Wall clock time and date at job start Tue Mar 31 2020 08:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48498 * 109.46921 * 274.97590 * 3 2 1 5 5 H 1.48497 * 109.47446 * 34.97080 * 3 2 1 6 6 H 1.48501 * 109.47310 * 154.97334 * 3 2 1 7 7 C 1.37875 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99648 * 185.20630 * 7 2 1 9 9 C 1.50697 * 120.00005 * 5.21353 * 7 2 1 10 10 H 1.08998 * 109.47518 * 332.71146 * 9 7 2 11 11 C 1.50703 * 109.47003 * 212.71392 * 9 7 2 12 12 O 1.21277 * 120.00010 * 254.18454 * 11 9 7 13 13 N 1.34774 * 119.99886 * 74.17750 * 11 9 7 14 14 C 1.46506 * 119.99604 * 183.73384 * 13 11 9 15 15 C 1.53008 * 109.47060 * 266.90001 * 14 13 11 16 16 O 1.42895 * 109.46628 * 66.25733 * 15 14 13 17 17 C 1.46496 * 120.00407 * 3.73920 * 13 11 9 18 18 C 1.52998 * 109.47199 * 89.49375 * 17 13 11 19 19 C 1.53003 * 117.49959 * 116.25454 * 18 17 13 20 20 C 1.53002 * 117.49963 * 184.91753 * 18 17 13 21 21 C 1.50699 * 109.47442 * 92.71396 * 9 7 2 22 22 C 1.38244 * 119.99801 * 52.27230 * 21 9 7 23 23 C 1.38235 * 119.99698 * 179.79334 * 22 21 9 24 24 C 1.38237 * 120.00094 * 0.43305 * 23 22 21 25 25 C 1.38237 * 119.99880 * 359.82024 * 24 23 22 26 26 C 1.38234 * 120.00037 * 232.54407 * 21 9 7 27 27 H 0.97000 * 120.00066 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47493 * 26.90401 * 14 13 11 29 29 H 1.09000 * 109.46887 * 146.90527 * 14 13 11 30 30 H 1.09001 * 109.46721 * 186.26201 * 15 14 13 31 31 H 1.09002 * 109.46848 * 306.25922 * 15 14 13 32 32 H 0.96702 * 113.99519 * 184.96670 * 16 15 14 33 33 H 1.09004 * 109.46914 * 329.49832 * 17 13 11 34 34 H 1.08999 * 109.47654 * 209.49382 * 17 13 11 35 35 H 1.08996 * 115.55174 * 330.58489 * 18 17 13 36 36 H 1.08998 * 117.49866 * 215.00081 * 19 18 17 37 37 H 1.09000 * 117.49631 * 0.02562 * 19 18 17 38 38 H 1.09003 * 117.49929 * 359.97438 * 20 18 17 39 39 H 1.08996 * 117.49919 * 145.00147 * 20 18 17 40 40 H 1.07991 * 120.00010 * 359.97438 * 22 21 9 41 41 H 1.07997 * 119.99716 * 180.27752 * 23 22 21 42 42 H 1.07995 * 120.00103 * 179.83848 * 24 23 22 43 43 H 1.08000 * 119.99934 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00115 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5031 2.6201 0.8024 6 1 3.5953 1.4122 0.5923 7 6 2.0046 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0854 9 6 1.2557 -2.4965 -0.1175 10 1 0.2488 -2.3742 0.2816 11 6 1.9788 -3.5641 0.6625 12 8 2.6093 -4.4198 0.0784 13 7 1.9250 -3.5679 2.0092 14 6 2.6939 -4.5559 2.7701 15 6 1.8159 -5.7764 3.0544 16 8 1.5088 -6.4386 1.8260 17 6 1.0977 -2.5842 2.7120 18 6 -0.3136 -3.1447 2.8983 19 6 -0.7967 -3.3809 4.3307 20 6 -1.3660 -2.2193 3.5122 21 6 1.1759 -2.9005 -1.5671 22 6 2.3256 -2.9597 -2.3324 23 6 2.2529 -3.3345 -3.6610 24 6 1.0295 -3.6414 -4.2266 25 6 -0.1208 -3.5772 -3.4627 26 6 -0.0476 -3.2066 -2.1329 27 1 -0.4850 0.8400 -0.0004 28 1 3.5654 -4.8621 2.1916 29 1 3.0197 -4.1154 3.7124 30 1 2.3490 -6.4618 3.7134 31 1 0.8918 -5.4552 3.5350 32 1 0.8929 -7.1780 1.9211 33 1 1.0496 -1.6657 2.1271 34 1 1.5357 -2.3714 3.6872 35 1 -0.6455 -3.8465 2.1332 36 1 -1.4464 -4.2379 4.5079 37 1 -0.1091 -3.1365 5.1404 38 1 -1.0528 -1.2112 3.7839 39 1 -2.3902 -2.3123 3.1510 40 1 3.2808 -2.7159 -1.8916 41 1 3.1516 -3.3850 -4.2578 42 1 0.9723 -3.9317 -5.2653 43 1 -1.0767 -3.8167 -3.9046 44 1 -0.9463 -3.1566 -1.5361 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412937017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:44 Heat of formation + Delta-G solvation = -35.557401 kcal Electronic energy + Delta-G solvation = -26083.528555 eV Core-core repulsion = 22580.604569 eV Total energy + Delta-G solvation = -3502.923986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.39541 -37.98324 -36.82382 -36.34629 -33.99042 -33.59052 -31.04731 -29.86561 -29.43689 -27.15201 -26.03953 -23.96894 -22.32705 -22.07347 -21.51077 -20.50560 -20.26095 -18.22747 -17.22479 -16.67760 -16.09517 -15.87302 -15.56359 -14.72075 -14.66929 -14.31614 -14.10705 -13.78906 -13.64163 -13.29225 -12.91973 -12.49545 -12.31157 -12.24992 -11.99550 -11.95350 -11.59741 -11.36679 -11.21181 -11.10959 -11.03171 -10.92822 -10.85568 -10.34464 -10.20456 -10.07259 -9.88245 -9.75437 -9.39649 -9.33880 -8.69812 -8.38260 -7.86993 -7.84110 -7.52942 -6.23495 -4.27337 2.44147 2.47752 3.21256 3.29606 3.31921 3.82505 3.89595 4.21735 4.33129 4.59287 4.89148 5.10563 5.14062 5.27211 5.32976 5.50045 5.55603 5.59955 5.71934 5.77446 5.82061 5.86193 5.88559 5.95477 6.10312 6.15866 6.25362 6.30498 6.36914 6.44203 6.51753 6.57347 6.68407 6.84554 6.95489 7.04586 7.26958 7.42943 7.43676 7.53602 7.67831 7.83591 7.96812 8.04580 8.13714 8.40886 8.76290 9.34685 9.43040 10.84044 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.007431 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.787394 B = 3767.224920 C = 5171.179962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.051 3.949 10 H 0.090 0.910 11 C 0.533 3.467 12 O -0.548 6.548 13 N -0.608 5.608 14 C 0.116 3.884 15 C 0.060 3.940 16 O -0.549 6.549 17 C 0.134 3.866 18 C -0.151 4.151 19 C -0.195 4.195 20 C -0.166 4.166 21 C -0.014 4.014 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.120 4.120 27 H 0.266 0.734 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.365 0.635 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -6.136 6.727 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.030 3.970 10 H 0.107 0.893 11 C 0.324 3.676 12 O -0.425 6.425 13 N -0.340 5.340 14 C -0.008 4.008 15 C -0.020 4.020 16 O -0.352 6.352 17 C 0.011 3.989 18 C -0.170 4.170 19 C -0.232 4.232 20 C -0.203 4.203 21 C -0.015 4.015 22 C -0.097 4.097 23 C -0.155 4.155 24 C -0.167 4.167 25 C -0.152 4.152 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.209 0.791 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.977 -5.997 6.174 8.663 hybrid contribution -0.133 0.542 0.347 0.657 sum -1.110 -5.455 6.521 8.574 Atomic orbital electron populations 1.69902 1.05741 1.27214 1.48175 1.24916 0.94908 0.99128 0.93963 0.86561 0.80035 0.83072 0.78383 1.20431 1.21021 1.19655 1.20633 0.93261 0.88523 1.52206 0.92162 1.18159 0.99523 0.91702 0.87642 0.89253 1.21497 0.80156 0.84762 0.81201 1.90579 1.43840 1.39212 1.68859 1.47699 1.47527 1.32626 1.06195 1.21329 0.95042 0.88024 0.96376 1.22668 0.98702 0.94184 0.86426 1.86797 1.67862 1.49476 1.31046 1.21382 0.86659 0.93531 0.97364 1.22815 0.96409 1.02684 0.95138 1.23054 1.04449 1.00653 0.94998 1.22827 0.98485 0.95412 1.03611 1.20127 0.91999 0.91961 0.97396 1.20864 0.98680 0.97360 0.92769 1.20969 0.96836 1.01946 0.95716 1.20782 0.93184 1.03963 0.98757 1.20876 0.97351 1.02302 0.94685 1.20978 0.97606 1.00377 0.94879 0.92430 0.89824 0.90472 0.94304 0.93438 0.79092 0.85647 0.92194 0.88090 0.89802 0.89362 0.88704 0.89215 0.86929 0.87669 0.87821 0.87695 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.30 12.80 55.43 0.71 -21.60 16 2 C 0.08 1.89 5.18 -17.82 -0.09 1.79 16 3 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.51 -12.77 6.13 -34.44 -0.21 -12.98 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.22 1.58 -94.08 -0.15 1.07 16 10 H 0.09 2.24 6.02 -51.93 -0.31 1.92 16 11 C 0.53 12.27 6.58 -10.99 -0.07 12.20 16 12 O -0.55 -13.99 14.20 2.14 0.03 -13.96 16 13 N -0.61 -11.62 2.45 -173.68 -0.43 -12.04 16 14 C 0.12 1.88 5.87 -4.03 -0.02 1.85 16 15 C 0.06 0.84 7.37 37.16 0.27 1.11 16 16 O -0.55 -9.16 12.70 -38.65 -0.49 -9.65 16 17 C 0.13 2.35 5.34 -4.04 -0.02 2.32 16 18 C -0.15 -2.39 4.78 -90.62 -0.43 -2.82 16 19 C -0.19 -2.45 9.79 -26.69 -0.26 -2.71 16 20 C -0.17 -2.38 10.26 -26.69 -0.27 -2.65 16 21 C -0.01 -0.33 4.43 -104.62 -0.46 -0.80 16 22 C -0.08 -1.84 8.11 -39.58 -0.32 -2.16 16 23 C -0.14 -2.81 10.05 -39.58 -0.40 -3.20 16 24 C -0.15 -2.87 10.05 -39.58 -0.40 -3.26 16 25 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.70 9.67 -39.58 -0.38 -3.08 16 27 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.08 1.53 7.38 -51.93 -0.38 1.14 16 29 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.63 6.81 -51.93 -0.35 0.27 16 32 H 0.36 4.26 9.12 45.56 0.42 4.68 16 33 H 0.13 2.62 5.25 -51.93 -0.27 2.35 16 34 H 0.06 0.90 7.65 -51.93 -0.40 0.51 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.11 2.70 7.84 -52.49 -0.41 2.28 16 41 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.11 2.37 7.96 -52.49 -0.42 1.95 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -30.09 363.26 -9.24 -39.33 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.89 Total: 13.93 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.62 Total: -16.38 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.28 Total: -33.64 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.46 Total: -23.60 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.09 -9.24 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412937017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.775 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds