Wall clock time and date at job start Tue Mar 31 2020 08:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47113 * 264.59299 * 3 2 1 5 5 H 1.48507 * 109.47051 * 24.58958 * 3 2 1 6 6 H 1.48498 * 109.47157 * 144.58957 * 3 2 1 7 7 C 1.37880 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00036 * 354.22900 * 7 2 1 9 9 C 1.50701 * 119.99542 * 174.22920 * 7 2 1 10 10 H 1.08996 * 109.47420 * 4.09958 * 9 7 2 11 11 C 1.50695 * 109.46909 * 244.08902 * 9 7 2 12 12 O 1.21279 * 120.00294 * 254.60723 * 11 9 7 13 13 N 1.34783 * 119.99712 * 74.61697 * 11 9 7 14 14 C 1.46497 * 119.99806 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47004 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47125 * 181.90061 * 15 14 13 17 17 C 1.53003 * 115.55359 * 294.31776 * 16 15 14 18 18 O 1.42900 * 109.46833 * 294.70499 * 17 16 15 19 19 C 1.53003 * 117.49831 * 148.65185 * 16 15 14 20 20 C 1.52998 * 117.50006 * 79.99113 * 16 15 14 21 21 C 1.50699 * 109.46596 * 124.09578 * 9 7 2 22 22 C 1.38232 * 120.00327 * 50.99862 * 21 9 7 23 23 C 1.38243 * 120.00384 * 179.81123 * 22 21 9 24 24 C 1.38241 * 119.99422 * 0.39443 * 23 22 21 25 25 C 1.38232 * 120.00161 * 359.86127 * 24 23 22 26 26 C 1.38239 * 120.00239 * 359.95088 * 25 24 23 27 27 H 0.97003 * 119.99780 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99600 * 359.97438 * 13 11 9 29 29 H 1.08998 * 109.47198 * 299.99467 * 14 13 11 30 30 H 1.09003 * 109.47167 * 59.99741 * 14 13 11 31 31 H 1.09001 * 109.46770 * 301.90364 * 15 14 13 32 32 H 1.09007 * 109.46814 * 61.89892 * 15 14 13 33 33 H 1.09001 * 109.46827 * 54.69472 * 17 16 15 34 34 H 1.08993 * 109.47481 * 174.69992 * 17 16 15 35 35 H 0.96703 * 113.99708 * 179.97438 * 18 17 16 36 36 H 1.09000 * 117.49768 * 359.97438 * 19 16 15 37 37 H 1.08998 * 117.50086 * 145.01894 * 19 16 15 38 38 H 1.09002 * 117.50009 * 214.97952 * 20 16 15 39 39 H 1.09000 * 117.49979 * 359.97438 * 20 16 15 40 40 H 1.07999 * 120.00060 * 359.97438 * 22 21 9 41 41 H 1.07997 * 120.00055 * 180.23459 * 23 22 21 42 42 H 1.08003 * 119.99694 * 179.83943 * 24 23 22 43 43 H 1.08000 * 120.00207 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.00311 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6110 1.9804 -1.3938 5 1 1.3941 2.6830 0.5826 6 1 3.4849 1.4759 0.8112 7 6 2.0046 -1.1941 0.0005 8 1 1.4686 -2.1270 0.0950 9 6 3.5058 -1.1974 -0.1307 10 1 3.8719 -0.1708 -0.1412 11 6 3.8963 -1.8834 -1.4144 12 8 4.3630 -3.0024 -1.3864 13 7 3.7270 -1.2531 -2.5937 14 6 4.1071 -1.9197 -3.8416 15 6 3.8135 -0.9942 -5.0242 16 6 4.1662 -1.7083 -6.3305 17 6 5.6507 -2.0185 -6.5331 18 8 6.3811 -0.7959 -6.6498 19 6 3.3418 -1.3592 -7.5712 20 6 3.1528 -2.7130 -6.8822 21 6 4.1104 -1.9343 1.0366 22 6 3.6548 -3.1966 1.3680 23 6 4.2120 -3.8742 2.4364 24 6 5.2193 -3.2860 3.1783 25 6 5.6713 -2.0215 2.8501 26 6 5.1167 -1.3456 1.7794 27 1 -0.4850 0.8401 -0.0004 28 1 3.3535 -0.3582 -2.6161 29 1 5.1713 -2.1541 -3.8188 30 1 3.5344 -2.8408 -3.9506 31 1 2.7553 -0.7330 -5.0270 32 1 4.4114 -0.0873 -4.9329 33 1 6.0234 -2.5843 -5.6791 34 1 5.7783 -2.6063 -7.4420 35 1 7.3317 -0.9166 -6.7801 36 1 2.5479 -0.6212 -7.4567 37 1 3.8569 -1.3510 -8.5318 38 1 3.5437 -3.5949 -7.3898 39 1 2.2351 -2.8657 -6.3144 40 1 2.8653 -3.6546 0.7907 41 1 3.8586 -4.8619 2.6930 42 1 5.6529 -3.8143 4.0146 43 1 6.4579 -1.5618 3.4300 44 1 5.4701 -0.3579 1.5227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363237752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:19 Heat of formation + Delta-G solvation = -49.252149 kcal Electronic energy + Delta-G solvation = -24570.646187 eV Core-core repulsion = 21067.128353 eV Total energy + Delta-G solvation = -3503.517835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.39602 -38.83516 -37.77964 -35.95614 -34.21889 -33.60608 -31.54747 -30.13170 -29.97015 -27.72491 -26.76862 -23.99894 -23.05705 -22.33778 -21.83228 -20.81774 -19.58238 -18.73838 -17.45353 -17.17301 -16.26779 -16.14984 -15.69228 -15.61104 -15.03222 -14.59156 -14.41279 -14.08255 -13.72088 -13.71182 -13.10292 -12.94233 -12.89824 -12.67237 -12.58650 -12.08238 -11.91765 -11.82103 -11.61025 -11.41953 -11.14603 -11.08880 -10.96911 -10.47513 -10.46066 -10.13767 -10.10876 -10.00193 -9.77470 -9.46113 -9.05940 -8.67675 -8.33607 -8.13029 -7.81218 -6.32064 -4.33946 2.15263 2.21911 3.07416 3.20396 3.21261 3.46185 3.69007 3.98162 4.17218 4.18524 4.60019 4.63781 4.69432 4.90403 5.03238 5.04161 5.23975 5.34103 5.51696 5.54899 5.56242 5.59558 5.62685 5.71316 5.74127 5.81114 5.95311 6.01817 6.02892 6.14783 6.19647 6.29759 6.33682 6.40662 6.44266 6.74296 6.86975 7.17005 7.17875 7.25611 7.29591 7.46952 7.60431 7.79775 8.20053 8.35909 8.72007 9.19149 9.25456 10.79445 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.004344 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.650061 B = 6444.154832 C = 7564.411109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.865 3.135 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.027 3.973 10 H 0.063 0.937 11 C 0.529 3.471 12 O -0.563 6.563 13 N -0.734 5.734 14 C 0.127 3.873 15 C -0.092 4.092 16 C -0.121 4.121 17 C 0.112 3.888 18 O -0.568 6.568 19 C -0.165 4.165 20 C -0.167 4.167 21 C -0.025 4.025 22 C -0.072 4.072 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.133 4.133 27 H 0.269 0.731 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.377 0.623 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.942 -1.655 -9.756 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.542 4.542 8 H 0.102 0.898 9 C 0.006 3.994 10 H 0.081 0.919 11 C 0.318 3.682 12 O -0.442 6.442 13 N -0.386 5.386 14 C 0.003 3.997 15 C -0.130 4.130 16 C -0.122 4.122 17 C 0.034 3.966 18 O -0.373 6.373 19 C -0.202 4.202 20 C -0.204 4.204 21 C -0.026 4.026 22 C -0.090 4.090 23 C -0.148 4.148 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.151 4.151 27 H 0.079 0.921 28 H 0.232 0.768 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.224 0.776 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.481 -2.092 -9.657 13.694 hybrid contribution 0.592 1.105 -0.105 1.258 sum 10.073 -0.987 -9.762 14.062 Atomic orbital electron populations 1.69866 1.06177 1.27488 1.48108 1.25073 0.94809 0.98690 0.93805 0.87022 0.80653 0.83900 0.79272 1.19557 1.20797 1.18564 1.20601 0.86404 0.95534 1.51629 0.89768 1.18422 0.98487 0.95391 0.87138 0.91919 1.21583 0.74561 0.86328 0.85740 1.90563 1.45770 1.19985 1.87879 1.45936 1.66689 1.20278 1.05663 1.21124 0.99823 0.95759 0.83004 1.21266 1.02056 0.98501 0.91158 1.21237 0.91502 1.04170 0.95277 1.21637 0.89718 0.85822 0.99422 1.86501 1.23354 1.31207 1.96228 1.23005 1.02484 0.98770 0.95983 1.23081 1.00522 0.93303 1.03468 1.19870 0.92625 0.93995 0.96105 1.20914 0.98411 0.94223 0.95484 1.21049 0.97631 0.99571 0.96597 1.20876 0.98878 0.95956 1.00351 1.20883 1.00486 0.95448 0.98018 1.20994 0.97494 0.99733 0.96909 0.92070 0.76789 0.92433 0.92083 0.90959 0.90420 0.92722 0.93757 0.77636 0.88553 0.88851 0.88715 0.87924 0.86282 0.87099 0.87328 0.87234 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 13.96 55.43 0.77 -24.12 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 19.39 27.04 -169.99 -4.60 14.79 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.67 6.66 56.52 0.38 -5.30 16 7 C -0.50 -13.25 8.31 -34.44 -0.29 -13.54 16 8 H 0.08 2.46 7.39 -52.49 -0.39 2.07 16 9 C 0.03 0.63 2.26 -94.08 -0.21 0.42 16 10 H 0.06 1.40 4.42 -51.93 -0.23 1.17 16 11 C 0.53 11.94 6.98 -10.98 -0.08 11.86 16 12 O -0.56 -13.82 15.36 5.56 0.09 -13.74 16 13 N -0.73 -14.14 5.56 -60.29 -0.33 -14.48 16 14 C 0.13 2.06 5.48 -4.04 -0.02 2.04 16 15 C -0.09 -1.24 5.16 -26.73 -0.14 -1.38 16 16 C -0.12 -1.40 1.77 -154.51 -0.27 -1.67 16 17 C 0.11 1.16 6.72 37.16 0.25 1.41 16 18 O -0.57 -6.09 13.57 -35.23 -0.48 -6.57 16 19 C -0.17 -1.70 9.94 -26.69 -0.27 -1.97 16 20 C -0.17 -1.71 9.94 -26.69 -0.27 -1.98 16 21 C -0.03 -0.57 4.42 -104.62 -0.46 -1.03 16 22 C -0.07 -1.59 8.15 -39.58 -0.32 -1.91 16 23 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.13 -2.68 9.67 -39.58 -0.38 -3.06 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.40 7.37 8.47 -40.82 -0.35 7.02 16 29 H 0.06 0.94 7.09 -51.93 -0.37 0.57 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.05 0.58 7.03 -51.93 -0.37 0.21 16 34 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.38 2.31 9.12 45.56 0.42 2.72 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.12 2.75 7.35 -52.49 -0.39 2.36 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 2.03 7.97 -52.49 -0.42 1.61 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -31.59 367.08 -8.66 -40.25 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -5.89 Total: 15.51 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.75 Total: -17.18 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.44 Total: -38.60 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.39 Total: -20.31 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.60 Total: 14.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.59 -8.66 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363237752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.003 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds