Wall clock time and date at job start Tue Mar 31 2020 08:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48508 * 109.46998 * 274.45331 * 3 2 1 5 5 H 1.48495 * 109.47123 * 34.44946 * 3 2 1 6 6 H 1.48491 * 109.47246 * 154.45165 * 3 2 1 7 7 C 1.37877 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 5.86851 * 7 2 1 9 9 C 1.50699 * 119.99927 * 185.86608 * 7 2 1 10 10 H 1.09003 * 109.47200 * 27.05270 * 9 7 2 11 11 C 1.50703 * 109.47131 * 147.04862 * 9 7 2 12 12 O 1.21283 * 120.00077 * 109.63902 * 11 9 7 13 13 N 1.34774 * 120.00380 * 289.64626 * 11 9 7 14 14 C 1.46501 * 119.99764 * 5.36997 * 13 11 9 15 15 C 1.53008 * 109.47244 * 263.61976 * 14 13 11 16 16 O 1.42899 * 109.47252 * 64.99630 * 15 14 13 17 17 C 1.46494 * 120.00427 * 185.37249 * 13 11 9 18 18 C 1.52997 * 109.47187 * 269.99865 * 17 13 11 19 19 C 1.53006 * 117.49848 * 243.74683 * 18 17 13 20 20 C 1.52999 * 117.50057 * 175.08686 * 18 17 13 21 21 C 1.50693 * 109.47400 * 267.04845 * 9 7 2 22 22 C 1.38236 * 120.00289 * 305.37394 * 21 9 7 23 23 C 1.38239 * 120.00023 * 179.78611 * 22 21 9 24 24 C 1.38225 * 119.99919 * 0.43846 * 23 22 21 25 25 C 1.38239 * 120.00464 * 359.81665 * 24 23 22 26 26 C 1.38232 * 119.99502 * 359.97107 * 25 24 23 27 27 H 0.97004 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47262 * 143.61604 * 14 13 11 29 29 H 1.09004 * 109.47423 * 23.61289 * 14 13 11 30 30 H 1.09002 * 109.47087 * 185.00306 * 15 14 13 31 31 H 1.09008 * 109.46720 * 304.99915 * 15 14 13 32 32 H 0.96701 * 113.99920 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.47227 * 29.99436 * 17 13 11 34 34 H 1.09007 * 109.47456 * 149.99772 * 17 13 11 35 35 H 1.08999 * 115.54972 * 29.41412 * 18 17 13 36 36 H 1.08996 * 117.49822 * 359.97438 * 19 18 17 37 37 H 1.09001 * 117.49518 * 145.02066 * 19 18 17 38 38 H 1.09007 * 117.49734 * 214.97657 * 20 18 17 39 39 H 1.08997 * 117.49752 * 359.97438 * 20 18 17 40 40 H 1.07998 * 119.99719 * 359.97438 * 22 21 9 41 41 H 1.08004 * 119.99790 * 180.27188 * 23 22 21 42 42 H 1.08007 * 120.00084 * 179.83224 * 24 23 22 43 43 H 1.07997 * 120.00182 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.99790 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4026 2.1007 -1.3959 5 1 1.4969 2.6236 0.7920 6 1 3.5906 1.4147 0.6038 7 6 2.0045 -1.1941 -0.0005 8 1 1.4687 -2.1268 -0.0966 9 6 3.5055 -1.1976 0.1329 10 1 3.8240 -0.3085 0.6771 11 6 3.9402 -2.4293 0.8846 12 8 4.5267 -3.3184 0.3045 13 7 3.6770 -2.5430 2.2015 14 6 2.8671 -1.5261 2.8771 15 6 3.7873 -0.5069 3.5520 16 8 4.5274 0.2003 2.5550 17 6 4.2008 -3.6833 2.9575 18 6 3.1887 -4.8300 2.9173 19 6 2.5637 -5.2675 4.2436 20 6 3.6006 -6.1585 3.5548 21 6 4.1317 -1.1987 -1.2378 22 6 3.7863 -2.1738 -2.1548 23 6 4.3574 -2.1722 -3.4137 24 6 5.2806 -1.2009 -3.7525 25 6 5.6301 -0.2288 -2.8338 26 6 5.0557 -0.2279 -1.5764 27 1 -0.4850 0.8401 0.0004 28 1 2.2390 -2.0029 3.6296 29 1 2.2372 -1.0188 2.1463 30 1 3.1879 0.1982 4.1280 31 1 4.4776 -1.0254 4.2175 32 1 5.1331 0.8643 2.9118 33 1 5.1404 -4.0124 2.5140 34 1 4.3718 -3.3857 3.9921 35 1 2.5612 -4.8722 2.0271 36 1 2.8739 -4.7387 5.1448 37 1 1.5252 -5.5979 4.2257 38 1 3.2436 -7.0746 3.0842 39 1 4.5927 -6.2156 4.0025 40 1 3.0679 -2.9351 -1.8887 41 1 4.0842 -2.9314 -4.1316 42 1 5.7289 -1.2012 -4.7351 43 1 6.3517 0.5298 -3.0984 44 1 5.3284 0.5318 -0.8588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412937019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:47 Heat of formation + Delta-G solvation = -30.762090 kcal Electronic energy + Delta-G solvation = -26110.618981 eV Core-core repulsion = 22607.902936 eV Total energy + Delta-G solvation = -3502.716045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.57540 -38.13879 -36.91139 -36.57525 -34.17578 -33.50909 -31.39841 -30.02126 -29.09604 -28.05927 -26.13954 -23.45323 -22.37799 -22.11447 -21.72717 -21.10029 -20.15539 -18.14507 -17.36544 -16.98372 -16.24609 -16.01332 -15.75020 -14.98766 -14.56881 -14.44389 -14.14048 -14.09828 -13.69308 -13.17017 -12.93119 -12.72271 -12.59399 -12.43612 -12.23705 -11.86848 -11.77417 -11.69447 -11.41095 -11.38144 -11.07460 -10.94774 -10.66234 -10.35535 -10.27898 -10.09928 -9.76906 -9.69721 -9.56041 -9.35192 -8.81698 -8.48137 -8.02421 -7.97036 -7.68183 -6.23655 -4.24918 2.26360 2.32560 3.27704 3.36379 3.41425 3.67188 3.77540 4.03558 4.32854 4.61455 4.72900 4.93013 5.06625 5.09319 5.17628 5.43980 5.47904 5.58479 5.64582 5.67721 5.71485 5.72394 5.81731 5.89350 5.93801 5.97229 6.05041 6.12261 6.19896 6.27769 6.43298 6.49183 6.49971 6.73986 6.80038 6.87508 7.07863 7.27623 7.32796 7.39086 7.43961 7.74492 7.91193 7.96657 8.19073 8.35736 8.77217 9.23700 9.34516 10.85999 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.006722 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.611030 B = 4164.466347 C = 5146.806480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.084 3.916 3 Si 0.854 3.146 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.230 1.230 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.008 3.992 10 H 0.107 0.893 11 C 0.547 3.453 12 O -0.563 6.563 13 N -0.603 5.603 14 C 0.090 3.910 15 C 0.059 3.941 16 O -0.554 6.554 17 C 0.148 3.852 18 C -0.157 4.157 19 C -0.183 4.183 20 C -0.180 4.180 21 C -0.029 4.029 22 C -0.071 4.071 23 C -0.132 4.132 24 C -0.145 4.145 25 C -0.132 4.132 26 C -0.136 4.136 27 H 0.267 0.733 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.366 0.634 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.767 -1.810 7.700 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.120 4.120 3 Si 0.680 3.320 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.154 1.154 7 C -0.539 4.539 8 H 0.095 0.905 9 C -0.013 4.013 10 H 0.125 0.875 11 C 0.338 3.662 12 O -0.442 6.442 13 N -0.335 5.335 14 C -0.033 4.033 15 C -0.020 4.020 16 O -0.359 6.359 17 C 0.025 3.975 18 C -0.176 4.176 19 C -0.220 4.220 20 C -0.217 4.217 21 C -0.030 4.030 22 C -0.089 4.089 23 C -0.150 4.150 24 C -0.163 4.163 25 C -0.150 4.150 26 C -0.154 4.154 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.212 0.788 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.548 -2.553 7.000 10.607 hybrid contribution 0.421 1.231 0.433 1.371 sum 7.969 -1.322 7.433 10.978 Atomic orbital electron populations 1.69894 1.06282 1.27378 1.48599 1.24975 0.94666 0.98878 0.93508 0.87161 0.82357 0.83425 0.79060 1.20199 1.21611 1.15395 1.20504 0.86856 0.95100 1.51483 0.90469 1.18870 0.97477 0.95380 0.89565 0.87533 1.21130 0.75697 0.88625 0.80705 1.90571 1.43262 1.42813 1.67551 1.47632 1.53457 1.23390 1.09054 1.22105 0.92897 0.88614 0.99654 1.22700 0.94368 0.94365 0.90617 1.86716 1.59062 1.55390 1.34706 1.20843 0.95919 0.85273 0.95483 1.22839 1.02215 0.95471 0.97072 1.23026 0.98283 1.04356 0.96312 1.22889 0.99500 0.94700 1.04643 1.20210 0.92311 0.93045 0.97432 1.20897 0.97960 0.97798 0.92252 1.21030 0.98256 0.98904 0.96852 1.20838 0.99952 0.96678 0.98854 1.20882 1.00799 0.99007 0.94343 1.21028 0.98004 0.99796 0.96595 0.92312 0.90443 0.84576 0.93346 0.94646 0.78799 0.90268 0.91603 0.87386 0.89118 0.89106 0.89095 0.89077 0.86544 0.87299 0.87499 0.87431 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.96 55.43 0.77 -24.23 16 2 C 0.08 2.23 5.00 -17.82 -0.09 2.14 16 3 Si 0.85 19.92 27.04 -169.99 -4.60 15.33 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.23 -4.93 4.98 56.52 0.28 -4.65 16 7 C -0.50 -13.04 6.15 -34.44 -0.21 -13.25 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.01 0.19 1.07 -94.08 -0.10 0.09 16 10 H 0.11 2.42 2.11 -51.93 -0.11 2.31 16 11 C 0.55 12.34 6.74 -10.98 -0.07 12.27 16 12 O -0.56 -13.91 14.84 5.55 0.08 -13.83 16 13 N -0.60 -11.33 2.43 -173.68 -0.42 -11.75 16 14 C 0.09 1.56 5.62 -4.04 -0.02 1.54 16 15 C 0.06 0.82 7.38 37.16 0.27 1.10 16 16 O -0.55 -8.67 10.12 -35.23 -0.36 -9.02 16 17 C 0.15 2.35 5.67 -4.05 -0.02 2.32 16 18 C -0.16 -2.38 6.01 -90.62 -0.54 -2.92 16 19 C -0.18 -2.23 10.18 -26.69 -0.27 -2.50 16 20 C -0.18 -2.22 10.25 -26.69 -0.27 -2.49 16 21 C -0.03 -0.68 4.06 -104.63 -0.43 -1.10 16 22 C -0.07 -1.63 8.06 -39.58 -0.32 -1.95 16 23 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 24 C -0.15 -2.67 10.05 -39.59 -0.40 -3.06 16 25 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.14 -2.89 9.20 -39.58 -0.36 -3.25 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 29 H 0.14 2.88 4.52 -51.93 -0.23 2.65 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.43 8.04 -51.92 -0.42 0.01 16 32 H 0.37 3.91 9.12 45.56 0.42 4.32 16 33 H 0.08 1.35 7.50 -51.93 -0.39 0.96 16 34 H 0.07 0.86 7.71 -51.92 -0.40 0.46 16 35 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 36 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.12 2.79 7.90 -52.49 -0.41 2.38 16 41 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.19 7.95 -52.48 -0.42 1.77 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -31.53 355.37 -8.67 -40.20 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -5.87 Total: 14.94 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.64 Total: -16.99 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.35 Total: -35.98 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.27 Total: -22.85 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.60 Total: 15.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.53 -8.67 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412937019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.436 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds