25 6.40 1.57 -91.25 -0.14 6.26 16 10 O -0.57 -15.80 13.54 -35.23 -0.48 -16.28 16 11 C 0.01 0.13 7.13 -7.55 -0.05 0.08 16 12 N -0.46 -9.89 6.33 -235.45 -1.49 -11.38 16 13 C 0.03 0.51 2.67 -66.76 -0.18 0.33 16 14 C -0.12 -1.91 7.58 -25.91 -0.20 -2.11 16 15 C 0.06 0.82 4.36 -25.91 -0.11 0.71 16 16 O -0.36 -4.99 10.26 -35.23 -0.36 -5.35 16 17 C 0.10 1.09 5.91 36.01 0.21 1.30 16 18 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 19 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 24 C -0.14 -2.12 7.73 -25.77 -0.20 -2.32 16 25 C -0.02 -0.43 7.02 -7.55 -0.05 -0.48 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.39 10.92 6.34 45.56 0.29 11.21 16 28 H 0.06 1.35 7.71 -51.93 -0.40 0.95 16 29 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 31 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 34 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.06 1.36 7.83 -51.93 -0.41 0.95 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -29.48 364.14 -11.28 -40.76 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.37 Total: 13.08 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.66 Total: -18.12 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.88 Total: -35.24 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.84 Total: -21.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.48 -11.28 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363222650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.771 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds