Wall clock time and date at job start Tue Mar 31 2020 08:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47195 * 269.99949 * 3 2 1 5 5 H 1.48498 * 109.47526 * 30.00124 * 3 2 1 6 6 H 1.48508 * 109.46912 * 150.00040 * 3 2 1 7 7 C 1.37875 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00384 * 0.02562 * 7 2 1 10 10 O 1.42891 * 113.38304 * 46.91902 * 9 7 2 11 11 C 1.53509 * 114.16844 * 179.97438 * 9 7 2 12 12 N 1.47483 * 87.93195 * 139.66958 * 11 9 7 13 13 C 1.46900 * 111.00327 * 221.29634 * 12 11 9 14 14 C 1.53782 * 113.61119 * 175.00043 * 13 12 11 15 15 C 1.53788 * 87.08037 * 139.98302 * 14 13 12 16 16 O 1.42900 * 113.61514 * 89.11196 * 15 14 13 17 17 C 1.42901 * 113.99482 * 151.53197 * 16 15 14 18 18 C 1.50706 * 109.46553 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99761 * 90.00459 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 269.97560 * 18 17 16 24 24 C 1.53783 * 87.16987 * 334.52231 * 15 14 13 25 25 C 1.47479 * 87.83379 * 332.99225 * 12 11 9 26 26 H 0.97005 * 119.99488 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00264 * 313.08312 * 10 9 7 28 28 H 1.09004 * 113.47805 * 24.90616 * 11 9 7 29 29 H 1.08991 * 113.48009 * 254.43605 * 11 9 7 30 30 H 1.08996 * 112.84763 * 43.80253 * 13 12 11 31 31 H 1.08999 * 113.61699 * 25.43495 * 14 13 12 32 32 H 1.09000 * 113.69080 * 254.53467 * 14 13 12 33 33 H 1.08994 * 113.61304 * 219.93483 * 15 14 13 34 34 H 1.09003 * 109.47385 * 60.00164 * 17 16 15 35 35 H 1.09000 * 109.47029 * 299.99604 * 17 16 15 36 36 H 1.08005 * 120.00088 * 359.96779 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99990 * 0.02562 * 23 18 17 41 41 H 1.09004 * 113.61722 * 140.02227 * 24 15 14 42 42 H 1.08998 * 113.61713 * 270.92796 * 24 15 14 43 43 H 1.08998 * 113.47888 * 141.77856 * 25 12 11 44 44 H 1.09003 * 113.47586 * 272.23613 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1919 -2.5426 -0.9578 11 6 2.1495 -3.7437 0.0005 12 7 1.2075 -4.3583 0.9544 13 6 1.9258 -5.0862 2.0090 14 6 1.0058 -5.6490 3.1052 15 6 1.8904 -6.9069 3.0920 16 8 2.9997 -6.8361 3.9900 17 6 3.4331 -8.1067 4.4797 18 6 4.6013 -7.9138 5.4120 19 6 4.3829 -7.7263 6.7641 20 6 5.4546 -7.5499 7.6193 21 6 6.7445 -7.5620 7.1227 22 6 6.9627 -7.7447 5.7699 23 6 5.8913 -7.9249 4.9152 24 6 2.2489 -6.5467 1.6405 25 6 0.8554 -2.9966 1.3979 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3725 -1.7574 -0.9561 28 1 3.1390 -3.5650 0.4216 29 1 2.1863 -4.2528 -0.9625 30 1 2.7808 -4.5332 2.3978 31 1 -0.0150 -5.8296 2.7684 32 1 1.0504 -5.0938 4.0421 33 1 1.3291 -7.8365 3.1852 34 1 3.7369 -8.7346 3.6421 35 1 2.6151 -8.5874 5.0163 36 1 3.3751 -7.7175 7.1522 37 1 5.2839 -7.4029 8.6756 38 1 7.5818 -7.4246 7.7910 39 1 7.9703 -7.7498 5.3812 40 1 6.0619 -8.0715 3.8589 41 1 3.2976 -6.7148 1.3951 42 1 1.5673 -6.9722 0.9040 43 1 -0.2047 -2.8723 1.6191 44 1 1.4993 -2.6184 2.1919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363222650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:34 Heat of formation + Delta-G solvation = -24.666004 kcal Electronic energy + Delta-G solvation = -24102.764020 eV Core-core repulsion = 20600.312321 eV Total energy + Delta-G solvation = -3502.451699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40886 -40.31280 -39.46651 -37.01757 -35.45885 -34.10471 -32.62250 -31.80779 -29.45602 -27.31999 -27.11796 -26.49022 -25.99289 -23.55746 -23.48940 -22.25173 -20.59063 -20.54132 -19.23645 -17.99596 -17.45016 -17.13151 -16.91828 -16.61331 -16.52874 -16.02877 -15.87931 -15.46172 -15.19755 -14.78033 -14.66175 -14.27732 -14.01243 -13.73083 -13.55434 -13.43616 -13.32484 -13.15044 -13.10280 -12.89068 -12.62300 -12.42100 -12.25827 -12.12060 -11.92055 -11.82310 -11.31437 -11.29370 -11.01270 -10.63193 -10.46764 -10.08109 -9.84110 -9.78062 -9.69520 -8.26991 -6.44899 0.31902 0.48104 1.41038 1.42309 1.52875 2.35893 2.50721 2.93114 3.06262 3.25785 3.51075 3.65992 3.76528 3.91788 3.93842 3.99044 4.13444 4.19782 4.26064 4.29829 4.33189 4.35859 4.42155 4.50245 4.57143 4.63759 4.75602 4.80887 4.84637 4.88046 4.96621 5.06249 5.12264 5.13761 5.15805 5.25239 5.40143 5.42580 5.53145 5.59094 5.65314 5.73933 5.95331 6.08051 6.28304 6.39645 6.60486 7.28077 7.54890 8.78226 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002842 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.898529 B = 9850.808628 C =10755.902502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.026 3.974 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.220 3.780 10 O -0.582 6.582 11 C 0.015 3.985 12 N -0.457 5.457 13 C 0.012 3.988 14 C -0.122 4.122 15 C 0.080 3.920 16 O -0.381 6.381 17 C 0.099 3.901 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.115 4.115 24 C -0.133 4.133 25 C -0.007 4.007 26 H 0.275 0.725 27 H 0.384 0.616 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -17.300 13.449 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.174 4.174 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.081 0.919 9 C 0.179 3.821 10 O -0.394 6.394 11 C -0.114 4.114 12 N -0.180 5.180 13 C -0.097 4.097 14 C -0.160 4.160 15 C 0.022 3.978 16 O -0.301 6.301 17 C 0.024 3.976 18 C -0.109 4.109 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.133 4.133 24 C -0.171 4.171 25 C -0.136 4.136 26 H 0.085 0.915 27 H 0.238 0.762 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.891 -18.094 13.167 24.079 hybrid contribution 0.547 1.983 0.293 2.078 sum 9.438 -16.111 13.460 23.018 Atomic orbital electron populations 1.69375 1.07197 1.28733 1.50700 1.25842 0.95866 1.02833 0.92824 0.85379 0.78542 0.78197 0.78453 1.19815 1.20281 1.19382 1.21849 0.93779 0.91839 1.52329 0.91894 1.19734 0.85412 0.91786 0.85207 1.86002 1.45576 1.47720 1.60062 1.23880 0.95233 0.95009 0.97261 1.69005 1.26565 1.12311 1.10084 1.23768 0.96280 0.95712 0.93937 1.23162 0.98730 0.96490 0.97634 1.22860 0.87532 0.98635 0.88819 1.87969 1.49439 1.29930 1.62781 1.21524 0.94680 0.85398 0.96017 1.19834 0.94358 1.02297 0.94422 1.21328 1.00150 0.98685 0.92971 1.21481 0.92675 1.00002 1.00854 1.21553 0.97812 0.98767 0.95862 1.21471 0.99659 0.99985 0.94016 1.21317 0.92383 0.99179 1.00451 1.23448 1.02142 0.94058 0.97493 1.24309 0.99402 0.89481 1.00431 0.91490 0.76152 0.91430 0.91138 0.93125 0.88004 0.91673 0.87687 0.91283 0.90775 0.85046 0.83926 0.83787 0.84142 0.85440 0.91150 0.88137 0.92985 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 11.02 21.45 0.24 -50.28 16 2 C 0.03 1.40 5.40 84.65 0.46 1.85 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.56 -30.95 8.68 25.60 0.22 -30.73 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.22 11.64 1.57 -11.20 -0.02 11.62 16 10 O -0.58 -32.90 13.54 -148.98 -2.02 -34.92 16 11 C 0.02 0.69 7.13 83.57 0.60 1.29 16 12 N -0.46 -19.58 6.33 -899.21 -5.70 -25.27 16 13 C 0.01 0.44 2.67 45.53 0.12 0.56 16 14 C -0.12 -3.64 7.58 31.12 0.24 -3.40 16 15 C 0.08 1.95 4.36 31.12 0.14 2.08 16 16 O -0.38 -10.00 10.26 -148.98 -1.53 -11.52 16 17 C 0.10 1.94 5.91 71.24 0.42 2.36 16 18 C -0.11 -2.26 5.51 -19.86 -0.11 -2.37 16 19 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 20 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 21 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 24 C -0.13 -3.74 7.73 31.21 0.24 -3.49 16 25 C -0.01 -0.32 7.02 83.57 0.59 0.27 16 26 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 27 H 0.38 22.12 6.34 -74.06 -0.47 21.65 16 28 H 0.07 2.97 7.71 -2.38 -0.02 2.96 16 29 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.05 1.98 7.84 -2.39 -0.02 1.96 16 31 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 1.93 7.88 -2.39 -0.02 1.91 16 34 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 36 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.05 2.49 7.83 -2.39 -0.02 2.47 16 Total: -1.00 -63.11 364.14 -2.47 -65.59 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.51 Total: 41.67 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.99 Total: -29.67 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -5.46 Total: -75.55 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -3.54 Total: -46.44 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.11 -2.47 -65.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363222650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.919 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds